| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_002947 | 1,070,248 | +GA | intergenic (+48/+94) | aroP‑I → / ← PP_0928 | aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,070,246 | 1 | . | G | 92.9% | 30.5 / ‑2.4 | 14 | intergenic (+46/+96) | aroP‑I/PP_0928 | aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base G (6/7); total (6/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.73e-01 | |||||||||||
| * | NC_002947 | 1,070,246 | 2 | . | A | 92.9% | 36.7 / ‑2.5 | 14 | intergenic (+46/+96) | aroP‑I/PP_0928 | aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base A (6/7); total (6/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.57e-01 | |||||||||||
TCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGT‑‑G‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGT > NC_002947/1070120‑1070371 || acGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCgcggg > 3:241705/2‑147 (MQ=255) gTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCgcgggcgg < 8:41494/147‑1 (MQ=255) tCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGTGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCAGGCGGCGCTCGAtc < 6:91136/146‑1 (MQ=39) aTCGCTGTGCGGTGGGTGGCGTTCCAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTGGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATg < 7:251931/147‑1 (MQ=37) tgtgctgtgGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGc > 5:35051/1‑147 (MQ=255) tgtgGGTGGCTTTCAAGCTGAAGAAGGCGCGCCAGGCCAAGGGCTGATCGGGCTCGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTaaa < 5:48621/147‑1 (MQ=38) ggtggCTTTCAAGCTGAAGCAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATCCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCa < 3:180388/147‑1 (MQ=38) ttaacccTGAAGAAGGCTCGCCTGGCCAAGGGATTATAGTGTTTTATCGTAATGGTTATCCCGTTAGGTATTCGGAACCTGT‑‑GATATCCATCGCCTCGCGGGCGGCGCTAGATCTCACAGGCGATGAAAGCCTAAATGCATGCGTCt < 4:142594/141‑1 (MQ=255) gCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTggcgg < 3:80675/147‑1 (MQ=255) ggTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGCGCGCCGCGCGGGCGGCGCTCGTTCTCGAAGGCGATGAAAGCCTAAAGGCATGCGTGTGGCGGCCCTGACGCGTGCCCCTTCCATGCGCCTCAAtgc > 1:237739/1‑147 (MQ=37) gacgcaTGCCTTTAGGCTTTCATCGCCTGTGAG‑‑ATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCCGAAAACCTAACGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCaa > 2:246523/6‑146 (MQ=14) gTATGCCGTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAgcac > 7:231898/1‑147 (MQ=255) cGTTAGGTTTTCTGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAATGCAAGCGTCTGGCGGCCCGGCCGCGTTCCCCGTCCATGCCCCGCAAAGATGCCTCCGCCCAGCACGcacac > 7:91546/1‑146 (MQ=25) gTTAGGTTTTCGGCGCCTGTGAG‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAgt < 8:231898/147‑1 (MQ=255) || TCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCCTGT‑‑G‑‑ATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGT > NC_002947/1070120‑1070371 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |