New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4073915	NA (NA)	7 (0.220)	5/282	3.6	19.4%	intergenic (‑453/+171)	mdtA/PP_3586	multidrug transporter membrane fusion protein/transposase
	?	NC_002947	= 4302585	30 (0.920)					intergenic (+1075/‑225)	PP_3774/PP_5627	hypothetical protein/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GGATTAACTCCGATGCCATTTGGACCACTCTCTCATTCGGGAGCAAAGCAGCACACCAGTGCGGTCTACGGCCTCTTTCCCGCGCATTGGGAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCTGGAAGGGCTGGGTAATCTCTCATGTGGCATTGGGATTTGGGATAGGAAGCTTATTGGAGCCTCGGGGCGATAGCCTT  >  NC_002947/4302440‑4302730                                                                                                                                                  |                                                                                                                                                  ggATTAACTCCGATGCCATTTGGACCACTCTCTCATTCGGGAGCAAAGCAGCACACCAGTGCGGTCTACGGCCTCTTTCCCGCGCATTGGGAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTc                                                                                                                                                 <  7:53438/148‑1 (MQ=34)  gATTAACTCCGATGCCATTTGGACCACTCTCTCATTCGGGAGCAAAGCAGCACACCAGTGCGGTCTACGGCCTCTTTCCCGCGCATTGGGAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCtttt                                                                                                                                                  >  2:120933/1‑146 (MQ=34)           cGATGCCATTTGGACCACTCTCTCATTCGGGAGCAAAGCAGCACACCAGTGCGGTCTACGGCCTCTTTCCCGCGCATTGGGAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTGGATCTCGa                                                                                                                                       <  3:22142/148‑1 (MQ=17)            gATGCCATTTGGACCACTCTCTCATTCGGGAGCAAAGCAGCACACCAGTGCGGTCTACGGCCTCTTTCCCGCGCATTGGGAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGAt                                                                                                                                      <  1:164937/148‑1 (MQ=32)                 cATTTGGACCACTCTCTCATTCGGGAGCAAAGCAGCACACCAGTGCGGTCTACGGCCTCTTTCCCGCGCATTGGGAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAg                                                                                                                                 <  6:162860/148‑1 (MQ=32)                   tttGGACCACTCTCTCATTCGGGAGCAAAGCAGCACACCAGTGCGGTCTACGGCCTCTTTCCCGCGCATTGGGAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTg                                                                                                                               <  5:39092/148‑1 (MQ=32)                                                                               cccGCGCATTGGGAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCTGGAAGGGCTgg                                                                    <  8:41348/147‑1 (MQ=32)                                                                               cccGCGCATTGGGAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCTGGAAGGGCTgg                                                                    <  5:133706/147‑1 (MQ=32)                                                                                ccGCGCATTGGGAACCATAGCATAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATATGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCTGGAAGGGCTggg                                                                   >  8:132484/1‑147 (MQ=17)                                                                                ccGCGCATTGGGAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCTGGAAGGGCTggg                                                                   >  2:182253/1‑147 (MQ=32)                                                                                     cATTGGGAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCTGGAAGGGCTGGGTAAtct                                                             <  5:11327/148‑1 (MQ=34)                                                                                          ggAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCTGGAAGGGCTGGGTAATCTCTCAt                                                        >  1:140092/1‑148 (MQ=34)                                                                                               cATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCTGGAAGGGCTGGGTAATCTCTCATGTGGc                                                   >  2:164400/1‑148 (MQ=38)                                                                                                    cAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCTGGAATGGCTGGGTAATCTCTCATGTGGCAttgg                                              >  6:87210/1‑148 (MQ=255)                                                                                                    cAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCTGGAAGGGCTGGGTAATCTCTCATGTGGCAttg                                               >  5:23698/1‑147 (MQ=255)                                                                                                     aaaGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCTGGAAGGGCTGGGTAATCTCTCATGTGGCAttggg                                             >  1:1822/1‑148 (MQ=255)                                                                                                      aaGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCTGGAAGGGCTGGGTAATCTCTCATGTGGCAttggga                                            >  4:89390/1‑148 (MQ=255)                                                                                                           ttCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCTGGAAGGGCTGGGTAATCTCTCATGTGGCAttgggatttg                                        <  8:58104/147‑1 (MQ=255)                                                                                                            tCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCTGGAAGGGCTGGGTAATCTCTCATGTGGCAttgggatttgg                                       <  6:23698/147‑1 (MQ=255)                                                                                                              ggcggcTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCTGGAAGGGCTGGGTAATCTCTCATGTGGCAttgggatttggga                                     <  5:134048/147‑1 (MQ=255)                                                                                                                  gcTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCTGGAAGGGCTGGGTAATCTCTCATGTGGCATTGGGATTTGGGATAg                                  >  8:160437/1‑146 (MQ=255)                                                                                                                       ccTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGTCAGCGCAGCCTGGAAGGGCTGGGTAATCTCTCATGTGGCATTGGGATTTGGGATAGGAAGc                             <  2:89540/146‑1 (MQ=255)                                                                                                                           cccGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCTGGAAGGGCTGGGTAATCTCTCATGTGGCATTGGGATTTGGGATAGGAAGCTTAtt                        >  3:4472/1‑147 (MQ=255)                                                                                                                             cGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCTGGAAGGGCTGGGTAATCTCTCATGTGGCATTGGGATTTGGGATAGGAAGCTTATTGGa                     <  1:120933/148‑1 (MQ=255)                                                                                                                             cGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCTGGAAGGGCTGGGTAATCTCTCATGTGGCATTGGGATTTGGGATAGGAAGCTTATTGGa                     <  8:6612/148‑1 (MQ=255)                                                                                                                               gATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCTGGAAGGGCTGGGTAATCTCTCATGTGGCATTGGGATTTGGGATAGGAAGCTTATTGGAGc                   <  6:45512/148‑1 (MQ=255)                                                                                                                                      cGGCGAATGCTTTTCTAGATCTCGAGGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCTGGAAGGGCTGGGTAATCTCTCATGTGGCATTGGGATTTGGGATAGGAAGCTTATTGGAGCCTCgggg            <  7:117448/148‑1 (MQ=255)                                                                                                                                           aaTGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCTGGAAGGGCTGGGTAATCTCTCATGTGGCATTGGGATTTGCGATAGGAAGCTTATTGGAGCCTCGGGGCGATa       <  7:110046/148‑1 (MQ=255)                                                                                                                                                ttttCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCTGGAAGGGCTGGGTAATCTCTCATGTGGCATTGGGATTTGGGATAGGAAGCTTATTGGAGCCTCGGGGCGATAGCCtt  >  3:86282/1‑148 (MQ=255)                                                                                                                                                ttttCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCTGGAAGGGCTGGGTAATCTCTCATGTGGCATTGGGATTTGGGATAGGAAGCTTATTGGAGCCTCGGGGCGATAGCCtt  >  7:79857/1‑148 (MQ=255)                                                                                                                                                  |                                                                                                                                                  GGATTAACTCCGATGCCATTTGGACCACTCTCTCATTCGGGAGCAAAGCAGCACACCAGTGCGGTCTACGGCCTCTTTCCCGCGCATTGGGAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCTGGAAGGGCTGGGTAATCTCTCATGTGGCATTGGGATTTGGGATAGGAAGCTTATTGGAGCCTCGGGGCGATAGCCTT  >  NC_002947/4302440‑4302730

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.