New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2957080	20 (0.610)	8 (0.250)	8/280	2.6	26.1%	intergenic (+35/‑161)	PP_2588/PP_2589	class III aminotransferase/aldehyde dehydrogenase family protein
	?	NC_002947	2957165 =	26 (0.820)					intergenic (+120/‑76)	PP_2588/PP_2589	class III aminotransferase/aldehyde dehydrogenase family protein

TCATGGCCCCGGCCTTGATCGCCAACCACAGCGAGCTGGATGAGCTGGTGGAGAAGACCCGGATAGCCGTAGACCGCACGGCGCGGCTGGTCGGCAAGCTGTAAGCCGCTGACAAGGGCAACGCGCTTCCCTGTGGGAGCGGGCACGCCCGCGAACACCGGCGAAGCCGGTGCCATCCACCGTGTCGCCTGATTCGCGGGCATGCCCGCTCCCACAGAGGGAGTGCGGCGTGCTTGCGGACTGTGTGGTACCTGTTACTTGCGCAAGAAGGACCGCCACGACGGT  >  NC_002947/2956942‑2957226                                                                                                                                           |                                                                                                                                                   tCATGGCCCCGGCCTTGATCGCCAACCACAGCGAGCTGGATGAGCTGGTGGAGAAGACCCGGATAGCCGTAGACCGCACGGCGCGGCTGGTCGGCAAGCTGTAAGCCGCTGACAAGGGCAACGCGCTTCCCTGTGGGAGtgcggcgtg                                                                                                                                           >  1:61217‑M1/1‑139 (MQ=255)          cGGCCTTGATCGCCAACCACAGCGAGCTGGATGAGCTGGTGGAGAAGACCCGGATAGCCGTAGACCGCACGGCGCGGCTGGTCGGCAAGCTGTAAGCCGCTGACAAGGGCAACGCGCTTCCCTGTGGGAGCGGGCACGCCCGCGAaca                                                                                                                                  <  5:132115/148‑1 (MQ=255)              cTTGATCGCCAACCACAGCGAGCTGGATGAGCTGGTGGAGAAGACCCGGATAGCCGTAGACCGCACGGCGCGGCTGGTCGGCAAGCTGTAAGCCGCTGACAAGGGCAACGCGCTTCCCTGTGGGAGCGGGCACGCCCGCGAACAcccg                                                                                                                              >  2:174131/1‑146 (MQ=255)               ttGATCGCCAACCACAGCGAGCTGGATGAGCTGGTGGAGAAGACCCGGATAGCCGTAGACCGCACGGCGCGGCTGGTCGGCAAGCTGTAAGCCGCTGACAAGGGCAACGCGCTTCCCTGTGGGAGtgcggcgtgcttgcggactgtgt                                                                                                                             <  1:32698‑M1/148‑24 (MQ=255)                 gATCGCCAACCACAGCGAGCTGGATGAGCTGGTGGAGAAGACCCGGATAGCCGTAGACCGCACGGCGCGGCTGGTCGGCAAGCTGTAAGCCGCTGACAAGGGCAACGCGCTTCCCTGTGGGAGCGGGCACGCCCGCGCACACCGGc                                                                                                                             >  3:131948/1‑146 (MQ=255)                    cGCCAACCACAGCGAGCTGGATGAGCTGGTGGAGAAGACCCGGATAGCCGTAGACCGCACGGCGCGGCTGGTCGGCAAGCTGTAAGCCGCTGACAAGGGCAACGCGCTTCCCTGTGGGAGCGGGCACGCCCGCGAACACCGGCGAAGc                                                                                                                        >  7:18510/1‑148 (MQ=255)                          ccACAGCGAGCTGGATGAGCTGGTGGAGAAGACCCGGATAGCCGTAGACCGCACGGCGCGGCTGGTCGGCAAGCTGTAAGCCGCTGACAAGGGCAACGCGCTTCCCTGTGGGAGCGGGCACGCCCGCGAACACCGGCGAAGCCGGTg                                                                                                                   >  4:94940/1‑147 (MQ=255)                                       gATGAGCTGGTGGAGAAGACCCGGATAGCCGTAGACCGCACGGCGCGGCTGGTCGGCAAGCTGTAAGCCGCTGACAAGGGCAACGCGCTTCCCTGTGGGAGtgcggcgtgcttgcggactgtgtggtacctgttacttgcgcaagaa                                                                                                      >  8:123853‑M1/1‑101 (MQ=255)                                        aTGAGCTGGTGGAGAAGACCCGGATAGCCGTAGACCGCACGGCGCGGCTGGTCGGCAAGCTGTAAGCCGCTGACAAGGGCAACGCGCTTCCCTGTGGGAGtgcggcgtgcttgcggactgtgtggtacctgttacttgcgcaagaa                                                                                                      <  2:61217‑M1/146‑47 (MQ=255)                                         tGAGCTGGGGGAGAAGACCCGGATAGCCGTAGACCGCACGGCGCGGCTGGTCGGCAAGCTGTAAGCCGCTGACAAGGGCAACGCGCTTCCCTGTGGGAGCGGGCACGCCCGCGAACACCGGCGAAGCCGGTGCCATCCACCGTGTCGc                                                                                                   <  1:172925/148‑1 (MQ=255)                                                  ggAGAAGACCCGGATAGCCGTAGACCGCACGGCGCGGCTGGTCGGCAAGCTGTAAGCCGCTGACAAGGGCAACGCGCTTCCCTGTGGGAGCGGGCACGCCCGCGAACACCGGCGAAGCCGGTGCCATCCACCGTGTCGCCTGATTcgc                                                                                          <  8:28486/148‑1 (MQ=255)                                                     gaagaCCCGGATAGCCGTAGACCGCACGGCGCGGCTGGTCGGCAAGCTGTAAGCCGCTGACAAGGGCAACGCGCTTCCCTGTGGGAGTGGGCACGCCCGCGAACACCGGCGAAGCCGGTGCCATCCACCGTGTCGCCTGATTCGCgg                                                                                        >  4:44392/1‑147 (MQ=255)                                                        gaCCCGGATAGCCGTAGACCGCACGGCGCGGCTGGTCGGCAAGCTGTAAGCCGCTGACAAGGGCAACGCGCTTCCCTGTGGGAGCGGGCACGCCCGCGAACACCGGCGAAGCCGGTGCCATCCACCGTGTCGCCTGATTCGCGGGCAt                                                                                    <  6:17002/148‑1 (MQ=255)                                                           ccGGATAGCCGTAGACCGCACGGCGCGGCTGGTCGGCAAGCTGTAAGCCGCTGACAAGGGCAACGCGCTTCCCTGTGGGAGtgcggcgtgcttgcggactgtgtggtacctgttacttgcgcaagaaggaccgccacgacggtcgttt                                                                                 <  1:83273‑M1/148‑68 (MQ=255)                                                           ccGGATAGCCGTAGACCGCACGGCGCGGCTGGTCGGCAAGCTGTAAGCCGCTGACAAGGGCAACGCGCTTCCCTGTGGGAGCGGGCACGCCCGCGCACACCGGCGCAGCCGGTGCCATCCACCGTGTCGCCTGATTCGCCGGCATGcc                                                                                 >  7:116351/1‑148 (MQ=255)                                                                   ccGTAGACCGCACGGCGCGGCTGGTCGGCAAGCTGTAAGCCGCTGACAAGGGCAACGCGCTTCCCTGTGGGAGCGGGCACGCCCGCGAACACCGGCGAAGCCGGTGCCATCCACCGTGTCGCCTGATTCGCGGGCATGCCCGCTccc                                                                          <  3:166715/147‑1 (MQ=255)                                                                         aCCGCACGGCGCGGCTGGTCGGCAAGCTGTAAGCCGCTGACAAGGGCAACGCGCTTCCCTGTGGGAGCGGGCACGCCCGCGAACACCGGCGAAGCCGGTGCCATCCACCGTGTCGCCTGATTCGCGGGCATGCCCGCTCCCACAGAgg                                                                   <  7:28703/148‑1 (MQ=255)                                                                                             ggCAAGCTGTAAGCCGCTGACAAGGGCAACGCGCTTCCCTGTGGGAGCGGGCACGCCCGCGAACACCGGCGAAGCCGGTGCCATCCACCGTGTCGCCTGATTCGCGGGCATGCCCGCTCCCACAGAGGGAGTGCGGCGTGCTTGCGGa                                               >  4:50660/1‑148 (MQ=255)                                                                                                   cTGTAAGCCGCGGACACGGGCAACGCGCTTCCCTGTGGGAGCGGGCACGCCCGCGAACACCGGCGAAGCCGGTGCCATCCACCGTGGCGCCTGATTCGCGGGCATGCCCGCTCCCACAGAGGGAGTGCGGCGTGCTTGCGGACtgtgt                                         <  6:117825/148‑1 (MQ=255)                                                                                                         gCCGCTGACAAGGGCAACGCGCTTCCCTGTGGGAGCGGGCACGCCCGCGAACACCGGCGAAGCCGGTGCCATCCACCGTGTCGCCTGATTCGCGGGCATGCCCGCTCCCACAGAGGGAGTGCGGCGTGCTTGCGGACTGTGTGGTAcc                                   <  6:168090/148‑1 (MQ=255)                                                                                                                  aaGGGCAACGCGCTTCCCTGTGGGAGCGGGCACGCCCGCGAACACCGGCGAACCCGGTGCCATCCACCGTGTCGCCTGATTCGCGGGCATGCCCGCTCCCACAGAGGGAGTGCGGCGTGCTTGCGGACTGTGTGGTACCTGTTACTTg                          >  3:144217/1‑148 (MQ=255)                                                                                                                         aCGCGCTTCCCTGTGGGAGtgcggcgtgcttgcggactgtgtggtacctgttacttgcgcaagaaggaccgccacgacggtcgtttggagtacaaatgtacactctcgaattctggcaacaacgcgcctcggacctctaccttccggc                   <  7:123853‑M1/148‑130 (MQ=255)                                                                                                                             gcTTCCCTGTGGGAGtgcggcgtgcttgcggactgtgtggtacctgttacttgcgcaagaaggaccgccacgacggtcgtttggagtacaaatgtacactctcgaattctggcaacaacgcgcctcggccctctaccttccggcccat               >  7:160370‑M1/1‑15 (MQ=255)                                                                                                                             gcTTCCCTGTGGGAGTGGGCACGCCCGCGAACACCGGCGAAGCCGGTGCCATCCCCCGTGTCGCCTGCTTCGCGGGCATGCCCGCTCCCACAGCGGGAGTGCGGCGTGCTTGCGGACTGTGTGGTACCTGTTACTTGCGCAAGAAGGa               >  5:118713/1‑148 (MQ=255)                                                                                                                                tCCCTGTGGGAGtgcggcgtgcttgcggactgtgtggtacctgttacttgcgcaagaaggaccgccacgacggtcgtttggagtacaaatgtacactctcgaattctggcaacaacgcgcctcggacctctaccttccggcccatgca            >  2:167432‑M1/1‑12 (MQ=255)                                                                                                                                   cTGTGGGAGCGGGCACGCCCGCGAACACCGGCGAAGCCGGTGCCATCCACCGTGTCGCCTGATTCGCGGGCATGCCCGCTCCCACAGAGGGAGTGCGGCGTGCTTGCGGACTGTGTGGTACCTGTTACTTGCGCAAGAAGGACCGCCa         >  6:93647/1‑148 (MQ=255)                                                                                                                                       gggAGCGGGCACGCCCGCGAACACCTGCGAAGCCGGTGCCATCCACCGTGTCGCCTGATTCGCGGGCATGCCCGCTCCCACAGAGGGAGTGCGGCGTGCTTGCGGACTGTGTGGTACCTGTTACTTGCGCAAGAAGGACCGCCacga      <  1:174131/147‑1 (MQ=255)                                                                                                                                       gggAGCGGGCACGCCCGCGAACACCGGCGAAGCCGGTGCCATCCACCGTGTCGCCTGATTCGCGGGCATGCCCGCTCCCACAGAGGGAGTGCGGCGTGCTTGCGGACTGTGTGGTACCTGTTACTTGCGCAAGAAGGACCGCCacgac     >  1:24681/1‑148 (MQ=255)                                                                                                                                          aGtgcggcgtgcttgcggactgtgtggtacctgttacttgcgcaagaaggaccgccacgacggtcgtttggagtacaaatgtacactctcgaattctggcaacaacgcgcctcggacctctaccttccggcccatgcactgatcgacg  <  6:118713‑M1/148‑147 (MQ=255)                                                                                                                                           gtgcggcgtgcttgcggactgtgtggtacctgttacttgcgcaagaaggaccgccacgacggtcgtttggagtacaaatgtacactctcgaattctggcaacaacgcgcctcggac                                 >  3:40547‑M1/1‑1 (MQ=255)                                                                                                                                           |                                                                                                                                                   TCATGGCCCCGGCCTTGATCGCCAACCACAGCGAGCTGGATGAGCTGGTGGAGAAGACCCGGATAGCCGTAGACCGCACGGCGCGGCTGGTCGGCAAGCTGTAAGCCGCTGACAAGGGCAACGCGCTTCCCTGTGGGAGCGGGCACGCCCGCGAACACCGGCGAAGCCGGTGCCATCCACCGTGTCGCCTGATTCGCGGGCATGCCCGCTCCCACAGAGGGAGTGCGGCGTGCTTGCGGACTGTGTGGTACCTGTTACTTGCGCAAGAAGGACCGCCACGACGGT  >  NC_002947/2956942‑2957226

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.