| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1440000 = | NA (NA) | 89 (1.400) | 68/260 | 0.0 | 100% | intergenic (‑331/‑328) | yveA/PP_1260 | aspartate‑proton symporter/transposase |
| ? | NC_002947 | = 1844451 | 0 (0.000) | coding (343/2754 nt) | gacS | sensor protein GacS | |||||
CGCAAAGCGTGGGGATAGGCTCAAAGCCATACCGGATAAGGGTTTGAGAGATGCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTT‑CCGCAGCGACGCTGACATTTTGAAAAAGAAAA‑GGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTGTTAGG > NC_002947/1439862‑1440135 | cGCAAAGCGTGGGGATAGGCTCAAAGCCATACCGGATAAGGGTTTGAGAGATGCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGcc > 2:144162/1‑149 (MQ=255) gCAAAGCGTGGGGATAGGCTCAAAGCCATACCGGATAAGGGTTTGAGAGATGCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGccc > 2:215950/1‑149 (MQ=255) aGCGTGGGGATAGGCTCAAAGCCATACCGGATAAGGGTTTGAGAGAAGCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTcc < 5:63389/149‑1 (MQ=255) ggCTCAAAGCCATACCGGATAAGGGTTTGAGAGATGCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTg < 1:215950/148‑1 (MQ=255) tCAAAGCCATACCGGATAAGGGTTTGAGAGATGCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTcgc > 3:358073/1‑149 (MQ=255) aaaGCCATACCGGATAAGGGTTTGAGAGATGCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTcgcg > 2:237560/1‑148 (MQ=255) aCCGGATAAGGGTTTGAGAGATGCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTgcg > 5:177389/1‑132 (MQ=255) aCCGGATAAGGGTTTGAGAGATGCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTgcg < 6:177389/132‑1 (MQ=255) gATAAGGGTTTGAGAGATGCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAg > 4:42117/1‑149 (MQ=255) tttGAGAGATGCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACgg > 8:192773/1‑149 (MQ=255) gagagaTGCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATAACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCt > 8:259552/1‑148 (MQ=255) agagaTGCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCtt > 2:226860/1‑148 (MQ=255) agagaTGCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTc < 7:42265/149‑1 (MQ=255) agagaTGCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTc < 4:358073/149‑1 (MQ=255) agaTGCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACgg < 7:279126/143‑1 (MQ=255) agaTGCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACgg > 8:279126/1‑143 (MQ=255) aTGCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGtt > 8:266380/1‑149 (MQ=255) tGCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTT‑c > 4:12589/1‑149 (MQ=255) cAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTT‑cc < 7:266380/148‑1 (MQ=255) cAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGAGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTT‑CCg > 4:197337/1‑149 (MQ=255) aGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTT‑CCGc < 3:42117/149‑1 (MQ=255) cTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATg > 7:57769/1‑123 (MQ=255) cTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATg < 8:57769/123‑1 (MQ=255) gTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTT‑CCGCAGCGACg > 4:179878/1‑149 (MQ=255) ccGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAACCATGAGGTGTACGGCTTCAGTT‑CCGCAGCGACGCt > 3:314168/1‑148 (MQ=255) gCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTT‑CCGCAGCGACGCTGACa > 5:81415/1‑149 (MQ=255) ccTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCtt > 6:54856/1‑125 (MQ=255) cTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCgcag < 7:218462/103‑1 (MQ=255) cTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCgcag > 8:218462/1‑103 (MQ=255) cgcgGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTT‑CCGCAGCGACGCTGACATTTTGa < 8:239980/148‑1 (MQ=255) gcgGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTT‑CCGCAGCGACGCTGACATTTTGaa > 2:35321/1‑148 (MQ=255) gggTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTT‑CCGCAGCGACGCTGACATTTTGaaaaa < 7:257330/149‑1 (MQ=255) gTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTT‑CCGCAGCGACGCTGACAtttt < 2:265695/141‑1 (MQ=255) gTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTT‑CCGCAGCGACGCTGACATTTTGAaaaag > 8:343757/1‑148 (MQ=255) gTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTT‑CCGAAGCGACGCTGACATTTTGagaacgg > 1:265695/1‑146 (MQ=255) aCCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCCGCAGCGACGCTGACATTTTGAaaaagaaaa < 1:237560/149‑1 (MQ=255) aCCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTT‑CCGCAGCGACGCTGACATTTTGAaaaagaaaa‑g > 4:24594/1‑149 (MQ=255) cccGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTAGGGCTTCAGTT‑CCGCAGCGACGCGGACATTTTGAAAAAGAAAA‑gg > 4:259484/1‑149 (MQ=255) cccGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTT‑CCGCAGCGACGCTGACATTTTGAAAAAGAAAA‑gg > 2:388719/1‑149 (MQ=255) cTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTT‑CCGCAGCGACGCTGACATTTTGAAAAAGAAAA‑GGCGGt < 7:192773/149‑1 (MQ=255) cTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTT‑CCGCAGCGACGCTGACATTTTGAAAAAGAAAA‑GGCGGtt < 6:81415/147‑1 (MQ=255) aCAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTT‑CCGCAGCGACGCTGACATTTTGAaaaagaaa < 6:116354/137‑1 (MQ=255) aCAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTT‑CCGCAGCGACGCTGACATTTTGAaaaagaaa > 5:116354/1‑137 (MQ=255) aCAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTT‑CCGCAGCGACGCTGACATTTTGAAAAAGAAAA‑GGCGGtt > 7:218419/1‑145 (MQ=255) aCAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTT‑CCGCAGCGACGCTGACATTTTGAAAAAGAAAA‑GGCGGtt < 8:218419/145‑1 (MQ=255) aGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTATAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTAAGGCTTCAGTT‑CCGCAGCGACGCTGACATTTTGAAAAAGAAAA‑GGCGGTTGGCCCg > 3:107088/1‑149 (MQ=255) gTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTT‑CCGCAGCGACGCTGACAttt < 8:61676/122‑1 (MQ=255) gTACGGCGCAGAATTCGAAATCAGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTT‑CCGCAGCGACGCTGACAttt > 7:61676/1‑122 (MQ=255) tACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTT‑CCGCAGCGACGCTGACATTTTGAAAAAGAAAA‑GGCGGTTGGccctacc < 4:314168/149‑5 (MQ=255) gcgcAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTT‑CCGCAGCGACGCTGACATTTTGAAAAAGAAAA‑GGCGGTTGGCCCGGTAGGGc > 1:102916/1‑149 (MQ=255) aaTTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCACTGTCCCGCAGCAAACATAACGTGTACGGCTTCCCTA‑ACCCACCCACGCTGACAATTTGAAAAAGAAAA‑CGCCGTAGGCCCGGTAGGTCCacacc > 4:37301/1‑145 (MQ=14) gAAATCTGTGGGGGCCCTGTAGGAGATCACCCACCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGACGTGTACGGCTTCAGTT‑CCCCAGCGACGCTGACATTTTGAAAAAGAAAACGTCGGTGGGCCCTACCGGGCCAACCGCCtt < 1:226860/149‑1 (MQ=14) cTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTT‑CCGCAGCGACGCTGACATTTTGAAAAAGAAAA‑GGCGGTTGGCCCGGTAGGGCCAgc < 5:275022/137‑1 (MQ=37) tgGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTT‑CCGCAGCGACGCTGACATTTTGAAAAAGAAAA‑GGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTg < 3:179878/148‑1 (MQ=33) tgGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTT‑CCGCAGCGACGCTGACATTTTGAAAAAGAAAA‑GGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTGt > 2:252204/1‑149 (MQ=33) gggCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTT‑CCGCAGCGACGCTGACATTTTGAAAAAGAAAA‑GGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTGTTAg > 8:201068/1‑149 (MQ=31) ggCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTT‑CCGCAGCGACGCTGACATTTTGAAAAAGAAAA‑GGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTGTTAgg < 7:259552/149‑1 (MQ=11) | CGCAAAGCGTGGGGATAGGCTCAAAGCCATACCGGATAAGGGTTTGAGAGATGCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTT‑CCGCAGCGACGCTGACATTTTGAAAAAGAAAA‑GGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTGTTAGG > NC_002947/1439862‑1440135 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |