| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NC_002947 | 5,555,608 | +GCC | intergenic (‑84/+87) | PP_4887 ← / ← PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5555608 | 2 (0.040) | 39 (0.820) +GCC |
35/278 | 0.3 | 95.2% | intergenic (‑84/+87) | PP_4887/PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer |
| ? | NC_002947 | 5555609 = | 2 (0.040) | intergenic (‑85/+86) | PP_4887/PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer | |||||
GCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGT‑CGCGAAAGGGCCGCATAG‑CG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5555473‑5555608‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGG‑ACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGCACCT > NC_002947/5555609‑5555753 ||| GCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGT‑CGCGAAAGGGCCGCATAG‑CGGCCCCGGCAAT > 4:25518/1‑147 AGGAACTTCAGGTCGGCCTGGGCAGCGATTTGGCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGT‑CGCGAAAGGGCCGCATAG‑CGGCCCCGGCAATTT < 8:75043/147‑1 AGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGT‑CGCGAAAGGGCCGCATAG‑CGGCCCCGGCAATT < 5:35657/146‑1 ATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGT‑CGCGAAAGGGCCGCATAG‑CGGCCCCGGCAATTTCCGCG < 1:65331/147‑1 CAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTTTGT‑AGCGAAACGGCCGCCTAGAGGGCCCGGGCAATTT‑CGCGTGg > 4:225390/1‑146 GGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGT‑CGCGAAAGGGCCGCATAG‑CGGCCCCGGCAATTTCCGCGTGTAT < 1:262898/147‑1 GTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGT‑CGCGAAAGGGCCGCATAG‑CGGCCCCGGCAATTTCCGCGTGTATG < 5:248319/147‑1 GTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGGCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGT‑CGCGAAAGGGCCGCATAG‑CGGCCCCGGCAATTTCCGCGTGTATG < 1:234747/147‑1 TCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGT‑AGCGCAACGGCCGCCTAG‑CGGCCCCGGCAAATTGCCCGGGTATt > 4:188599/1‑145 GGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTTT‑CGCGAAAAGGCCGCATAG‑CGGCCCAGGCAATTTCCGCGTTTATGCA > 2:174186/1‑146 GGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCCGGCAAAGGGCC‑CAAAG‑GGGGCCCCGGAATTTCCGCGTGGATGCGAGAAA > 3:40912/1‑145 tCAGCTATTAGTCTGGCGTACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGGATTGTGT‑CGCGAAAGGGCCGCATAG‑CGGCCCCGGCAATTTCCGCGTGTATGCAACAAAC < 6:19614/144‑1 GCAGCGATTAGTCTGGCGGACATGACCAACTCGTTTTGTTATGTGTCGCCGACAGCATAGCAACACCGCTCAGGGGGGGTAGCGGCATTGTGG‑CGCGAATGGGCCGCATAG‑CGGCCCCGGCAATTTCCGCGTGTATGCAACAAAC < 6:23282/145‑1 CGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGT‑CGCGAAAGGGCCGCATAG‑CGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATG < 3:25518/147‑1 GCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGT‑CGCGAAAGGGCCGCATAG‑CGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCG > 6:203383/1‑147 AACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGT‑CGCGAAAGGGCCGCATAG‑CGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGAC < 2:33565/147‑1 TTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGT‑CGCGAAAGGGCCGCATAG‑CGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGGCAC > 2:175260/1‑141 TTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGT‑CGCGAAAGGGCCGCATAG‑CGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGGCAC < 1:175260/141‑1 TGTCATGTGCCGCCGACAGCATCGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGT‑CGCGAAAGGGCCGCATAG‑CGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCC < 3:183452/146‑1 TCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGT‑AGCGAAAGGGCCGCATAG‑CGGCCCCGGCAATTTGAGCGGGTATGGAACAAACCTGGGGCTGCGATGCAGCCCTTTCGGGACACACGGGCCc > 8:231883/1‑145 GCCTACAGCATACCAACACCGCTCAGGGGTGGGAGCGGCCTTGTGT‑CGCGAACGGGCCCCATAG‑CGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGG‑ACCG < 8:133952/147‑1 CGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGT‑AGCGAAAGGGCCGCATAG‑CGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGG‑ACCGC > 2:39260/1‑146 GACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGT‑CGCGAAAGGGCCGCATAG‑CGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCCTTCGCGACACAAGGCCCACAAAGG‑ACCGC > 4:22520/1‑145 AACACCGCTCAGGTGTGGGAGCGGCCTTGTGT‑CGCGAAAGGGCCGCATAG‑CGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGG‑ACCGCGCAGGCTTCAGG < 3:188599/146‑1 GCTCAGGTGTGGGAGCGGCCTTGTGT‑CGCGAAAGGGCCGCATAG‑CGGCCCCGGCAATTTACGCGGGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACCCAAGGCCCCCAAAGG‑ACCGCGCAGGCTTGAGGGCCCGA > 1:76405/1‑146 GGTGTGGGAGCGGCCTTGTTT‑AGCGAAAGGGCCGCATAT‑CCGCCCCGGCAATTTACGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTAGCGACACAAGGCCCACAAAAG‑ACCGCGCAGGCTTCAGGCCCCGAAATGGC > 2:27797/1‑147 TGTGGGAGCGGCCTTGTGT‑CGCGAAAGGGCCGCATAG‑CGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGG‑ACCGCGCAGGCTTCAGGCCCGGAACTGGCC < 1:117696/146‑1 GGGAGCGGCCTTGTGT‑CGCGAAAGGGCCGCATAG‑CGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGTACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAG < 1:174186/147‑1 GAGCGGCCTTGTGT‑CGCGAAAGGGCCGCATAG‑CGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGG‑ACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCT < 1:27797/147‑1 CCTTGTGT‑CGCGAAAGGGCCGCATGG‑CGGCCCCGGCAATTTCCGCGTGTATGCAACGAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGG‑ACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCG > 2:96786/1‑147 CCTTGTGT‑CGCGAAAGGGCCGCATAG‑CGGCCCCGGCAATTTACGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGCCACCAGGCCCACAAAGG‑CCCGCGCAGGCTTCAGGCCCGGAACAGGCCCCGGCTGGCGCG > 4:240337/1‑147 TTGTGT‑CGCGAAAGGGCCGCATAG‑CGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGG‑ACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCA < 2:258655/147‑1 AAGGGCCGCATAG‑CGGCCCCGGCAATTTCCGCTTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGG‑ACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCC < 5:159630/147‑1 CGCATAG‑CGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGG‑ACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCA > 6:9456/1‑147 CGCATAG‑CGGCCCCGGCAATTTCCGCGGGTATGCAACAACCCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGG‑ACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCA < 3:225390/147‑1 GCATAG‑CGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGG‑ACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCAT > 3:194412/1‑147 GCATAG‑CGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTAAGCAGCCCTTTCGCGACACAAGGCCCACAAAGG‑ACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCAT < 1:221566/147‑1 cG‑CGGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGG‑ACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAG < 3:240337/146‑1 GGCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGG‑ACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGCAC < 1:39260/147‑1 GCCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGG‑ACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGCACC > 2:73306/1‑147 CCCCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGG‑ACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGCACCT < 8:24860/147‑1 ||| GCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGT‑CGCGAAAGGGCCGCATAG‑CG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5555473‑5555608‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGG‑ACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGCACCT > NC_002947/5555609‑5555753 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |