Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_002947	3778635	3779485	851	2 [0]	[1] 2	[PP_3340]–nikR	[PP_3340],nikR

CCCAGCGGCGAGTCGGACAACGTCGGCGAAACACGCCGCTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTGGCAGTACTCCAAGATCCT  >  NC_002947/3778510‑3778634                                                                                                                             | cccAGCGGCGAGTCGGACAACGTCGGCGAAACACGCCGCTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTGGCAGTACTCCAAGATCCt  <  1:84156/125‑1 (MQ=255) cccAGCGGCGAGTCGGACAACGTCGGCGAAACACGCCGCTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTGGCAGTACTCCAAGATCCt  >  2:84156/1‑125 (MQ=255)                                                                                                                             | CCCAGCGGCGAGTCGGACAACGTCGGCGAAACACGCCGCTGGGGCTATGACCTGCAGGTCAACCTGCACCCGGACGAACGAACCGAGGTGTGGATGTCCTACTCCTGGCAGTACTCCAAGATCCT  >  NC_002947/3778510‑3778634

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑