Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_002947196,3270AC26.2% 186.6 / 86.9 129T611T (ACA→ACC) PP_0168putative surface adhesion protein
Reads supporting (aligned to +/- strand):  ref base A (56/37);  new base C (18/15);  total (74/55)
Fisher's exact test for biased strand distribution p-value = 6.81e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 131 total aligned reads displayed.

CCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTA  >  NC_002947/196182‑196466
                                                                                                                                                 |                                                                                                                                            
ccccGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACA‑CACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACa                                                                                                                                              <  4:87553/145‑1 (MQ=255)
  ccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACGTACACCGTGACCCTGAGCAATCCTGCCAAGACGCCGGTGACAGTg                                                                                                                                           >  2:63789/1‑147 (MQ=255)
    gAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACGTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACAGTGAc                                                                                                                                         >  6:17329/1‑147 (MQ=17)
        ccGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTg                                                                                                                                     <  5:135263/147‑1 (MQ=39)
         cGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTTATCACATACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGt                                                                                                                                    >  5:67548/1‑147 (MQ=255)
          gACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGt                                                                                                                                    >  6:26926/1‑146 (MQ=39)
           aCGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCAGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCCGCCGCCGGTGACAGTGACCCTGTc                                                                                                                                   >  7:41285/1‑146 (MQ=255)
              ccGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAAc                                                                                                                               <  1:154687/147‑1 (MQ=39)
              ccGGCTCAGACCACGATCAACGACTCGGGCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCTGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAAc                                                                                                                               <  7:191618/147‑1 (MQ=255)
                ggCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGCTCACTTACACCGTGACCCTGAGCAAACCTGCCCAGCCGCCGGTAACACTGACCCTGTCCAACgg                                                                                                                             >  3:200441/1‑147 (MQ=11)
                ggCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACgg                                                                                                                             >  3:242072/1‑147 (MQ=39)
                  cTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCATCGGcc                                                                                                                           <  4:34204/147‑1 (MQ=255)
                      gACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCaa                                                                                                                         <  6:97824/145‑1 (MQ=39)
                        ccACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCa                                                                                                                     >  8:167523/1‑147 (MQ=39)
                          aCGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCAtt                                                                                                                   <  2:77063/147‑1 (MQ=39)
                          aCGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCAtt                                                                                                                   >  2:16855/1‑147 (MQ=39)
                            gATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCAATAc                                                                                                                 >  6:84152/1‑147 (MQ=255)
                             aTCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTAcc                                                                                                                >  6:94268/1‑147 (MQ=39)
                               cAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACATACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGt                                                                                                              >  8:21320/1‑147 (MQ=17)
                                   gACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTCATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGaa                                                                                                          >  1:138269/1‑147 (MQ=255)
                                    aCTCGGTCGACACCACTACCGCGACCCTGACGTCGAGCCCGTCGGTCACCGAAGGCGTCTTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAg                                                                                                         <  3:214339/147‑1 (MQ=255)
                                    aCTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAg                                                                                                         <  1:19191/147‑1 (MQ=39)
                                    aCTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAg                                                                                                         >  2:34961/1‑147 (MQ=39)
                                      tCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGcc                                                                                                       >  1:249047/1‑147 (MQ=39)
                                      tCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACGTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGcc                                                                                                       >  2:130869/1‑147 (MQ=37)
                                       cGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCACACCATTACGGTTGACGCCg                                                                                                      >  4:128072/1‑147 (MQ=255)
                                         gTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCgg                                                                                                     >  6:53545/1‑146 (MQ=39)
                                          tCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCa                                                                                                   <  3:118316/147‑1 (MQ=39)
                                             acacCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCaaaa                                                                                                >  2:46328/1‑147 (MQ=38)
                                                ccacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGAc                                                                                               >  6:265403/1‑145 (MQ=17)
                                                ccacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGCTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAAc                                                                                               >  1:36461/1‑145 (MQ=37)
                                                  accaCCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGAc                                                                                                                                         <  5:106742/98‑1 (MQ=1)
                                                  acTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAg                                                                                           >  4:118712/1‑147 (MQ=37)
                                                  acTACCCCGACACTTACGGCGAGACGGTCGGTAAACGAATGCGGCGTGATCACTTACACCGTCACCCTCAGCAATCCAGCCCATACGCACGTGACAGTGACCCTGTCAAACGGCCAAACCATTACCGGTGAAGCCTGCAAAAccaac                                                                                           >  2:118217/1‑144 (MQ=11)
                                                  acTAACGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTCATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTCACAGTGACCCTGTCAAACGGCCAAAACATAACGGTTGAAGCCGGCAAAACCCAg                                                                                           >  5:120862/1‑147 (MQ=11)
                                                   cTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAgg                                                                                          >  2:148445/1‑147 (MQ=14)
                                                   cTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAgg                                                                                          <  1:16855/147‑1 (MQ=14)
                                                    tACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGCCGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAgg                                                                                          >  5:193940/1‑146 (MQ=11)
                                                    tACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAggg                                                                                         <  5:26926/147‑1 (MQ=35)
                                                       cgcgACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCACCGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAg                                                                                      >  7:247977/1‑147 (MQ=21)
                                                       cgcgACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAg                                                                                      >  3:242431/1‑147 (MQ=34)
                                                       cgcgACCCTGACGGCGAGCCAGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAg                                                                                      >  1:229667/1‑147 (MQ=255)
                                                        gcgACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAg                                                                                      >  4:150166/1‑146 (MQ=12)
                                                         cgACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCCTCCGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGATGACTCCGGCAACCCCCAGGGCAGct                                                                                    >  4:179237/1‑146 (MQ=11)
                                                            cccTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCg                                                                                 >  4:189186/1‑147 (MQ=12)
                                                                 aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCgg                                                                                                     <  3:44771/122‑1 (MQ=32)
                                                                  cGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGAttt                                                                             <  4:239784/145‑1 (MQ=34)
                                                                         cccGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGCCCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑cccc                                                                   >  1:73112/1‑147 (MQ=21)
                                                                           cGTCGGTCACCGAAGGCGGCGTGATCACTTACAGCGTGACCCTGAGCAACCGTGCCGAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGAGTCGACTTCCAGA‑CCCCgg                                                                 <  4:206412/147‑1 (MQ=11)
                                                                           cGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACTGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCgg                                                                 <  8:247977/147‑1 (MQ=21)
                                                                           cGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGA‑CCCCgg                                                                 <  3:150166/147‑1 (MQ=255)
                                                                            gTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCaaa                                                                                                                        <  3:245027/92‑1 (MQ=33)
                                                                             tCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGc                                                                >  7:43738/1‑146 (MQ=34)
                                                                               ggTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACTGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGTAACACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGaa                                                             <  7:243235/147‑1 (MQ=255)
                                                                                 tCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGA‑CCCCGGCGaa                                                             <  6:204408/145‑1 (MQ=255)
                                                                                 tCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGA‑CCCCGGCGaa                                                             >  5:204408/1‑145 (MQ=255)
                                                                                 tCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGA‑CCCCGGCGAATg                                                           >  2:196863/1‑147 (MQ=255)
                                                                                  cACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGA‑CCCCGGCGAATGa                                                          <  3:189186/147‑1 (MQ=255)
                                                                                    ccGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACg                                                        >  5:266198/1‑147 (MQ=255)
                                                                                    ccGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACg                                                        >  5:262617/1‑147 (MQ=255)
                                                                                      gAAGGCGGCGTGATCACTTACACCGTGAGCCTGATCAACCCTGCCCAGAGGGCGGTGACGGTGACCCTGTCCATCGGCCAAACGTTTTCGGTTGATGGCGGCAAAACCAAGGGCAGCGTCGACTTCCAGA‑GGCGGGCGTATGACGTc                                                      <  8:50892/147‑1 (MQ=2)
                                                                                      gAAGGCGGCGTAATCACATACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTTACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGActt                                                                             <  7:91478/125‑1 (MQ=11)
                                                                                       aaGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGTCt                                                     <  7:154044/147‑1 (MQ=34)
                                                                                         ggcggcGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGA‑CCCCGGCGAATGACGTCTac                                                   <  7:2994/147‑1 (MQ=255)
                                                                                             gcgTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGTCTacaaca                                               <  3:118712/147‑1 (MQ=34)
                                                                                             gcgTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGTCTacaaca                                               <  3:114322/147‑1 (MQ=34)
                                                                                              cgTGATCACTTACACCGTGACCCTGAGCAAACCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGAGTTCCAGA‑CCCCGGCGAATGACGTCTAcaacaa                                              >  2:102395/1‑147 (MQ=255)
                                                                                                 gATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACgg                                           >  3:53557/1‑147 (MQ=34)
                                                                                                   tCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCCGTGACCGTGACCCTGTCCAACCGCCAAACGAATACCGTTGAACCCGGCAAAACCCAGCCCAGCGTCGACATCCAGA‑CCCCGGCGAAAGACGTCTACAACAACggat                                         >  4:240536/1‑145 (MQ=11)
                                                                                                    cACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAACACCCAGGGCAGCGTCGACTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTc                                        <  2:132672/147‑1 (MQ=17)
                                                                                                      cTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGCCGAATGACGACTACAACACCGGTGCGa                                      >  3:45960/1‑147 (MQ=255)
                                                                                                      cTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCCTCGATTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCg                                       <  1:190112/146‑1 (MQ=18)
                                                                                                      cTTACACCGTGACCCTGAGCAATCATGCCCAGACGCCGTTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCTGCAAAACCCAGGGCAGCTTCGATTTCCAGA‑CCCCGTCGAATGACGTCTACAACAACGGTTCg                                       <  1:118217/146‑1 (MQ=11)
                                                                                                       ttACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGAc                                     >  6:232058/1‑147 (MQ=32)
                                                                                                       ttACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGAc                                     <  4:25210/147‑1 (MQ=255)
                                                                                                       ttACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGAc                                     <  4:233648/147‑1 (MQ=255)
                                                                                                        tACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACt                                    >  4:132560/1‑147 (MQ=255)
                                                                                                         acacCGTGACCCTTAGCAATCCTGCCCAGACGCCGGTTACTGTTCCCCTTTCCAACGGCCAAACCATTACCGTTTAAGCCGGAAAAACCCAGGGCAGCGGCGATTTCCAGA‑CCCTGGCGAATGACGTCTACAACAACGGTTCGACTg                                   <  1:33459/147‑1 (MQ=11)
                                                                                                           acCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTc                                 <  7:186008/147‑1 (MQ=255)
                                                                                                            ccGTGACCCTGAGCAATCCTGCCCAGACGCCGGAGACACTGACCCTGTCAAACGGCCAAACCAATACCGAAGAAGCCGGCAAAACCCAGCTCAGCGTCGATTTCCACA‑CCCCGGCGAATGACGTCAACAACAACGGTTCGACTg                                   >  2:192389/1‑144 (MQ=11)
                                                                                                             cgttccccTGAGCAATCCTGCCCAGACGCCGGGGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAg                               <  3:179237/142‑1 (MQ=19)
                                                                                                             cGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAg                               >  1:116663/1‑147 (MQ=34)
                                                                                                             cGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAg                               <  5:53545/147‑1 (MQ=34)
                                                                                                             cGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAg                               <  4:53557/147‑1 (MQ=34)
                                                                                                             cGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAg                               <  4:242431/147‑1 (MQ=34)
                                                                                                              gTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAgt                              >  3:267279/1‑147 (MQ=35)
                                                                                                              gTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGAATTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAga                              >  2:196626/1‑146 (MQ=21)
                                                                                                              gTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAgc                              >  5:26370/1‑146 (MQ=255)
                                                                                                                 aCCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAACCCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTc                           >  8:174602/1‑147 (MQ=37)
                                                                                                                   ccTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCTAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCa                          >  2:236011/1‑146 (MQ=37)
                                                                                                                    cTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACCGCCAAACCATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCgg                                                                 >  8:85372/1‑106 (MQ=255)
                                                                                                                      gAGCAATCCTGCCCAGAGGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCCTGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCa                       <  1:192389/147‑1 (MQ=255)
                                                                                                                        gCAATCCTGCCCAGACGCCGGTTACAGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGGCGATTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCAt                      <  2:30605/145‑1 (MQ=255)
                                                                                                                             ccTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTCGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAAc               >  2:91226/1‑147 (MQ=37)
                                                                                                                                  ccAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGcc            <  5:95378/145‑1 (MQ=37)
                                                                                                                                    aGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGGCACCATCGAGAACGCCACcg        <  5:84152/147‑1 (MQ=38)
                                                                                                                                       cGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACcggcg     >  3:221710/1‑147 (MQ=39)
                                                                                                                                          cGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTa  >  1:100658/1‑147 (MQ=39)
                                                                                                                                           ggTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGt                                                       >  5:200696/1‑93 (MQ=33)
                                                                                                                                           ggTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGt                                                       <  6:200696/93‑1 (MQ=33)
                                                                                                                                                 |                                                                                                                                            
CCCCGAACCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTA  >  NC_002947/196182‑196466

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑