| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,867,738 | Δ1 bp | 6.8% | intergenic (‑33/+19) | thyA ← / ← lgt | thymidylate synthase/prolipoprotein diacylglyceryl transferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,867,738 | 0 | G | . | 6.8% | 276.2 / 13.2 | 88 | intergenic (‑33/+19) | thyA/lgt | thymidylate synthase/prolipoprotein diacylglyceryl transferase |
| Reads supporting (aligned to +/- strand): ref base G (37/44); new base . (3/3); total (40/48) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.55e-01 | |||||||||||
CAGGTCGAAACGCAGCATCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTA‑CCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAACGCGATGTAACCGAGTTGTG > NC_002947/5867592‑5867884 | cAGGTCGAAACGCAGCATCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTACCCTGTAGCAAAAACGGCAGGGG‑GATCGc < 1:196362/149‑1 (MQ=255)cAGGTCGAAACGCAGCATCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTA‑CCTGTAGCAAAAACGGCAGGGG‑GATCGcc > 3:303574/1‑149 (MQ=255) gAAACGCAGCATCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTTCCGTTATCAATGACGTCGCGCACCAGGTCCAGATACTGTTTCATGGCTTA‑CCTGTAGCAAAAACGGCAGGGGCGATC‑CCCCTGc < 2:165943/148‑1 (MQ=255) gAAACGCAGCATCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTA‑CCTGTAGCAAAAACGGCAGGGGCGATC‑CCCCTGcc < 7:353596/149‑1 (MQ=255) gcagcaTCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTA‑CCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTgg > 8:288640/1‑148 (MQ=255) agcaTCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTA‑CCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGAt > 6:320052/1‑149 (MQ=255) agcaTCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTA‑CCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGAt > 1:305411/1‑149 (MQ=255) agcaTCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGAGACTGATTCATGGCTTA‑CCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGAt > 1:310046/1‑149 (MQ=255) tCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTA‑CCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAAt < 7:208496/149‑1 (MQ=255) cgcgCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTA‑CCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAAt > 2:88156/1‑148 (MQ=255) gcgcCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTA‑CCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAAt > 2:188183/1‑147 (MQ=255) gcgcCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTA‑CCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCa < 7:41691/149‑1 (MQ=255) cccGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGCCGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTA‑CCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGc < 2:137392/149‑1 (MQ=255) ccGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTA‑CCTCTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCg < 1:88156/149‑1 (MQ=255) gggCAGGCTTTTGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGCACCAGGTCAAGATACTGTTTCATGGCTTA‑CCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCgg < 4:5144/148‑1 (MQ=255) cGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTA‑CCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCgg < 2:163064/149‑1 (MQ=255) gCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTA‑CCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGt < 3:169996/149‑1 (MQ=255) gCTGTTGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTA‑CCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCg < 6:73428/149‑1 (MQ=255) gATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTA‑CCTGTAGCAAAAACGGCAGGGG‑GATAGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCg > 3:191626/1‑149 (MQ=255) tGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTA‑CCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTa < 1:188183/149‑1 (MQ=255) tGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTA‑CCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGc > 1:294597/1‑149 (MQ=255) cGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTA‑CCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCtt < 4:303574/149‑1 (MQ=255) gTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTA‑CCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATtat > 4:169668/1‑148 (MQ=255) tGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTA‑CCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATaa < 1:190582/149‑1 (MQ=255) gTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTA‑CCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGccc < 5:320052/149‑1 (MQ=255) ttCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTA‑CCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCccac > 7:208375/1‑149 (MQ=255) ccTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTA‑CCTGTAGCAAAAACATCAAGGC‑GATCGCCCCTGCCGTGGGATAAATAAGCCGGGTTTCGCCGTAGGATTGCTATTATAAGAccac > 4:198/1‑146 (MQ=255) ccTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGATTCATGGCTTA‑CCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCGGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCccac > 3:272897/1‑146 (MQ=255) tGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTA‑CCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGa > 1:300014/1‑148 (MQ=255) cAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTA‑CCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATc < 3:253703/148‑1 (MQ=255) aaCGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTA‑CCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCaa < 3:346391/149‑1 (MQ=255) aaCGTGCCGTTATCAATCACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTA‑CCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCa > 1:172675/1‑148 (MQ=255) ccGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTA‑CCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAg < 8:349389/149‑1 (MQ=255) cGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTA‑CCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAgg > 5:75838/1‑149 (MQ=255) ttATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTA‑CCTGTAGCAAAAACGGCAGGGG‑GAAAGCCCCTGCCGTGGGATTAATAAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCCCAAGATCATCACGAGGc > 8:353752/1‑148 (MQ=255) cAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTA‑CCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATtat > 7:82184/1‑120 (MQ=255) cAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTA‑CCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATtat < 8:82184/120‑1 (MQ=255) aaTGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTA‑CCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGa > 5:180759/1‑149 (MQ=255) aaTGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTA‑CCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGa < 3:198/149‑1 (MQ=255) aaTGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTA‑CCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGa > 6:55258/1‑149 (MQ=255) tGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTA‑CCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACt < 2:300014/149‑1 (MQ=255) gACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTA‑CCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGGGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTa > 2:72373/1‑149 (MQ=255) aCGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTA‑CCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAAt > 3:260933/1‑84 (MQ=255) aCGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTA‑CCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAAt < 4:260933/84‑1 (MQ=255) aCGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTA‑CCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTat < 7:288640/149‑1 (MQ=255) aCGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTA‑CCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTat < 8:208375/149‑1 (MQ=255) aCGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTA‑CCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTa < 3:169668/148‑1 (MQ=255) gTCGCGGACCAGTACCAGATACTGTATCATGGCTTA‑CCTGTAGCAAAAACTGCAGGGG‑GATCTCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCACATCAAGACGAGGCCACCGACTatca < 6:377555/149‑1 (MQ=255) tCGCGGACCAGGTCCAGATACTGTTTCATGGCTTA‑CCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTatcat > 5:151120/1‑149 (MQ=255) tCGCGGACCAGGTCCAGATACTGTTTCATGGCTTA‑CCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTatcat > 6:50436/1‑149 (MQ=255) cgcgGACCAGGTCCAGATACTGTTTCATGGCTTA‑CCTGTAGCAAAAACGGCAGGGG‑GAGCGCCCCTGCCGTGGGATTAATCAGGCGGGGTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTatcatc < 7:249371/149‑1 (MQ=255) gcgGACCAGGTCCAGATACTGTTTCATGGCTTA‑CCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCg < 2:122357/149‑1 (MQ=255) gaggACCAGGTCCAGATAATGTTTGATTGCTTA‑CCTTTAGCAAAAACTGCAGGGG‑GATAGCCCCTGCCGTGGGATTAATCAGGCTGGTTTCGCCGTAGGCTTGCGATTATAAGCACACCAGATCAAGACGAGGCCACCGACTatcatc < 2:109958/146‑1 (MQ=255) ccAGGTCCAGATACTGTTTCATGGCTTA‑CCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATg < 2:305411/149‑1 (MQ=255) ccAGGTCCAGATACTGATTCATGGCTTA‑CCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATg < 2:310046/149‑1 (MQ=255) aGGTCCAGATACTGTTTCATGGCTTA‑CCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGca < 6:213956/149‑1 (MQ=255) aGGTCCAGATAATGTTTCATGGCTTA‑CCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGca < 3:249251/149‑1 (MQ=255) gATACTGTTTCATGGCTTA‑CCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAAc > 1:227199/1‑149 (MQ=255) tACTGTTTCATGGCTTA‑CCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGACCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTg > 5:261475/1‑149 (MQ=255) cTGTTTGATGGCTTA‑CCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGc < 2:172675/149‑1 (MQ=255) tGTTTCATGGCTTA‑CCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGACACCGACTATCATAGGAATGAACAGCAAATCGcc > 5:221958/1‑149 (MQ=255) ttCATGGCTTA‑CCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCtt < 5:55258/148‑1 (MQ=255) tCATGGCTTA‑CCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTtg < 2:221724/148‑1 (MQ=255) gCTTA‑CCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTtgagtga < 7:353752/148‑1 (MQ=255) ttA‑CCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGagcc > 6:104134/1‑149 (MQ=255) a‑CCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGa > 5:44351/1‑108 (MQ=255) a‑CCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGa < 6:44351/108‑1 (MQ=255) cTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGagccagcc < 6:180759/149‑1 (MQ=255) tAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGaa > 7:300265/1‑149 (MQ=255) gCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAAcg > 5:166837/1‑149 (MQ=255) aatactgCAGGGG‑GATCGCCCCTGCCGTGGGATTAATGAGGCGGTTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAACGCGa < 4:191626/143‑1 (MQ=255) aaaaCGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAACGCGa > 4:151564/1‑149 (MQ=255) aaaaCGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAACGCGa > 1:120539/1‑149 (MQ=255) aaaaCGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCACATCAAGACGAGGCAACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGATCCATCCGAAcgcca > 8:171360/1‑147 (MQ=255) ccaCGGCAGGGGCGATC‑CCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGACCGCGAt > 2:106837/3‑149 (MQ=255) aCGGCAGGGGCGATC‑CCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTCGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAACGCGATg > 1:124611/1‑148 (MQ=255) gCATGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGTGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAACGCGATGTAAc < 7:138561/149‑1 (MQ=255) gCAGGGGCGATC‑CCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAACGCGa > 4:351898/1‑143 (MQ=255) gCAGGGGCGATC‑CCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAACGCGa < 3:351898/143‑1 (MQ=255) gCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAACGCGATGTAAc < 6:166837/149‑1 (MQ=255) aGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAACGCGATGTAAcc > 8:82153/1‑148 (MQ=255) gggg‑gATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAACGCGATGTAACCGa < 7:82153/149‑1 (MQ=255) ggg‑gATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAACGCGATGTAAcc < 7:114794/146‑1 (MQ=255) ggg‑gATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAACGCGATGTAAcc > 8:114794/1‑146 (MQ=255) ggg‑gATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAACGCGATGTAACCGAg < 2:294597/149‑1 (MQ=255) g‑gATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCGTTGAGTGAGCCAGCCGAACGCGATGTAACCGAGtt < 5:50436/149‑1 (MQ=255) tgATCGCCCGTGCCGTTGTATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAACGCTATGTAACCGAGtt < 7:131280/148‑1 (MQ=255) tCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAACGCGATGTAACCGAGTtgtg > 5:214340/1‑149 (MQ=255) | CAGGTCGAAACGCAGCATCGCGCCCGGCAGGCTGATGGTGCGGATGCCGGTGCGGTTTCCCTGCAACGTGCCGTTATCAATGACGTCGCGGACCAGGTCCAGATACTGTTTCATGGCTTA‑CCTGTAGCAAAAACGGCAGGGG‑GATCGCCCCTGCCGTGGGATTAATCAGGCGGGTTTCGCCGTAGGCTTGCGATTATAAGCCCACCAGATCAAGACGAGGCCACCGACTATCATCGGAATGCACAGCAACTGGCCTTGAGTGAGCCAGCCGAACGCGATGTAACCGAGTTGTG > NC_002947/5867592‑5867884 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |