Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_002947	3578813	3578839	27	3 [1]	[1] 2	PP_5589	rhs repeat‑associated core domain‑containing protein

CATCCAGTAATGTTCCCGTCAAGAAACCAGAGCAGCAAAAGATCACGTTCAAACTGGAGGATCGTGCATTAAACAACAAATATTTAATAATGAGGGATAAAAAGATACCGCCGCAGGATATAATTCAGTCCAGCCCTGAGTTAAGGCCTTTTGTAGAACGTAATT  >  NC_002947/3578822‑3578986                   |                                                                                                                                                   cATCCAGTAATGTTCCCGTCAAGAAACCAGAGCAGCAAAAGATCACGTTCAAACTGGAGGATCGTGCATTAAACAACAAATATTTAATAATGAGGGATAAAAAGATACCGCCGCAGGATATAATTCAGTCCAGCCCTGAGTTAAGGc                    >  2:90014/1‑147 (MQ=255)                   tCAAGAAACCAGAGCAGCAAAAGATCACGTTCAAACTGGAGGATCGTGCATTAAACAACAAATATTTAATAATGAGGGATAAAAAGATACCGCCGCAGGATATAATTCAGTCCAGCCCTGAGTTAAGGCCTTTTGTAGAACGTAAtt  >  2:164787/1‑147 (MQ=255)                   |                                                                                                                                                   CATCCAGTAATGTTCCCGTCAAGAAACCAGAGCAGCAAAAGATCACGTTCAAACTGGAGGATCGTGCATTAAACAACAAATATTTAATAATGAGGGATAAAAAGATACCGCCGCAGGATATAATTCAGTCCAGCCCTGAGTTAAGGCCTTTTGTAGAACGTAATT  >  NC_002947/3578822‑3578986

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑