| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_002947 | 3,951,161 | A→T | intergenic (‑125/+70) | PP_3486 ← / ← PP_3487 | cytochrome c/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,951,161 | 0 | A | T | 91.9% | 106.4 / ‑5.1 | 37 | intergenic (‑125/+70) | PP_3486/PP_3487 | cytochrome c/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base T (19/15); minor base G (1/2); total (20/17) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.84e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGA‑GCGCTGCGCGCTCTTATCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAG‑GCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATCGCCGCTGGCGGTGCATCCGGGCG > NC_002947/3951040‑3951302 | aaGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGA‑GCGCTGCGCGCTCCTTTCGCGAc > 1:353843/1‑129 (MQ=255)aaGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGA‑GCGCTGCGCGCTCCTTTCGCGAc < 2:353843/129‑1 (MQ=255) aCGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGA‑GCGCTGCGCGCTCCTTTAGCGACGCCAGGCCGCTc > 5:288535/1‑137 (MQ=255) gTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGA‑GCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGc > 3:82785/1‑129 (MQ=255) gTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGA‑GCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGc < 4:82785/129‑1 (MQ=255) cATATCGCAAGCCCTGTGGGAGCGGCCATTCGTCGCGAAAAGGCTGGGCCCCAGCCCCCGCAGTGGCAGCGGAAGCCCAGAAAAAGGGGG‑GCGCTGCGCGCGCCAGTGGCGACGCCAGGCCGCTCCCCCCAAAGCGGCGGCCACAGAgg > 4:273076/1‑149 (MQ=255) cccTGGGGGCGCGGCTTTGGGGCGCTAATGGGCTGCGCAGCACCCCCGGCTGGGCCAGCTCACGCGAATAAAGCGGGTC‑GCGCGGCGCGCTCCTTTCGCGACGAATGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCa < 2:266790/149‑1 (MQ=255) ggCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGA‑GCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAG‑GCGGCCCATGa > 5:375068/1‑149 (MQ=255) gCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGA‑GCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAG‑GCGGCCCATGa > 1:106660/1‑148 (MQ=255) gAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGA‑GCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAG‑GCGGCCCATGATACTCaccgaccg > 4:210619/1‑149 (MQ=255) aaGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGA‑GCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAG‑GCGGCCCATGATACTCACCGACCGGc > 3:307435/1‑149 (MQ=255) tGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGA‑GCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAG‑GCGGCCCATGATACTCACCGACCGGCCAGCgg > 3:277472/1‑149 (MQ=255) tGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGA‑GCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAG‑GCGGCCCATGATACTCACCGACCGGCCAGCgg > 4:361111/1‑149 (MQ=255) gccgcagcCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGA‑GCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAG‑GCGGCCCATGATACTCACCGACCGGCCAGCGGCTg < 2:106660/146‑1 (MQ=255) cagcagCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGAGGCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAG‑GCGGCCCATGATACTCACCGACCGGCCAGCGGCTg > 1:76910/1‑149 (MQ=255) cgcagcCCGGGCAGGGGCAGCTCACGCCCACAACGAGGGGC‑CCGCGGCGCGCGCCTGGCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAGTGCGGCCCATGATACTCACCGACCGGCCAGCGGCTgg < 1:268181/148‑1 (MQ=255) gcagcCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGA‑GCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAG‑GCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGt < 6:375068/149‑1 (MQ=255) gcCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGA‑GCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAG‑GCGGCCCATGATACTCACCGACCGGCCAGCgg > 2:102153/1‑140 (MQ=255) gcCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGA‑GCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAG‑GCGGCCCATGATACTCACCGACCGGCCAGCgg < 1:102153/140‑1 (MQ=255) cccGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGA‑GCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGAt > 4:174046/1‑84 (MQ=255) cccGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGA‑GCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGAt < 3:174046/84‑1 (MQ=255) cGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGA‑GCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAG‑GCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGc > 6:119051/1‑149 (MQ=255) tGGCAGCTCAAGCGCAGAAAGAGGGGA‑GCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAG‑GCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATg < 5:119051/149‑1 (MQ=255) aaGCGCAGAAAGAGGGGA‑GCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAG‑GCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTggg < 8:239452/147‑1 (MQ=255) aaGCGCAGAAAGAGGGGA‑GCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAG‑GCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTggg < 4:307435/147‑1 (MQ=255) aaGCGCAGAAAGAGGGGA‑GCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAG‑GCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTggg > 7:239452/1‑147 (MQ=255) gcgcAGAAAGAGGGGA‑GCGCTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAG‑GCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAAt > 5:213641/1‑149 (MQ=255) aaggA‑GCGCGCAGCGCTCCCTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAG‑GCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATcgcc < 3:47676/140‑1 (MQ=255) aaggA‑GCGCGCAGCGCTCCCTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAG‑GCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATcgcc > 4:47676/3‑142 (MQ=255) ggcgcgcTGCCCGCTCCGTTCGCGACGCACGCCCGCGCCCACAAACGCCGCCGCCACCGCGGCCACTCCCCCCC‑GCGGCCCCTGCTACTCCCCGACCGGCCAGCGGCGGGGTCAACCGCTGCACGCGCTGCGCAATCGCCGCTGGCGGt < 4:277472/146‑1 (MQ=255) gcTGCGCGCTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAG‑GCGGCCCATGATACTCACCGACCGGCCACCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATCGCCGCTGGCGGTGCATc > 3:300570/1‑149 (MQ=255) cgcgcTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAG‑GCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATCGCCGCTGGCGGTGCATCCggg < 3:361111/149‑1 (MQ=255) cgcgcTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAG‑GCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATCGCCGCTGGCGGTGCATCCggg > 5:50965/1‑149 (MQ=255) cgcgcTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAG‑GCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATCGCCGCTGGCGGTGCATCCggg < 2:76910/149‑1 (MQ=255) gcgcTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAG‑GCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATCGCCGCTGGCGGTGCATCCGGGc > 3:3664/1‑149 (MQ=255) gcgcTCCTGGCGCCACGAACGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAG‑GCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATCGCCGCTGGCGGTGCATCCGGGc < 5:143069/149‑1 (MQ=255) cgcTCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAG‑GCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATCGCCGCTGGCGGTGCATCCGGGCg < 6:213641/149‑1 (MQ=255) | AAGCACGCAGGTAAGCCATATCGCAAGCCCTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCTGCGCAGCAGCCCCGGCAGTGGCAGCTCAAGCGCAGAAAGAGGGGA‑GCGCTGCGCGCTCTTATCGCGACGCAAGGCCGCTCCCACAAAAGCGGATGCCACAGAGGCCAATTCCCCAG‑GCGGCCCATGATACTCACCGACCGGCCAGCGGCTGGGTCAACAGCTGCATGCGCTGGGCAATCGCCGCTGGCGGTGCATCCGGGCG > NC_002947/3951040‑3951302 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |