New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6152840	53 (1.620)	4 (0.130)	4/274	3.9	7.7%	coding (421/489 nt)	PP_5738	hypothetical protein
	?	NC_002947	= 6152866	46 (1.490)					coding (447/489 nt)	PP_5738	hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTTCAGGGTGACGCCATTTGCAAAAGCGCAGTTGCATGACCTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGCGTAAGTCAGGCCGATACCCACTGATGCGGCAGCAGTTGCCCGATCTCACTGGCCCGCTGTGTCGGCAACCGCGT  >  NC_002947/6152722‑6153007                                                                                                                                                 |                                                                                                                                              tttCAGGGTGACGCCATTTGCAAAAGCGCAGTTGCATGACCTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGAc                                                                                                                                            >  5:110313/1‑148 (MQ=255)  ttCAGGGTGACGCCATTTGCAAAAGCGCAGTTGCATGACCTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGAcc                                                                                                                                           <  1:36534/148‑1 (MQ=255)    cAGGGTGACGCCATTTGCAAAAGCGCAGTTGCATGACCTCGCGCCAGACGTAATTGTGTGCCTCGATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCg                                                                                                                                          >  5:119668/1‑147 (MQ=255)     aGGGTGACGCCATTTGCAAAAGCGCAGTTGCAGGACCTGGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCgg                                                                                                                                         <  7:53655/147‑1 (MQ=255)      gggTGACGCCATTTGCAAAAGCGCAGTTGCATGACCTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGc                                                                                                                                        <  2:83235/147‑1 (MQ=255)       ggTGACGCCATTTGCAAAAGCGCAGTTGCATGACCTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCAt                                                                                                                                      >  4:165586/1‑148 (MQ=255)             gCCATTTGCAAAAGCGCAGTTGCATGACCTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCAcc                                                                                                                                <  2:176291/148‑1 (MQ=255)               cATTTGCAAAAGCGCAGTTGCATGACCTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCAccc                                                                                                                               >  1:29092/1‑147 (MQ=255)                 tttGCAAAAGCGCAGTTGCATGACCTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCtt                                                                                                                             >  8:66750/1‑147 (MQ=255)                 tttGCAAAAGCGCAGTTGCATGACATCGCGCCAGACGTAATTGTGTGACTCTATTCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCtt                                                                                                                             >  5:18776/1‑147 (MQ=255)                    gCAAAAGCGCAGTTGCATGACCTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAAt                                                                                                                         >  6:120861/1‑148 (MQ=255)                     cAAAAGCGCCGTTGCATGACCTCGCTCCAGACGTAATTGTGTGCCTCTATGCGGATGGCCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAAt                                                                                                                         <  5:40164/147‑1 (MQ=255)                           cgcAGTTGCATGACCTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAAt                                                                                                                  <  8:66179/148‑1 (MQ=255)                             cAGTTGCATGACCTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCGATGCGAAATgg                                                                                                                <  8:51449/148‑1 (MQ=255)                              aGTTTCATGACCTCGCGCCAGAAGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCAGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGACGAAGGCAATTGAGCTGGACCGGCATGTCAACATTCAATGCGAAAttga                                                                                                               >  2:157553/1‑145 (MQ=255)                               gTTGCATGACCTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGcc                                                                                                              <  7:147163/148‑1 (MQ=255)                                   cATGACCTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGc                                                                                                          >  4:43132/1‑148 (MQ=255)                                   cATGACATCTCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCg                                                                                                           <  1:157553/147‑1 (MQ=255)                                    aTGACCTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGc                                                                                                          <  8:17926/147‑1 (MQ=255)                                      gACCTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCt                                                                                                         >  6:155163/1‑146 (MQ=255)                                        ccTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTgta                                                                                                      <  7:107239/147‑1 (MQ=255)                                             cgcCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGc                                                                                                <  1:28620/148‑1 (MQ=255)                                               ccAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGt                                                                                              >  8:11529/1‑148 (MQ=255)                                                 aGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTcc                                                                                            >  2:73799/1‑148 (MQ=255)                                                       aaTTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCaa                                                                                      <  8:24625/148‑1 (MQ=255)                                                             gtgCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCAcc                                                                                <  7:156160/148‑1 (MQ=255)                                                             gtgCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCACTGTAGTAAGCGTCCGCCCAACGCAc                                                                                 <  2:193460/147‑1 (MQ=255)                                                               gCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCtt                                                                              <  3:35072/148‑1 (MQ=255)                                                               gCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCtt                                                                              <  2:19650/148‑1 (MQ=255)                                                                            tGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGCGTAAGTCAGGc                                                                 <  6:110313/148‑1 (MQ=255)                                                                                 aGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGCGTAAGTCAGGCCGATa                                                            >  5:85693/1‑148 (MQ=255)                                                                                     acTTTCCGATCGAATCAAGGAAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGCGTAAGTCAGGCCGATACCCa                                                        <  8:41036/148‑1 (MQ=255)                                                                                            gATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGCGTAAGTCAGGCCGATACCCACTGATg                                                  <  7:66750/147‑1 (MQ=255)                                                                                            gATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGCGTAAGTCAGGCCGATACCCACTGATGc                                                 >  6:103037/1‑148 (MQ=255)                                                                                            gATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGCGTAAGTCAGGCCGATACCCACTGATGc                                                 >  6:100900/1‑148 (MQ=255)                                                                                            gATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGCGTAAGTCAGGCCGATACCCACTGATGc                                                 >  2:35666/1‑148 (MQ=255)                                                                                            gATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCGTGCGTCAGTCAGGCCGATACCCCCTGATGc                                                 >  7:123341/1‑148 (MQ=255)                                                                                             aTCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAACTGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGCGTAAGTCAGGCCGATACCCACTGATGCg                                                <  6:119886/148‑1 (MQ=255)                                                                                                     aaGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGCGTAAGTCAGGCCGATACCCACTGATGCGGCAGCAGt                                        >  4:178067/1‑148 (MQ=255)                                                                                                        gCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGCGTAAGTCAGGCCGATACCCACTGATGCGGCAGCAGTTGc                                     >  6:114765/1‑148 (MQ=255)                                                                                                        gCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGCGTAAGTCAGGCCGATACCCACTGATGCGGCAGCAGTTGc                                     <  7:11529/148‑1 (MQ=255)                                                                                                             tCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTCGTAAGCGTCCGCCCAACGCACCTTGCGTAAGTCAGGCCGATACCCACTGATGCGGCAGCAGTTGCCCGAt                                <  6:119668/148‑1 (MQ=255)                                                                                                                tGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGCGTAAGTCAGGCCGATACCCACTGATGCGGCAGCAGTTGCCCGAtctc                             >  5:76156/1‑148 (MQ=255)                                                                                                                   cGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGCGTAAGTCAGGCCGATACCCACTGATGCGGCAGCAGTTGCCCGATCTCACt                          <  6:116836/148‑1 (MQ=255)                                                                                                                    ggTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGCGTAAGTCAGGCCGATACCCACTGATGCGGCAGCAGTTGCCCGATCTCACTg                         >  2:93984/1‑148 (MQ=255)                                                                                                                    ggTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGCGTAAGTCAGGCCGATACCCACTGATGCGGCAGCAGTTGCCCGATCTCACTg                         <  3:15011/148‑1 (MQ=255)                                                                                                                        gCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGCGTAAGTCAGGCCGATACCCACTGATGCGGCAGCAGTTGCCCGATCTCACTGGccc                     >  6:80940/1‑148 (MQ=255)                                                                                                                                ccGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGCGTAAGTCAGGCCGATACCCACTGATGCGGCAGCAGTTGCCCGATCTCACTGGCCCGCTGTGTc             >  5:51628/1‑148 (MQ=255)                                                                                                                                 cGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGCGTAAGTCAGGCCGATACCCACTGATGCGGCAGCAGTTGCCCGATCTCACTGGCCCGCTGTGTCg            <  1:110801/148‑1 (MQ=255)                                                                                                                                 cGAAGCCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATTGCCTCGCTGTAGTAAGCTTCCGCCCAACGCACCTTGCGTAAGTCAGGCCGATACCCACTGATGCGGCAGCAGTTGCCCGATCTCACTGGCCCGCTGTGTc             <  6:69/147‑1 (MQ=255)                                                                                                                                           tGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGCGTAAGTCAGGCCGATACCCACTGATGCGGCAGCAGTTGCCCGATCTCACTGGCCCGCTGTGTCGGCAACCGCGt  <  2:77440/148‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                              TTTCAGGGTGACGCCATTTGCAAAAGCGCAGTTGCATGACCTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGCGTAAGTCAGGCCGATACCCACTGATGCGGCAGCAGTTGCCCGATCTCACTGGCCCGCTGTGTCGGCAACCGCGT  >  NC_002947/6152722‑6153007

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.