Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_002947 | 4,740,819 | 2 bp→CT | intergenic (+56/+696) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,740,819 | 0 | T | C | 96.3% | 73.3 / ‑4.2 | 27 | intergenic (+56/+697) | gltA/yeiW | citrate synthase/putative oxidoreductase |
Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (15/11); total (15/12) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.44e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.18e-01 | |||||||||||
* | NC_002947 | 4,740,820 | 0 | G | T | 96.3% | 79.6 / ‑3.1 | 27 | intergenic (+57/+696) | gltA/yeiW | citrate synthase/putative oxidoreductase |
Reads supporting (aligned to +/- strand): ref base G (0/0); major base T (15/11); minor base . (0/1); total (15/12) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.44e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.72e-01 |
CCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCCTTTTTTTATTTTTCTGGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTATTGAACGGCGCATCCACCACGAACTTGTTGGCCACC > NC_002947/4740683‑4740953 || ccGTACAAGATCGGCCGTCCGCGCCAGCTGTACTCCGGCGAGCAGACGCGCGACAGCGGTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGTCAGCC‑TTTTTTATTTGTCCTGTGCCGGCctc < 1:60494/148‑1 (MQ=255) tACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTc < 8:71805/148‑1 (MQ=255) aaGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTcgc < 8:24424/147‑1 (MQ=255) gATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGc < 7:151929/148‑1 (MQ=255) aTCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGcc < 7:77691/148‑1 (MQ=255) tCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGACGGCTGCCCTCGGGCCGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCt > 5:135906/1‑148 (MQ=255) gcCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCT‑GTGCCGGCCTCTTCGCGGGCAAGGCCGCGAagag < 4:11723/148‑1 (MQ=38) ccAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAagag < 1:161800/148‑1 (MQ=255) aGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGc > 7:9288/1‑148 (MQ=255) cacCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCGTGCCCGCGAAGAGGCCGGcaca > 7:33662/1‑148 (MQ=255) acCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTAGTCCTGTGCCGGCCTCATCGCCGCCATGCCCCCCCAGAGGCCGGCACAg > 3:86075/1‑148 (MQ=255) gACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGCAGAGGCCGGCACAGACACCACAAAACCTCAGt > 3:73534/1‑148 (MQ=255) ttGCCCTTAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCTAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTtct < 2:25919/147‑1 (MQ=255) ggCCCTGAAGGCCCGCCAGTACGCTGCAGGCGCCGAACGCAAGACGGCTGCCCTCGGGCTG‑CGTTTTTTATTTGTCCTGGGCCGGCCTCTTGGCGGCGTTGCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTcc < 1:11930/147‑1 (MQ=255) cTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TGTTTTATTTGTCCTGTGCCGGCCTCTTAGCGGCCTTTCCCGCGCAGAGGCCGGCACAGACACAACAAAACCGAAGTTTTTCTccgccc > 8:82444/1‑148 (MQ=255) tGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCCCAGACACCACAAAACCGCAGTTTTTCTccgcccg > 3:139136/1‑148 (MQ=255) cGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGACGCCGGCCCAGCCACCCCAAAACCGCAGTTTTTCTCCGCCCGCTCACGCa > 8:100356/1‑148 (MQ=255) ggCAGTAGCCGAACGCAAGACGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGCCCTTGCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAgg < 1:20645/147‑1 (MQ=255) gTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTAGCGGCCTTTCCCGCGAAGAGGCCGGCACAGACACCACAAAACCGCAGTTTTTGTCCGCCCGCGCACGCAGCCCTTTCAGGGTAt > 2:139137/1‑148 (MQ=255) cGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGCAGAGGCCGGCCCAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTATTGAAc > 3:83060/1‑148 (MQ=255) taaaaaagGCTGCCCGAGGGCAGCC‑TTCTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGGAGAGGCCGGCCCAGCCACCACAAAACCTCAGTTTTTATCCCCCCGCTGACCCACCCCTTTGAGGGGATTGAACGgcgc > 6:50021/6‑148 (MQ=255) aagaagGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTAGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACCACAAAACCACAGTTTTTATACCCCCGCTCACGCACCCCTTTCAGGGTATTGAAAGGCGCAt > 8:37092/1‑148 (MQ=255) cccTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTAGCGGCCTTGCCCGCGAAGAGGCCGGCACAGCAACCACAAAACCTCAGTTTTTCTACGCCCCCTCACGCAGCCCTTTAAGGGTATTTAACGGCGCATCCACCACGa > 4:114283/1‑147 (MQ=255) gggCAGCC‑TTTTTTATTTGTCCTGGGCCGGCCGCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTATTGAACGGCGCATCCACCACGAACttgt < 7:72027/148‑1 (MQ=255) cAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTATTGAACGGCGCATCCACCACGAACTTGTTgg < 4:132054/148‑1 (MQ=255) ttttttATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGGCGGCCCAGCCACCACAAAACCTCAGTTTTTCTGCGCCCGCTCACGCAGCCCTTTCAGGGTATTGCACGGCGCATCCACCACGAACTTGTTGGccacc > 5:171602/1‑148 (MQ=255) ttttttATTTGTCCTGTGCCGGCCTCTTCGCGGCCGTGCCCGCGCAGCGGCCGGCCCAGCCCCCCCCAAACCACAGTTTTTATCCGCCCGCTCACGCAGCCCGTTCAGGGTATTGGACGGCGCCTCCACCCCGCACTTGTTGGcccc > 2:148081/1‑145 (MQ=255) || CCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCCTTTTTTTATTTTTCTGGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTATTGAACGGCGCATCCACCACGAACTTGTTGGCCACC > NC_002947/4740683‑4740953 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |