| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2937687 | 1 (0.030) | 45 (1.390) | 26/286 | 0.3 | 97.9% | intergenic (+44/+39) | PP_2569/PP_2570 | MHS family metabolite MFS transporter/transposase |
| ? | NC_002947 | 5545321 = | NA (NA) | intergenic (‑461/+416) | rpsF/rlmB | 30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB | |||||
TACGGCTTGTGGTACCCGATCGTGATTGCCGTGATGACAGCGGTGCTGGGGATCTTCTTCCTGCCTGAGACCAAAGATCGGGATATCACTCACACCTGAAGGTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTCAAGACCTTGTTCAAC > NC_002947/2937545‑2937830 | tACGGCTTGTGGTACCCGATCGTGATTTCCGTTATGACAGCGGTGCTGGGGATCTTCTTCCTGCCTGAGACCAAAGATCTGGATATCACTCACACCTGAAGGTCTAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTtcta < 5:96266‑M1/147‑5 (MQ=255)tACGGCTTGTGGTACCCGATCGTGATTGCCGTGATGACAGCGGTGCTGGGGATCTTCTTCCTGCCTGAGACCAAAGATCGGGATATCACTCACACCTGAAGGTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTt < 2:37679‑M1/144‑2 (MQ=255) cGGCTTGTGGTACCCGATCGTGATTGCCGTGATGACAGCGGTGCTGGGGATCTTCTTCCTGCCTGAGACCAAAGATCGGGATATCACTCACACCTGAAGGTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTtctatc < 5:103525‑M1/147‑7 (MQ=255) gTACCCGATCGTGATTGCCGTGATGACAGCGGTGCTGGGGATCTTCTTCCTGCCTGAGACCAAAGATCGGGATATCACTCACACCTGAAGGTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTtctatcaaacaaaag > 5:148498‑M1/1‑132 (MQ=255) gTACCCGATCGTGATTGCCGTGATGACAGCGGTGCTGGGGATCTTCTTCCTGCCTGAGACAAAAGATCGGGATATCACTCACACCTGAAGGTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTtctatcaaacaaaag > 3:145575‑M1/1‑132 (MQ=255) tACCCGATCGTGATTGCCGTGATGACAGCGGTGCTGGGGATCTTCTTCCTGCCTGAGACCAAAGATCGGGATATCACTCACACCTGAAGGTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTtctatcaaacaaaaga > 3:155537‑M1/1‑131 (MQ=255) aCCCGATCGTGATTGCCGTGATGACAGCGGTGCTGGGGATCTTCTTCCTGCCTGAGACCAAAGATCGGGATATCACTCACACCTGAAGGTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTtctatcaaacaaaagata < 1:27440‑M1/148‑19 (MQ=255) gATCGTGATTGCCGTGATGACAGCGGTGCTGGCGATCTTCTTCCTGCCTGAGACCAAAGATCGGGATATCACTCACACCTGAAGGTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTtctatcaaacaaaagataaccc > 6:117812‑M1/1‑126 (MQ=255) aTCGTGATTGCCGTGATGACAGCGGTGCTGGGGATCTTCTTCCTGCCTGAGACCAAAGATCGGGATATCACTCACACCTGAAGGTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTtctatcaaacaaaagataaccca < 6:163808‑M1/148‑24 (MQ=255) ggTGCTGGGGATCTTCTTCCTGCCTGAGACCAAAGATCGGGATATCACTCACACCTGAAGGTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaac < 3:170395‑M1/148‑47 (MQ=255) ggggATCTTCTTCCTGCCTGAGACCAAAGATCGGGATATCACTCACACCTGAAGGTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgc > 7:82524‑M1/1‑96 (MQ=255) gATCTTCTTCCTGCCTGAGACCAAAGATCGGGATATCACTCACACCTGAAGGTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGtt < 1:148332/148‑1 (MQ=255) tgcctgAGACCAAAGATCGGGATATCACTCACACCTGAAGGTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggc > 1:192822‑M1/1‑82 (MQ=255) ctgAGACCAAAGATCGGGATATCACTCACACCTGAAGGTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGTTGAACCCGCTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcgg < 4:38450‑M1/147‑69 (MQ=255) tgAGACCAAAGATCGGGATATCACTCACACCTGAAGGTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggc > 2:64210‑M1/1‑78 (MQ=255) cAAAGATCGGGATATCACTCACACCTGAAGGTTGAGTTTGCCTGTGCCGGCCACTTCGCGGGTGAACCCGCTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaagtgt > 4:134288‑M1/1‑72 (MQ=255) aaaGATCGGGATATCACTCACACCTGAAGGTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaagtgtt < 1:478‑M1/148‑78 (MQ=255) ggATATCACTCACACCTGAAGGTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaagtgttcactcttc < 5:93798‑M1/148‑86 (MQ=255) gATATCACTCACACCTGAAGGTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaagtgttcactcttct > 1:4799‑M1/1‑62 (MQ=255) tcacACCTGAAGGTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaagtgttcactcttctatacgtgg > 1:189028‑M1/1‑54 (MQ=255) tGAAGGTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaagtgttcactcttctatacgtggtcacagc < 7:71033‑M1/148‑102 (MQ=255) gAAGGTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaagtgttcactcttctatacgtggtcacag > 4:9960‑M1/1‑46 (MQ=255) aGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaagtgttcactcttctatacgtggtcacagcaagctgtgc < 4:6048‑M1/148‑111 (MQ=255) aGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaagtgttcactcttctatacgtggtcacagcaagctgtgc < 1:149796‑M1/148‑111 (MQ=255) tgtgCCGGCCCCTTCGCGGGTGAACCCGCTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaagtgttcactcttctatacgtggtcacagcaagctgtgccgacaggg > 8:146788‑M1/1‑30 (MQ=255) gCCGGCCCCTTCGCGGGTGAACCCGCTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaagtgttcactcttctatacgtggtcacagcaagctgtgccgacagggat < 1:41475‑M1/147‑121 (MQ=255) gCCGGCCCCTTCGCGGGTGAACCCGCTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaagtgttcactcttctatacgtggtcacagcaagctgtgccgacagggat < 8:160872‑M1/147‑121 (MQ=255) gCCGGCCCCTTCGCGGGTGAACCCGCTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaagtgttcactcttctatacgtggtcacagcaagctgtgccgacaggga < 5:63534‑M1/146‑120 (MQ=255) cGGCCCCTTCGCGGGTGAACCCGCTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaagtgttcactcttctatacgtggtcacagcaagctgtgccgacagggattaa > 3:90657‑M1/1‑25 (MQ=255) ggCCCCTTCGCGGGTGACCCCGCTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaagtgtgcactcttctatacgtggtcacagcaagctgtgccgacagggattaac > 2:87778‑M1/1‑24 (MQ=255) ggCCCCTTCGCGGGTGAACCCGCTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaagtgttcactcttctatacgtggtcacagcaagctgtgccgacagggattaac > 2:90449‑M1/1‑24 (MQ=255) ttCGCGGGTGAACCCGCTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaagtgttcactcttctatacgtggtcacagcaagctgtgccgacagggattaacgccgat > 6:114859‑M1/1‑18 (MQ=255) ttCGCGGGTGAACCCGCTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaagtgttcactcttctatacgtggtcacagcaagctgagccgacagggattaacgccgat > 3:8023‑M1/1‑18 (MQ=255) cgcgGGTGAACCCGCTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaagtgttcactcttctatacgtggtcacagcaagctgtgccgacagggattaacgccgat < 4:34455‑M1/146‑131 (MQ=255) gcgGGTGAACCCGCTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaagtgttcactcttctatacgtggtcacagcaagctgtgccgacagggattaacgccgatgc < 5:100283‑M1/147‑133 (MQ=255) tGAACCCGCTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaagtgttcactcttctatacgtggtcacagcaagctgtgccgacagggattaacgccgatgccatttg < 4:23669‑M1/148‑139 (MQ=255) tGAACCCGCTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaagtgttcactcttctatacgtggtcacagcaagctgtgccgacagggattaacgccgatgccatttg < 2:148252‑M1/148‑139 (MQ=255) gAACCCGCTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaagtgttcactcttctatacgtggtcacagcaagctgtgccgacagggattaacgccgatgccatttgg > 5:155598‑M1/1‑9 (MQ=255) aaCCCGCTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaagtgttcactcttctatacgtggtcacagcaagctgtgccgacagggattaacgccgatgccatttggg > 6:139794‑M1/1‑8 (MQ=255) aCCCGCTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaagtgttcactcttctatacgtggtcacagcaagctgtgccgacagggattaacgccgatgccatttggg < 6:8951‑M1/147‑141 (MQ=255) cccGCTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaagtgttcactcttctatacgtggtcacagcaagctgtgccgacagggattaacgccgatgccatttgggc < 8:77606‑M1/147‑142 (MQ=255) ccGCTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaagtgttcactcttctatacgtggtcacagcaagctgtgccgacagggattaacgccgatgccatttgggcca > 5:8871‑M1/1‑5 (MQ=255) ccGCTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaagtgttcactcttctatacgtggtcacagcaagctgtgccgacagggattaacgccgatgccatttgggcca > 4:99606‑M1/1‑5 (MQ=255) ccGCTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaagtgttcactcttctatacgtggtcacagcaagctgtgccgacagggattaacgccgatgccatttgggcca < 1:49907‑M1/148‑144 (MQ=255) ccGCTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaagtgttcactcttctatacgtggtcacagcaagctgtgccgacagggattaacgccgatgccatttgggcca > 1:164406‑M1/1‑5 (MQ=255) ccGCTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaagtgttcactcttctatacgtggtcacagcaagctgtgccgacagggattaacgccgatgccatttgggcca > 1:154090‑M1/1‑5 (MQ=255) | TACGGCTTGTGGTACCCGATCGTGATTGCCGTGATGACAGCGGTGCTGGGGATCTTCTTCCTGCCTGAGACCAAAGATCGGGATATCACTCACACCTGAAGGTCGAGTTTGCCTGTGCCGGCCCCTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTCAAGACCTTGTTCAAC > NC_002947/2937545‑2937830 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |