| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,497,741 | 1 | . | G | 37.5% | ‑0.6 / 10.1 | 8 | intergenic (‑145/+561) | PP_5562/PP_5563 | hypothetical protein/membrane protein |
| Reads supporting (aligned to +/- strand): ref base . (4/1); new base G (1/2); total (5/3) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.64e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CCTGAAACGCCGGTGGCGTGGACTTGAAAAATCGCCTTTCGGCTGCAGCGAATTTGAGTGCTGGCATATGAATATTGTGTTGCCAGCAATGCCGAGTAGGGCACCTCGCTGCGGAAGAAGTTCCGGCGA‑GGGGGGGGATTTTTTCCCCGTTTTGTGACGCTGCGCAATAATGGCGCTGTGATATTGACAGAGTGTCTTGGGCGCAGGAGATGGGGGCTCAAGCCCT > NC_002947/3497613‑3497838 | ccTGAAACGCCGGTGGCGTGGACTTGAAAAATCGCCTTTCGGCTGCAGCGAATTTGAGTGCTGGCATATGAATATTGTGTTGCCAGCAATGCCTAGTAGGGCACCTCGCTGCGGAAGAAGTTCCGGCGAGGGGGGGGGATTTTTTcc > 4:143152/1‑147 (MQ=255) gTGGACTTGAAAAATCGCCTTTCGGCTGCAGCGAATTTGAGTGCTGGCATATGAATATTGTGTTGCCAGCAATGCCGAGTAGGGCACCTCGCTGCGGAAGAAGTTCCGGCGAGGGGGGGGGATTTTTTCCCCGTTTTGTGACGCTgc < 3:143152/147‑1 (MQ=255) aaaaaTCGCCTTTCGGCTGCAGCGAATTTGAGTGCTGGCATATGAATATTGTGTTGCCAGCAATGCCGAGTAGGGCACCTCGCTGCGGAAGAAGTTCCGGCGA‑GGGGGGGGATTTTTTCCCCGTTTTGTGACGCTGCGCAATAATgg > 3:231350/1‑147 (MQ=255) aaaTCGCCTTTCGGCTGCAGCGAATTTGAGTGCTGGCATATGAATATTGTGTTGCCAGCAATGCCGAGTAGGGCACCTCGCTGCGGAAGAAGTTCCGGCGA‑GGGGGGGGATTTTTTCCCCGTTTTGTGACGCTGCGCAATAATGgcg > 5:126292/1‑147 (MQ=255) gCTGCAGCGAATTTGAGTGCTGGCATATGAATATTGTGTTGCCAGCAATGCCGAGTAGGGCACCTCGCTGCGGAAGAAGTTCCGGCGAGGGGGGGGGATTTTTTCCCCGTTTTGTGACGCTGCGCAATAATGGCGCTGTGATATTg < 3:60352/146‑1 (MQ=255) gTGCTGGCATATGAATATTGTGTTGCCAGCAATGCCGAGTAGGGCACCTCGCTGCGGAAGAAGTTCCGGCGA‑GGGGGGGGATTTTTTCCCCGTTTTGTGACGCTGCGCAATAATGGCGCTGTGATATTGACAGAGTGTCTTGGgcg < 6:126292/146‑1 (MQ=255) tGAATATTGTGTTGCCAGCAATGCCGAGTAGGGCACCTCGCTGCGGAAGAAGTTCCGGCGA‑GGGGGGGGATTTTTTCCCCGTTTTGAGACGCTGCGCAAAAATGGCGCTGTGATATTGACAGATTGTCTTGGGCGCAGGAGATgggg > 7:221625/1‑147 (MQ=255) ccAGCAATGCCGAGTAGGGCACCTCGCTGCGGAAGAAGTTCCGGCGA‑GGGGGGGGATTTTTTCCCCGTTTTGTGACGCTGCGCAATAATGGCGCTGTGATATTGACAGAGTGTCTTGGGCGCAGGAGATGGGGGCTCAAGCCCt > 2:124077/1‑144 (MQ=255) | CCTGAAACGCCGGTGGCGTGGACTTGAAAAATCGCCTTTCGGCTGCAGCGAATTTGAGTGCTGGCATATGAATATTGTGTTGCCAGCAATGCCGAGTAGGGCACCTCGCTGCGGAAGAAGTTCCGGCGA‑GGGGGGGGATTTTTTCCCCGTTTTGTGACGCTGCGCAATAATGGCGCTGTGATATTGACAGAGTGTCTTGGGCGCAGGAGATGGGGGCTCAAGCCCT > NC_002947/3497613‑3497838 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |