Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_002947196,3900TC25.3% 156.1 / 59.7 98D632D (GAT→GAC) PP_0168putative surface adhesion protein
Reads supporting (aligned to +/- strand):  ref base T (32/39);  new base C (9/15);  total (44/54)
Fisher's exact test for biased strand distribution p-value = 6.35e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.67e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 102 total aligned reads displayed.

GACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGATG  >  NC_002947/196246‑196529
                                                                                                                                                |                                                                                                                                            
gACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGActt                                                                                                                                            >  5:11128/1‑147 (MQ=255)
  cGGCGAGCCCGTCGGTCACCGATGGCGGCGTGATCACTTAGACCGTGACCGTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCTAAGGGCCAAACCATTACCGTTGAAGCCGGCAAATGCCAGGGCAGCGTCGAttt                                                                                                                                            <  6:13301/145‑1 (MQ=11)
  cGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGAttt                                                                                                                                            <  4:239784/145‑1 (MQ=34)
         cccGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGCCCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑cccc                                                                                                                                  >  1:73112/1‑147 (MQ=21)
           cGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACTGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCgg                                                                                                                                <  8:247977/147‑1 (MQ=21)
           cGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGA‑CCCCgg                                                                                                                                <  3:150166/147‑1 (MQ=255)
             tCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGc                                                                                                                               >  7:43738/1‑146 (MQ=34)
               ggTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACTGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGTAACACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGaa                                                                                                                            <  7:243235/147‑1 (MQ=255)
               ggTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGA‑CCCCGGCGaa                                                                                                                            >  8:228446/1‑147 (MQ=255)
                gTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAAt                                                                                                                           <  1:46328/147‑1 (MQ=34)
                 tCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGA‑CCCCGGCGaa                                                                                                                            <  6:204408/145‑1 (MQ=255)
                 tCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGA‑CCCCGGCGaa                                                                                                                            >  5:204408/1‑145 (MQ=255)
                 tCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGA‑CCCCGGCGAATg                                                                                                                          >  2:196863/1‑147 (MQ=255)
                 tCACCGAAGGCGCCGTGAGCACTTACACCGTGACCCTGAGCAACACTGCCCAGACGCCGGGGACAGTGACCCTCTCCCTCGGCGACAGGATTACCGTGGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGA‑CCCCGGCGAATg                                                                                                                          <  3:129090/147‑1 (MQ=11)
                  cACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGA‑CCCCGGCGAATGa                                                                                                                         <  3:189186/147‑1 (MQ=255)
                    ccGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACg                                                                                                                       >  5:266198/1‑147 (MQ=255)
                    ccGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACg                                                                                                                       >  5:262617/1‑147 (MQ=255)
                    ccGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGA‑CCCCGGCGAATGACg                                                                                                                       <  2:229667/147‑1 (MQ=255)
                     cGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGt                                                                                                                      >  1:245819/1‑147 (MQ=34)
                      gAAGGCGGCGTGATCACTTACACCGTGAGCCTGATCAACCCTGCCCAGAGGGCGGTGACGGTGACCCTGTCCATCGGCCAAACGTTTTCGGTTGATGGCGGCAAAACCAAGGGCAGCGTCGACTTCCAGA‑GGCGGGCGTATGACGTc                                                                                                                     <  8:50892/147‑1 (MQ=2)
                      gAAGGCGGCGTAATCACATACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTTACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGActt                                                                                                                                            <  7:91478/125‑1 (MQ=11)
                       aaGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGTCt                                                                                                                    <  7:154044/147‑1 (MQ=34)
                        aGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGA‑CCCCGGCGAATGACGTCt                                                                                                                    >  3:25210/1‑146 (MQ=255)
                         ggcggcGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGA‑CCCCGGCGAATGACGTCTac                                                                                                                  <  7:2994/147‑1 (MQ=255)
                             gcgTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGTCTacaaca                                                                                                              <  3:118712/147‑1 (MQ=34)
                             gcgTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGTCTacaaca                                                                                                              <  3:114322/147‑1 (MQ=34)
                             gcgTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGTCTacaaca                                                                                                              <  4:135415/147‑1 (MQ=34)
                              cgTGATCACTTACACCGTGACCCTGAGCAAACCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGAGTTCCAGA‑CCCCGGCGAATGACGTCTAcaacaa                                                                                                             >  2:102395/1‑147 (MQ=255)
                                 gATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACgg                                                                                                          >  3:53557/1‑147 (MQ=34)
                                   tCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCCGTGACCGTGACCCTGTCCAACCGCCAAACGAATACCGTTGAACCCGGCAAAACCCAGCCCAGCGTCGACATCCAGA‑CCCCGGCGAAAGACGTCTACAACAACggat                                                                                                        >  4:240536/1‑145 (MQ=11)
                                    cACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAACACCCAGGGCAGCGTCGACTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTc                                                                                                       <  2:132672/147‑1 (MQ=17)
                                     aCTTACACCGTGACCATGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCAAAAGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGAATTCCAGA‑CACCGGCGAATGACGTATACAACACAGGTTCg                                                                                                      >  4:239898/1‑147 (MQ=11)
                                      cTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGCCGAATGACGACTACAACACCGGTGCGa                                                                                                     >  3:45960/1‑147 (MQ=255)
                                      cTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCCTCGATTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCg                                                                                                      <  1:190112/146‑1 (MQ=18)
                                      cTTACACCGTGACCCTGAGCAATCATGCCCAGACGCCGTTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCTGCAAAACCCAGGGCAGCTTCGATTTCCAGA‑CCCCGTCGAATGACGTCTACAACAACGGTTCg                                                                                                      <  1:118217/146‑1 (MQ=11)
                                       ttACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGAc                                                                                                    >  6:232058/1‑147 (MQ=32)
                                       ttACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGAc                                                                                                    <  4:25210/147‑1 (MQ=255)
                                       ttACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGAc                                                                                                    <  4:233648/147‑1 (MQ=255)
                                       ttACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACACTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGA‑CACCGGCGAATGACTTCTACAACAACGGTTCGAc                                                                                                    >  2:131587/1‑147 (MQ=11)
                                        tACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACt                                                                                                   <  5:262726/147‑1 (MQ=255)
                                        tACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACt                                                                                                   >  4:132560/1‑147 (MQ=255)
                                         acacCGTGACCCTTAGCAATCCTGCCCAGACGCCGGTTACTGTTCCCCTTTCCAACGGCCAAACCATTACCGTTTAAGCCGGAAAAACCCAGGGCAGCGGCGATTTCCAGA‑CCCTGGCGAATGACGTCTACAACAACGGTTCGACTg                                                                                                  <  1:33459/147‑1 (MQ=11)
                                           acCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTc                                                                                                <  6:45309/147‑1 (MQ=34)
                                           acCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTc                                                                                                <  7:186008/147‑1 (MQ=255)
                                            ccGTGACCCTGAGCAATCCTGCCCAGACGCCGGAGACACTGACCCTGTCAAACGGCCAAACCAATACCGAAGAAGCCGGCAAAACCCAGCTCAGCGTCGATTTCCACA‑CCCCGGCGAATGACGTCAACAACAACGGTTCGACTg                                                                                                  >  2:192389/1‑144 (MQ=11)
                                             cgttccccTGAGCAATCCTGCCCAGACGCCGGGGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAg                                                                                              <  3:179237/142‑1 (MQ=19)
                                             cGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAg                                                                                              <  5:53545/147‑1 (MQ=34)
                                             cGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAg                                                                                              <  4:242431/147‑1 (MQ=34)
                                             cGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAg                                                                                              >  1:116663/1‑147 (MQ=34)
                                             cGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAg                                                                                              <  4:53557/147‑1 (MQ=34)
                                              gTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAgt                                                                                             >  3:267279/1‑147 (MQ=35)
                                              gTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGAATTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAga                                                                                             >  2:196626/1‑146 (MQ=21)
                                              gTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAgc                                                                                             >  5:26370/1‑146 (MQ=255)
                                                 aCCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAACCCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTc                                                                                          >  8:174602/1‑147 (MQ=37)
                                                   ccTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCTAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCa                                                                                         >  2:236011/1‑146 (MQ=37)
                                                   ccTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCa                                                                                         >  6:95378/1‑146 (MQ=37)
                                                    cTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACCGCCAAACCATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCgg                                                                                                                                >  8:85372/1‑106 (MQ=255)
                                                    cTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGA‑CCCCGGCGaa                                                                                                                            <  3:192461/110‑1 (MQ=11)
                                                    cTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCCTCGACTTCCAGA‑CCCCGGCGaa                                                                                                                            >  4:192461/1‑110 (MQ=11)
                                                      gAGCAATCCTGCCCAGAGGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCCTGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCa                                                                                      <  1:192389/147‑1 (MQ=255)
                                                        gCAATCCTGCCCAGACGCCGGTTACAGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGGCGATTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCAt                                                                                     <  2:30605/145‑1 (MQ=255)
                                                             ccTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAAc                                                                              >  1:139846/1‑147 (MQ=37)
                                                             ccTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTCGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAAc                                                                              >  2:91226/1‑147 (MQ=37)
                                                                  ccAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGcc                                                                           <  5:95378/145‑1 (MQ=37)
                                                                    aGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGGCACCATCGAGAACGCCACcg                                                                       <  5:84152/147‑1 (MQ=38)
                                                                       cGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACcggcg                                                                    >  3:221710/1‑147 (MQ=39)
                                                                          cGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTa                                                                 >  1:100658/1‑147 (MQ=39)
                                                                           ggTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGt                                                                                                                      >  5:200696/1‑93 (MQ=33)
                                                                           ggTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGt                                                                                                                      <  6:200696/93‑1 (MQ=33)
                                                                                  gTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAAttt                                                             >  8:3638/1‑143 (MQ=37)
                                                                                  gTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAAttt                                                             <  7:3638/143‑1 (MQ=37)
                                                                                            ccAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGAccc                                               <  4:267279/147‑1 (MQ=37)
                                                                                              aaCGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGAcccc                                              >  4:231519/1‑146 (MQ=37)
                                                                                              aaCGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGAcccc                                              >  3:94061/1‑146 (MQ=37)
                                                                                               aCGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACcggc                                                                     >  6:89909/1‑122 (MQ=38)
                                                                                               aCGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACcggc                                                                     <  5:89909/122‑1 (MQ=38)
                                                                                                    cAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCg                                       >  3:117924/1‑147 (MQ=39)
                                                                                                       aCCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACg                                    <  2:100658/147‑1 (MQ=39)
                                                                                                        ccATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTGGATTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACAGGCGGGAATTTCGAGCAGCTGACCCCGAAGCCGACGc                                   >  6:225999/1‑147 (MQ=11)
                                                                                                        ccATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACTCTCAGAGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGCCCCCGAATCCGACGc                                   >  2:92077/1‑147 (MQ=255)
                                                                                                           ttACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCgg                                <  2:73112/147‑1 (MQ=39)
                                                                                                            tACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGc                               <  1:253761/147‑1 (MQ=255)
                                                                                                               cGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGc                               >  3:2836/1‑144 (MQ=39)
                                                                                                                gTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAg                           <  4:117924/147‑1 (MQ=39)
                                                                                                                gTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAg                           <  1:236011/147‑1 (MQ=39)
                                                                                                                 ttGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGa                          <  5:232058/147‑1 (MQ=39)
                                                                                                                        cGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGa                    >  8:137029/1‑146 (MQ=39)
                                                                                                                           cAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACg                                    <  8:154991/127‑1 (MQ=39)
                                                                                                                           cAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACg                                    >  7:154991/1‑127 (MQ=39)
                                                                                                                           cAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCaa                <  2:139846/147‑1 (MQ=39)
                                                                                                                           cAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCaa                <  8:43738/147‑1 (MQ=39)
                                                                                                                               aCCCAGGGCAGCGTCGATTTCCAGT‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGCCCCCGAATCCGACGCCGGCTCAGACCACGATCAACGAc            <  2:249047/147‑1 (MQ=255)
                                                                                                                               aCCCAGCGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCAACGAc            <  8:40684/147‑1 (MQ=255)
                                                                                                                                cccAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCAACGACt           >  5:96920/1‑147 (MQ=39)
                                                                                                                                 ccAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTc          <  8:15196/147‑1 (MQ=21)
                                                                                                                                 ccAGGGCAGCGTCGATTTCCAGA‑CCCCCGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGCCCCCGAATCCGACGCCGGCTCAGCCCACGATCAACGACTc          >  1:166850/1‑147 (MQ=255)
                                                                                                                                   aGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCgg        <  7:174602/147‑1 (MQ=39)
                                                                                                                                       cAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGGTCGACTGTCAGAGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGa    <  2:217165/147‑1 (MQ=255)
                                                                                                                                         gCGTCGATTTCCAGA‑CCCCGTCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGATg  <  3:239898/147‑1 (MQ=255)
                                                                                                                                              gATTTCCAGA‑CCCCGGCCAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGAc                                                 <  2:40765/95‑1 (MQ=18)
                                                                                                                                                |                                                                                                                                            
GACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGA‑CCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGATG  >  NC_002947/196246‑196529

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑