Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_002947	5,333,908	Δ1 bp	coding (338/2976 nt)	PP_4695 →	two‑component system sensor histidine kinase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	5,333,908	0	G	.	100.0%	298.7 / NA	65	coding (338/2976 nt)	PP_4695	two‑component system sensor histidine kinase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base . (33/32);  total (33/32)

CTACGGCTTCCTTGCCTGTTACCTGGGGGTGTCTGGCGCATTCCTGCTGGCGCCGGTGCTGCTCTACCCGATCCTCAAGATCACCCGCACCTATCAGCTGTCATCG‑CTGGCCGACCTGCTGGCCTTCCGCTTCCGCAGTACCTGGGCCGGGGCCTTGACCACCATCATCATGCTGATTGGCGTGCTGCCATTGCTGGCCTTGCAGATCCAGGCGGTGGCCGATTCGATCAGTATCCTTACCGGTGAACCGGTCAAAGCCCGGGTGGCCTTTGCCTTTT  >  NC_002947/5333774‑5334051                                                                                                                                        |                                                                                                                                                ctacggctTCCTTGCCTGTTACCTGGGGGTGTCTGGCGCATTCCTGCTGGCGCCGGTGCTGCTCTACCCGATCCTCAAGATCACCCGCACCTATCAGCTGTCATCG‑CTGGCCGACCTGCTGGCCTTCCGCTTCC‑CAGTACCTGGGCCgg                                                                                                                                  >  1:361160/1‑149 (MQ=255)  tacggctTCCTTGCCTGTTACCTGGGGGTGTCTGGCGCATTCCTGCTGGCGCCGGTGCTGCTCTACCCGATCCTCAAGATCACCCGCACCTATCAGCTGTCATCG‑CTGGCCGACCTGCTGGCCTTCCGCTTCC‑CAGTACCTGGGCCggg                                                                                                                                 >  8:127055/1‑149 (MQ=255)    cggctTCCTTGCCTGTTACCTGGGGGTGTCTGGCGCATTCCTGCTGGCGCCGGTGCTGCTCTACCCGATCCTCAAGATCACCCGCACCTATCAGCTGTCATCG‑CTGGCCGACCTGCTGGCCTTCCGCTTCC‑CAGTACCTGGGCCggg                                                                                                                                 <  5:196886/147‑1 (MQ=255)      gctTCCTTGCCTGTTACCTGGGGGTGTCTGGCGCATTCCTGCTGGCGCCGGTGCTGCTCTACCCGATCCTCAAGATCACCCGCACCTATCAGCTGTCATCG‑CTGGCCGACCTGCTGGCCTTCCGCTTCC‑CAGTACCTGGGCCGGGGCCt                                                                                                                             >  5:7637/1‑149 (MQ=255)       ctTCCTTGCCTGTTACCTGGGGGTGTCTGGCGCATTCCTGCTGGCGCCGGTGCTGCTCTACCCGATCCTCAAGATCACCCGCACCTATCAGCTGTCATCG‑CTGGCCGACCTGCTGGCCTTCCGCTTCC‑CAGTACCTGGGCCGGGGCCtt                                                                                                                            >  5:25905/1‑149 (MQ=255)        ttCCTTGCCTGTTACCTGGGGGTGTCTGGCGCATTCCTGCTGGCGCCGGTGCTGCTCTACCCGATCCTCAAGATCACCCGCACCTATCAGCTGTCATCG‑CTGGCCGACCTGCTGGCCTTCCGCTTCC‑CAGTACCTGGGCCGGGGCCtt                                                                                                                            >  4:380192/1‑148 (MQ=255)                     aCCTGGGGGTGTCTGGCGCATTCCTGCTGGCGCCGGTGCTGCTCTACCCGATCCTCAAGATCACCCGCACCTATCAGCTGTCATCGCCTGGCCGACCTGCTGGCCTTCCGCTTCC‑CAGTACCTGGGCCggg                                                                                                                                 <  1:285220/131‑1 (MQ=255)                     aCCTGGGGGTGTCTGGCGCATTCCTGCTGGCGCCGGTGCTGCTCTACCCGATCCTCAAGATCACCCGCACCTATCAGCTGTCATCG‑CTGGCCGACCTGCTGGCCTTCCGCTTCC‑CAGTACCTGGGCCggg                                                                                                                                 >  2:285220/1‑130 (MQ=255)                       cTGGGGGTGTCTGGCGCATTCCTGCTGGCGCCGGTGCTGCTCTACCCGATCCTCAAGATCACCCGCACCTATCAGCTGTCATCG‑CTGGCCGACCTGCTGGCCTTCCGCTTCC‑CAGTACCTGGGCCGGGGCCTTGACCACCATCATCATg                                                                                                            <  6:7637/149‑1 (MQ=255)                          ggggTGTCTGGCGCATTCCTGCTGGCGCCGGTGCTGCTCTACCCGATCCTCAAGATCACCCGCACCTATCAGCTGTCATCG‑CTGGCCGACCTGCTGGCCTTCCGCTTCC‑CAGTACCTGGGCCGGGGCCTTGACCACCATCATCATGCt                                                                                                          >  4:95242/1‑148 (MQ=255)                              tgtCTGGCGCATTCCTGCTGGCGCCGGTGCTGCTCTACCCGATCCTCAAGATCACCCGCACCTATCAGCTGTCATCG‑CTGGCCGACCTGCTGGCCTTCCGCTTCC‑CAGTACCTGGGCCGGGGCCTTGACCACCATCATCATGCTGATTg                                                                                                     <  6:25905/149‑1 (MQ=255)                                  tGGCGCATTCCTGCTGGCGCCGGTGCTGCTCTACCCGATCCTCAAGATCACCCGCACCTATCAGCTGTCATCG‑CTGGCCGACCTGCTGGCCTTCCGCTTCC‑CAGTACCTGGGCCGGGGCCTTGACCACCATCATCATGCTGATTGGCGt                                                                                                 >  6:399492/1‑149 (MQ=255)                                    gcgcATTCCTGCTGGCGCCGGTGCTGCTCTACCCGATCCTCAAGATCACCCGCACCTATCAGCTGTCATCG‑CTGGCCGACCTGCTGGCCTTCCGCTTCC‑CAGTACCTGGGCCGGGGCCTTGACCACCATCATCATGCTGATTGGCGtgc                                                                                               >  5:385749/1‑149 (MQ=255)                                      gcATTCCTGCTGGCGCCGGTGCTGCTCTACCCGATCCTCAAGATCACCCGCACCTATCAGCTGTCATCG‑CTGGCCGACCTGCTGGCCTTCCGCTTCC‑CAGTACCTGGGCCGGGGCCTTGACCACcatcatc                                                                                                               >  1:67018/1‑131 (MQ=255)                                      gcATTCCTGCTGGCGCCGGTGCTGCTCTACCCGATCCTCAAGATCACCCGCACCTATCAGCTGTCATCG‑CTGGCCGACCTGCTGGCCTTCCGCTTCC‑CAGTACCTGGGCCGGGGCCTTGACCACcatcatc                                                                                                               <  2:67018/131‑1 (MQ=255)                                      gcATTCCTGCTGGCGCCGGTCCTGCTCTACCCGATCCTCAAGATCACCCGCACCTATCAGCTGACATCG‑CTGGCCGACCTGCTGGCCTACCGCTTCC‑CAGTACCTGGGCCGGGGCCTTCACAAAAATCATCATGCAGATTGGCGtgctg                                                                                             >  8:163192/1‑149 (MQ=255)                                         ttCCTGCTGGCGCCGGTGCTGCTCTACCCGATCCTCAAGATCACCCGCACCTATCAGCTGTCATCG‑CTGGCCGACCTGCTGGCCTTCCGCTTCC‑CAGTACCTGGGCCGGGGCCTTGACCACCATCATCATGCTGATTGGCGTGCTGCCa                                                                                          >  2:366256/1‑149 (MQ=255)                                                    gtcGGTGCTGCTCTACCCGATCCTCAAGATCACCCGCACCTATCAGCTGTCATCG‑CTGGCCGACCTGCTGGCCTTCCGCTTCC‑CAGTACCTGGGCCGGGGCCTTGACCACCATCATCATGCTGATTGGCGTGCTGCCATTGCTGGCCtt                                                                               <  2:253370/147‑1 (MQ=255)                                                    gcCGGTGCTGCTCTACCCGATCCTCAAGATCACCCGCACCTATCAGCTGTCATCG‑CTGGCCGACCTGCTGGCCTTCCGCTTCC‑CAGTACCTGGGCCGGGGCCTTGACCACCATCATCATGCTGATTGGCGTGCTGCCATTGCTGGCCtt                                                                               >  2:92480/1‑149 (MQ=255)                                                    gcCGGTGCTGCTCTACCCGATCCTCAAGATCACCCGCACCTATCAGCTGTCATCG‑CTGGCCGACCTGCTGGCCTTCCGCTTCC‑CAGTACCTGGGCCGGGGCCTTGACCACCATCATCATGCTGATTGGCGTGCTGCCATTGCTGGCCtt                                                                               <  7:217738/149‑1 (MQ=255)                                                     ccGGTGCTGCTCTACCCGATCCTCAAGATCACCCGCACCTATCAGCTGTCATCG‑CTGGCCGACCTGCTGGCCTTCCGCTTCC‑CAGTACCTGGGCCGGGGCCTTGACCACCATCATCATGCTGATTGGCGTGCTGCCATTGCTGGCCTTg                                                                              <  6:385749/149‑1 (MQ=255)                                                      cGGTGCTGCTCTACCCGATCCTCAAGATCACCCGCACCTATCAGCTGTCATCG‑CTGGCCGACCTGCTGGCCTTCCGCTTCC‑CAGTACCTGGGCCGGGGCCTTGACCACCATCATCATGCTGATTGGCGTGCTGCCATTGCTGGCCTTGc                                                                             <  1:366256/149‑1 (MQ=255)                                                      cGGTGCTGCTCTACCCGATCCTCAAGATCACCCGCACCTATCAGCTGTCATCG‑CTGGCCGACCTGCTGGCCTTCCGCTTCC‑CAGTACCTGGGCCGGGGCCTTGACCACCATCATCATGCTGATTGGCGTGCTGCCATTGCTGGCCTTGc                                                                             <  2:361160/149‑1 (MQ=255)                                                       ggTTCTGCTCTACCCGATCCTCAAGATCACCCGCACCTATCAGCTGTCATCG‑CTGGCCGCCCTGCTGGCCTTCCGCTTCC‑CAGTACCTGGGCCGGGGCGTTGACCACCATCATCATGCTGCTTGGCGTGCTGCCATTGCTGGCCTTg                                                                              >  2:287781/1‑147 (MQ=255)                                                       ggTGCTGCTCTACCCGATCCTCAAGATCACCCGCACCTATCAGCTGTCATCG‑CTGGCCGACCTGCTGGCCTTCCGCTTCC‑CAGTACCTGGGCCGGGGCCTTGACCACCATCATCATGCTGATTGGCGTGCTGCCATTGCTGGCCTTg                                                                              >  6:12373/1‑147 (MQ=255)                                                       ggTGCTGCTCTACCCGATCCTCAAGATCACCCGCACCTATCAGCTGTCATCG‑CTGGCCGACCTGCTGGCCTTCCGCTTCC‑CAGTACCTGGGCCGGGGCCTTGACCACCATCATCATGCTGATTGGCGTGCTGCCATTGCTGGCCTTGCa                                                                            <  5:13649/149‑1 (MQ=255)                                                         tgctgcTCTACCCGATCCTCAAGATCACCCGCACCTATCAGCTGTCATCG‑CTGGCCGACCTGCTGGCCTTCCGCTTCC‑CAGTACCTGGGCCGGGGCCTTGACCACCATCATCATGCTGATTGGCGTGCTGCCATTGCTGGCCTTg                                                                              >  6:382064/1‑145 (MQ=255)                                                            tgctCTACCCGATCCTCAAGATCACCCGCACCTATCAGCTGTCATCG‑CTGGCCGACCTGCTGGCCTTCCGCTTCC‑CAGTACCTGGGCCGGGGCCTTGACCACCATCATCATGCTGATTGGCGTGCTGCCATTGCTGGCCTTGCAGATcc                                                                       >  8:219586/1‑149 (MQ=255)                                                              ctctACCCGATCCTCAAGATCACCCGCACCTATCAGCTGTCATCG‑CTGGCCGACCTGCTGGCCTTCCGCTTCC‑CAGTACCTGGGCCGGGGCCTTGACCACCATCATCATGCTGATTGGCGTGCTGCCATTGCTGGCCTTGCAGATCCAg                                                                     >  1:66539/1‑149 (MQ=255)                                                                ctACCCGATCCTCAAGATCACCCGCACCTATCAGCTGTCATCG‑CTGGCCGACCTGCTGGCCTTCCGCTTCC‑CAGTACCTGGGCCGGGGCCTTGACCACCATCATCATGCTGATTGGCGTGCTGCCATTGCTGGCCTTGCAGATCCAGGc                                                                   >  2:366303/1‑149 (MQ=255)                                                                 tACCCGATCCTCAAGATCACCCGCACCTATCAGCTGTCATCG‑CTGGCCGACCTGCTGGCCTTCCGCTTCC‑CAGTACCTGGGCCGGGGCCTTGACCACCATCATCATGCTGATTGGCGTGCTGCCATTGCTGGCCTTGCAGATCCAgg                                                                    <  1:92480/147‑1 (MQ=255)                                                                  aCCCGATCCTCAAGATCACCCGCACCTATCAGCTGTCATCG‑CTGGCCGACCTGCTGGCCTTCCGCTTCC‑CAGTACCTGGGCCGGGGCCTTGACCACCATCATCATGCTGATTGGCGTGCTGCCATTGCTGGCCTTGCAGATCCAg                                                                     <  2:310/145‑1 (MQ=255)                                                                  aCCCGATCCTCAAGATCACCCGCACCTATCAGCTGTCATCG‑CTGGCCGACCTGCTGGCCTTCCGCTTCC‑CAGTACCTGGGCCGGGGCCTTGACCACCATCATCATGCTGATTGGCGTGCTGCCATTGCTGGCCTTGCAGATCCAg                                                                     >  1:6746/1‑145 (MQ=255)                                                                  aCCCGATCCTCAAGATCACCCGCACCTATCAGCTGTCATCG‑CTGGCCGACCTGCTGGCCTTCCGCTTCC‑CAGTACCTGGGCCGGGGCCTTGACCACCATCATCATGCTGATTGGCGTGCTGCCATTGCTGGCCTTGCAGATCCAg                                                                     <  2:6746/145‑1 (MQ=255)                                                                  aCCCGATCCTCAAGATCACCCGCACCTATCAGCTGTCATCG‑CTGGCCGACCTGCTGGCCTTCCGCTTCC‑CAGTACCTGGGCCGGGGCCTTGACCACCATCATCATGCTGATTGGCGTGCTGCCATTGCTGGCCTTGCAGATCCAg                                                                     >  1:310/1‑145 (MQ=255)                                                                    ccGATCCTCAAGATCACCCGCACCTATCAGCTGTCATCG‑CTGGCCGACCTGCTGGCCTTCCGCTTCC‑CAGTACCTGGGCCGGGGCCTTGACCACCATCATCATGCTGATTGGCGTGCTGCCATTGCTGGCCTTGCAGATCCAGGCGGTg                                                               >  1:220237/1‑149 (MQ=255)                                                                     cGATCCTCAAGATCACCCGCACCTATCAGCTGTCATCG‑CTGGCCGACCTGCTGGCCTTCCGCTTCC‑CAGTACCTGGGCCGGGGCCTTGACCACCATCATCATGCTGATTGGCGTGCTGCCATTGCTGGCCTTGCAGATCCAGGCGGTgg                                                              <  1:366303/149‑1 (MQ=255)                                                                      gATCCTCAAGATCACCCGCACCTATCAGCTGTCATCG‑CTGGCCGACCTGCTGGCCTTCCGCTTCC‑CAGTACCTGGGCCGGGGCCTTGACCACCATCATCATGCTGATTGGCGTGCTGCCATTGCTGGCCTTGCAGATCCAGGCGGTGGc                                                             <  3:95242/149‑1 (MQ=255)                                                                      gATCCTCAAGATCACCCGCACCTATCAGCTGTCATCG‑CTGGCCGACCTGCTGGCCTTCCGCTTCC‑CAGTACCTGGGCCGGGGCCTTGACCACCATCATCATGCTGATTGGCGTGCTGCCATTGCTGGCCTTGCAGATCCAGGCGGTGGc                                                             <  5:12373/149‑1 (MQ=255)                                                                      gATCCTCAAGATCACCCGCACCTATCAGCTGTCATCG‑CTGGCCGACCTGCTGGCCTTCCGCTTCC‑CAGTACCTGGGCCGGGGCCTTGACCACCATCATCATGCTGATTGGCGTGCTGCCATTGCTGGCCTTGCAGATCCAGGCGGTGGc                                                             <  5:382064/149‑1 (MQ=255)                                                                      gATCCTCAAGATCACCCGCACCTATCAGCTGTCATCG‑CTGGCCGACCTGCTGGCCTTCCGCTTCC‑CAGTACCTGGGCCGGGGCCTTGACCACCATCATCATGCTGATTGGCGTGCTGCCATTGCTGGCCTTGCAGATCCAGGCGGTCGc                                                             <  1:378966/149‑1 (MQ=255)                                                                       aTCCTCAAGATCACCCGCACCTATCAGCTGTCATCG‑CTGGCCGACCTGCTGGCCTTCCGCTTCC‑CAGTACCTGGGCCGGGGCCTTGACCACCATCATCATGCTGATTGGCGTGCTGCCATTGCTGGCCTTGCAGATCCAGGCGGTGGcc                                                            <  2:220237/149‑1 (MQ=255)                                                                           tCAAGATCACCCGCACCTATCAGCTGTCATCG‑CTGGCCGACCTGCTGGCCTTCCGCTTCC‑CAGTACCTGGGCCGGGGCCTTGACCACCATCATCATGCTGATTGGCGTGCTGCCATTGCTGGCCTTGCAGATCCAGGCGGTGGCCGAtt                                                        >  7:156845/1‑149 (MQ=255)                                                                            cAAGATCACCCGCACCTATCAGCTGTCATCG‑CTGGCCGACCTGCTGGCCTTCCGCTTCC‑CAGTACCTGGGCCGGGGCCTTGACCACCATCATCATGCTGATTGGCGTGCTGCCATTGCTGGCCTTGCAGATCCAGGCGGTGGCCGATTc                                                       >  3:63549/1‑149 (MQ=255)                                                                              aGATCACCCGCACCTATCAGCTGTCATCG‑CTGGCCGACCTGCTGGCCTTCCGCTTCC‑CAGTACCTGGGCCGGGGCCTTGACCACCATCATCATGCTGATTGGCGTGCTGCCATTGCTGGCCTTGCAGATCCAGGCGGTGGCCGATTCGa                                                     >  1:171468/1‑149 (MQ=255)                                                                              aGATCACCCGCACCTATCAGCTGTCATCG‑CTGGCCGACCTGCTGGCCTTCCGCTTCC‑CAGTACCTGGGCCGGGGCCTTGACCACCATCATCATGCTGATTGGCGTGCTGCCATTGCTGGCCTTGCAGATCCAGGCGGTGGCCGATTCGa                                                     <  8:156845/149‑1 (MQ=255)                                                                              aGATCACCCGCACCTATCAGCTGTCATCG‑CTGGCCGACCTGCTGGCCTTCCGCTTCC‑CAGTACCTGGGCCGGGGCCTTGACCACCATCATCATGCTGATTGGCGTGCTGCCATTGCTGGCCTTGCAGATCCAGGCGGTGGCCGATTCGa                                                     <  7:219586/149‑1 (MQ=255)                                                                               gATCACCCGCACCTATCAGCTGTCATCG‑CTGGCCGACCTGCTGGCCTTCCGCTTCC‑CAGTACCTGGGCCGGGGCCTTGACCACCATCATCATGCTGATTGGCGTGCTGCCATTGCTGGCCTTGCAGATCCAGGCGGTGGCCGATTCGAt                                                    >  2:208773/1‑149 (MQ=255)                                                                                 tCACCCGCACCTATCAGCTGTCATCG‑CTGGCCGACCTGCTGGCCTTCCGCTTCC‑CAGTACCTGGGCCGGGGCCTTGACCACCATCATCATGCTGATTGGCGTGCTGCCATTGCTg                                                                                    <  4:157881/115‑1 (MQ=255)                                                                                 tCACCCGCACCTATCAGCTGTCATCG‑CTGGCCGACCTGCTGGCCTTCCGCTTCC‑CAGTACCTGGGCCGGGGCCTTGACCACCATCATCATGCTGATTGGCGTGCTGCCATTGCTg                                                                                    >  3:157881/1‑115 (MQ=255)                                                                                       gCACCTATCAGCTGTCATCG‑CTGGCCGACCTGCTGGCCTTCCGCTTCC‑CAGTACCTGGGCCGGGGCCTTGACCACCATCATCATGCTGATTGGCGTGCTGCCATTGCTGGCCTTGCAGATCCAGGCGGTGGCCGATTCGATCAGTATcc                                            >  2:36874/1‑149 (MQ=255)                                                                                           cTATCAGCTGTCATCG‑CTGGCCGACCTGCTGGCCTTCCGCTTCC‑CAGTACCTGGGCCGGGGCCTTGACCACCATCATCATGCTGATTGGCGTGCTGCCATTGCTGGCCTTGCAGATCCAGGCGGTGGCCGATTCGATCAGTATCCTTAc                                        >  2:228913/1‑149 (MQ=255)                                                                                           cTATCAGCTGTCATCG‑CTGGCCGACCTGCTGGCCTTCCGCTTCC‑CAGTACCTGGGCCGAGGCCTTGACCACCATCATCATGCTGATTGGCGTGCTGCCATTGCTGGCCTTGCAGATCCAGGCGGTGGCCGATTCGATCAGTATCCTTAc                                        >  1:25632/1‑149 (MQ=255)                                                                                             aTCAGCTGTCTTCG‑CTGGCCGACCTGCTGGCCTTCCGCTTCC‑CAGTACCTGGGCCGGGGCCTTGACCACCATCATCATGCTGATTGGCGTGCTGCCATTGCTGGCCTTGCAGATCCAGGCGGTGGCCGATTCGATCAGTATCCTTACCg                                      >  8:173052/1‑149 (MQ=255)                                                                                              tCAGCTGTCATCG‑CTGGCCGACCTGCTGGCCTTCCGCTTCC‑CAGTACCTGGGCCGGGGCCTTGACCACCATCATCATGCTGATTGGCGTGCTGCCATTGCTGGCCTTGCAGATCCAGGCGGTGGCCGATTCGATCAGTATCCTTACCgg                                     <  3:380192/149‑1 (MQ=255)                                                                                              tCAGCTGTCATCG‑CTGGCCGACCTGCTGGCCTTCCGCTTCC‑CAGTACCTGGGCCGGGGCCTTGACCACCATCATCATGCTGATTGGCGTGCTGCCATTGCTGGCCTTGCAGATCCAGGCGGTGGCCGATTCGATCAGTATCCTTACCg                                      <  7:127055/148‑1 (MQ=255)                                                                                                aGCTGTCTTCG‑CTGGCCGACCTGCTGGCCTTCCGCTTCC‑CAGTACCTGGGCCGGGGCCTTGACCACCATCATCATGCTGATTGGCGTGCTGCCATTGCTGGCCTTGCAGATCCAGGCGGTGGCCGATTCGATCAGTATCCTTACCGGt                                    <  7:173052/148‑1 (MQ=255)                                                                                                aGCTGTCATCG‑CTGGCCGACCTGCTGGCCTTCCGCTTCC‑CAGTACCTGGGCCGGGGCCTTGACCACCATCATCATGCTGATTGGCGTGCTGCCATTGCTGGCCTTGCAGATCCAGGCGGTGGCCGATTCGATCAGTATCCTTAc                                        <  5:293080/144‑1 (MQ=255)                                                                                                aGCTGTCATCG‑CTGGCCGACCTGCTGGCCTTCCGCTTCC‑CAGTACCTGGGCCGGGGCCTTGACCACCATCATCATGCTGATTGGCGTGCTGCCATTGCTGGCCTTGCAGATCCAGGCGGTGGCCGATTCGATCAGTATCCTTAc                                        >  6:293080/1‑144 (MQ=255)                                                                                                aGCTGTCATCG‑CTGGCCGACCTGCTGGCCTTCCGCTTCC‑CAGTACCTGGGCCGGGGCCTTGACCACCATCATCATGCTGATTGGCGTGCTGCCATTGCTGGCCTTGCAGATCCAGGCGGTGGCCGATTCGATCAGTATCCTTACCGGt                                    <  1:228913/148‑1 (MQ=255)                                                                                                   tGTCATCG‑CTGGCCGACCTGCTGGCCTTCCGCTTCC‑CAGTACCTGGGCCGGGGCCTTGACCACCATCATCATGCTGATTGGCGTGCTGCCATTGCTGGCCTTGCAGATCCAGGCGGTGGCCGATTCGATCAGTATCCTTACCGGTGAAc                                >  6:341225/1‑149 (MQ=255)                                                                                                            cTGGCCGACCTGCTGGCCTTCCGCTTCC‑CAGTACCTGGGCCGTGGCCTTGACCACCATCATCATGCTGATTGGCGTGCTGCCATTGCTGGCCTTGCAGATCCAGGCGGTGGCCGATTCGATCAGTATCCTTACCGGTGAACCGGTCaaa                        <  2:25632/149‑1 (MQ=255)                                                                                                                  gACCTGCTGGCCTTCCGCTTCC‑CAGTACCTGGGCCGGGGCCTTGACCACCATCATCATGCTGATTGGCGTGCTGCCATTGCTGGCCTTGCAGATCCAGGCGGTGGCCGATTCGATCAGTATCCTTACCGGTGAACCGGTCAAAGCCCgg                  <  2:171468/149‑1 (MQ=255)                                                                                                                        ctgGCCTTCCGCTTCC‑CAGTACCTGGGCCGGGGCCTTGACCACCATCATCATGCTGATTGGCGTGCTGCCATTGCTGGCCTTGCAGATCCAGGCGGTGGCCGATTCGATCAGTATCCTTACCGGTGAACCGGTCAAAGCCCGGGTgg              <  2:66539/147‑1 (MQ=255)                                                                                                                           gCCTTCCGCTTCC‑CAGTACCTGGGCCGGGGCCTTGACCACCATCATCATGCTGATTGGCGTGCTGCCATTGCTGGCCTTGCAGATCCAGGCGGTGGCCGATTCGATCAGTATCCTTACCGGTGAACCGGTCAAAGCCCGGGTGgccttt         <  5:341225/149‑1 (MQ=255)                                                                                                                             cttccgcttcc‑cAGTACCTGGGCCGGGGCCTTGACCACCATCATCATGCTGATTGGCGTGCTGCCATTGCTGGCCTTGCAGATCCAGGCGGTGGCCGATTCGATCAGTATCCTTACCGGTGAACCGGTCAAAGCCCGGGTGgcctttgc       >  1:391798/1‑149 (MQ=255)                                                                                                                             cttccgcttcc‑cAGTACCTGGGCCGGGGCCTTGACCACCATCATCATGCTGATTGGCGTGCTGCCATTGCTGGCCTTGCAGATCCAGGCGGTGGCCGATTCGATCAGTATCCTTACCGGTGAACCGGTCAAAGCCCGGGTGgcctttgc       <  7:155009/149‑1 (MQ=255)                                                                                                                             cttccgcttcc‑cAGTACCTGGGCCGGGGCCTTGACCACCATCATCATGCTGATTGGCGTGCTGCCATTGCTGGCCTTGCAGATCCAGGCGGTGGCCGATTCGATCAGTATCCTTACCGGTGAACCGGTCAAAGCCCGGGTGgcctttgc       >  6:105797/1‑149 (MQ=255)                                                                                                                              ttccgcttcc‑caGTACCTGGGCCGGGGCCTTGACCACCATCATCATGCTGATTGGCGTGCTGCCATTGCTGGCCTTGCAGATCCAGGCGGTGGCCGATTCGATCAGTATCCTTACCGGTGAACCGGTCAAAGCCCGGGTGgcctttgcc      >  8:150209/1‑149 (MQ=255)                                                                                                                                  gcttcc‑caGTACCTGGGCCGGGGCCTTGACCACCATCATCATGCTGATTGGCGTGCTGCCATTGCTGGCCTTGCAGATCCAGGCGGTGGCCGATTCGATCAGTATCCTTACCGGTGAACCGGTCAAAGCCCGGGTGGCCTTTGCCtttt  <  1:36874/149‑1 (MQ=255)                                                                                                                                        |                                                                                                                                                CTACGGCTTCCTTGCCTGTTACCTGGGGGTGTCTGGCGCATTCCTGCTGGCGCCGGTGCTGCTCTACCCGATCCTCAAGATCACCCGCACCTATCAGCTGTCATCG‑CTGGCCGACCTGCTGGCCTTCCGCTTCCGCAGTACCTGGGCCGGGGCCTTGACCACCATCATCATGCTGATTGGCGTGCTGCCATTGCTGGCCTTGCAGATCCAGGCGGTGGCCGATTCGATCAGTATCCTTACCGGTGAACCGGTCAAAGCCCGGGTGGCCTTTGCCTTTT  >  NC_002947/5333774‑5334051

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑