Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_002947 | 1,499,480 | 2 bp→AC | intergenic (+57/‑106) | trpS → / → zapE | tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,499,480 | 0 | C | A | 93.3% | 35.7 / NA | 15 | intergenic (+57/‑107) | trpS/zapE | tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein |
Reads supporting (aligned to +/- strand): ref base C (1/0); new base A (2/12); total (3/12) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 2.00e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
* | NC_002947 | 1,499,481 | 0 | A | C | 100.0% | 37.2 / NA | 15 | intergenic (+58/‑106) | trpS/zapE | tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein |
Reads supporting (aligned to +/- strand): ref base A (0/0); new base C (3/12); total (3/12) |
GCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCCACGGCTTTGCCGGTGT‑T‑TCGGGCACG‑CCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATC > NC_002947/1499345‑1499617 || gCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCg < 1:119552/148‑1 (MQ=255) gCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCg < 5:93951/148‑1 (MQ=255) ggCCATTCAGTGCGTGAACGAATCGTTGGAACCACAGCAGGACTGAGGCTGCCAACCGGTGTTAGCGGGCGTTCCCGCGAAAAAGGCGCCGCGGTGCATGGCACGGGCTTTGCGGGTGT‑TCGGGGGCACGCCCGCTCCCACAGACTGa < 6:176355/148‑1 (MQ=255) agagCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGCAACAGGCGCCGCGGTGGATGGCCCCCGCGTTGGCCGTGT‑TAGCGGGCCCGCCCGCGCCCCCAGACGGCTTGccct > 3:111276/1‑145 (MQ=21) gCACAACAGCAGGACTGCGGCTGCCAAAGGGTGGTAGCGGGCGGGCCCGCTAAACAGGCGCCGCGGTGCATGGCACGGGCTTTGCCGGTGT‑TCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACa < 2:125656/147‑1 (MQ=21) cTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTGC‑GCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGtttt < 6:91148/148‑1 (MQ=21) gggtGCCAAACGGGGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGGGGTGCATGGCACCGGCTTTGCCGGTGT‑TCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAATCGGGCCTATCGCTACAGTGACGGCCCGtttttt < 4:36906/143‑1 (MQ=21) ggCTGCCTAACGGTGGGTGGGGGCGTGCCCGCGAAACAGGCGCCGCGGTGAATGGCACCGGCTTTGCGGGTGT‑TCGCGGGCAGGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGTCGGCCCGtttttt < 4:34456/146‑1 (MQ=255) gAGCGGGCGTGCCCGCTAAACAGGCGCCGCGTTGAATGGCACGGGCTTTGCCGGTGT‑TCGCGGGCAGGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAAt < 2:101386/148‑1 (MQ=25) ggCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGa < 1:102017/148‑1 (MQ=37) tGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCGGGTGT‑TCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGTCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTcc < 4:111276/148‑1 (MQ=25) ccGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGGTTTTTGTTGCCTCGCTAACGAATCATGACTccc > 5:112332/1‑146 (MQ=25) aGGCGCCGCGGTGCATGGCACCGGCTTTGCGGGTGT‑TCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTa < 6:27750/148‑1 (MQ=37) tGCATGGCACCGGCTTTGCCGGTGT‑TCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATc < 4:54331/148‑1 (MQ=38) gCATGGCACCGGCTTTGCCGGTGT‑TCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGCGTGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCGAACGAATCATGACTCCCTTAGAACGATATCAAGCAGATc > 6:23183/1‑147 (MQ=37) || GCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCCACGGCTTTGCCGGTGT‑T‑TCGGGCACG‑CCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATC > NC_002947/1499345‑1499617 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |