New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1227703 =	51 (0.850)	4 (0.070)	4/248	NT	7.6%	coding (883/4320 nt)	PP_1072	leucine‑rich repeat‑containing protein
	?	NC_002947	1227763 =	49 (0.870)					coding (943/4320 nt)	PP_1072	leucine‑rich repeat‑containing protein

GTGATCGGTGCAGAACGGGCGTCGAGTTCCACCCCGGCTGTCGATGCCTGCGCGACCCGCTCGTTCAATACCCGATAGAAATTGATGCGCTCACGCTCGGTAATGAAGCGCGCGAAAAAGCGCCGATAGGCCGGCGTACGGAAGCGCTTACCGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1227857‑1227703 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttaccgag‑‑‑C‑‑GT‑GAGCGCATCAATTTCTATCGGGTATTGAACGAGCGGGTCGCGCAGGCATCGACAGCCGGGGTGGAACTCGACGCCCGTTCTGCACCGATCACTGACGCACCGTTCGTACACCTGCGTCGGCAATGCCTCGCCAAGATCAGGGA  >  NC_002947/1227763‑1227908                                                                                                                                                                                                                                                                                                                     GTGATCGGTGCAGAACGGGCGTCGAGTTCCACCCCGGCTGTCGATGCCTGCGCGACCCGCTCGTTCAATACCCGATAGAAATTGATGCGCTCACGCTCGGTAATGAAGCGCGCGAAAAAGCGCCGATAGGCCGGCGTACGGAAGCGCT                                                                                                                                                                 >  2:212240/1‑148 GTGATCGGTGCAGAACGGGCGTCGAGTTCCACCCCGGCTGTCGATGCCTGCGCGACCCGCTCGTTCAATACCCGATAGAAATTGATGCGCTCACGCTCGGTAATGAAGCGCGCGAAAAAGCGCCGATAGGCCGGCGTACGGAAGCGCT                                                                                                                                                                 >  5:367620/1‑148     TCGGTGCAGAACGGGCGTCGAGTTCCACCCCGGCTGTCGATGCCTGCGCGACCCGCTCGTTCAATACCCGATAGAAATTGATGCGCTCACGCTCGGTAATGAAGCGCGCGAAAAAGCGCCGATAGGCCGGCGTACGGAAGCGCTTACC                                                                                                                                                             >  6:349696/1‑148       GGTGCAGAACGGGCGTCGAGTTCCACCCCGGCTGTCGATGCCTGCGCGACCCGCTCGTTCAATACCCGATAGAAATTGATGCGCTCACGCTCGGTAATGAAGCGCGCGAAAAAGCGCCGATAGGCCGGCGTACGGAAGCGCTTACCGAG                                                                                                                                                          <  1:212240/149‑1                                                                           ATAGAAATTGATGCGCTCACGCTCGGTAATGAAGCGCGCGAAAAAGCGCCGATAGGCCGGCGTACGGAAGCGCTTACCGAGGTACTTGTCGAGTGCATCAATTTCTATCGGGTATTGAACGAGCGGGTCGCGAAGGCATCGACAGCCGG                                                                                      >  2:223501/1‑149                                                                                           TCACGCTCGGTAATGAAGCGCGCGAAAAAGCGACGATAGGCCGGCGTACGGAAGCGCTTACCGAG‑‑‑C‑‑GT‑GAGCGCATCAATTTCTATCGGGTATTGAAAGAGCTGGTCGCGCAGGCATAGACATCCGGGGTGGAACTCGACGACCGTTCT                                                                >  4:209050/1‑149                                                                                               GCTCGGTAATGAAGCGCGCGAAAAAGCGCCGATAGGCCGGCGTACGGAAGCGCTTACCGAG‑‑‑C‑‑GT‑GAGCGCATCAATTTCTATCGGGTATTGAACGAGCGGGTCGCGCAGGCATCGACAGCCGGGGTGGACCTCGACGCCCGTTCTGCAC                                                            >  7:262513/1‑149                                                                                                 TCGGTAATGAAGCGCGCGAAAAAGCGCCGATAGGCCGGCGTACGGAAGCGCTTACCGAG‑‑‑C‑‑GT‑GAGCGCATCAATTTCTATCGGGTATTGAACGAGCGGGTCGCGCAGGCATCGACAGCCGGGGTGGAACTCGACGCCCGTTCTGCACC                                                           >  7:352463/1‑148                                                                                                                                               AGCGCTTACCGAG‑‑‑C‑‑GT‑GAGCGCATCAATTTCTATCGGGTATTGAACGAGCGGGTCGCGCAGGCATCGACAGCCGGGGTGGAACTCGACGCCCGTTCTGCACCGATCACTGACGCACCGTTCGTACACCTGCGTCGGCAATGCCTCGCC             <  8:352463/148‑1                                                                                                                                                    TTACCGAG‑‑‑C‑‑GT‑GAGCGCATCAATTTCTATCGGGTATTGAACGAGCGGGTCGCGCAGGCATCGACAGCCGGGGTGGAACTCGACGCCCGTTCTGCACCGATCACTGACGCACCGTTCGTACACCTGCGTCGGCAATGCCTCGCCAAGAT        >  3:331893/1‑148                                                                                                                                                    TTACCGAG‑‑‑C‑‑GT‑GAGCGCATCAATTTCTATCGGGTATTGAACGAGCGGGTCGCGCAGGCATCGACAGCCGGAGTGGAACTCGACGCCCGTTCTGCACCGATCACTGACGCACCGTTCGTACACCTGCGTCGGCAATGCCTCGCCAAGAT        >  4:62530/1‑148                                                                                                                                                      ACCGAG‑‑‑C‑‑GT‑GAGCGCATCAATTTCTATCGGGTATTGAACGAGCGGGTCGCGCAGGCATCGACAGCCGGAGTGGAACTCGACGCCCGTTCTGCACCGATCACTGACGCACCGTTCGTACACCTGCGTCGGCAATGCCTCGCCAAGATCA      <  3:62530/148‑1                                                                                                                                                       CCGAG‑‑‑C‑‑GT‑GAGCGCATCAATTTCTATCGGGTATTGAACGAGCGGGTCGCGCAGGCATCGACAGCCGGGGTGGAACTCGACGCCCGTTCTGCACCGATCACTGACGCACCGTTCGTACACCTGCGTCGGCAATGCCTCGCCAAGATCAG     <  3:14875/148‑1                                                                                                                                                         GAG‑‑‑C‑‑GT‑GAGCGCATCAATTTCTATCGGGTATTGAACGAGCGGGTCGCGCAGGCATCGACAGCCGGGGTGGAACTCGACGCCCGTTCTGCACCGATCACTGACGCACCGTTCGTACACCTGCGTCGGCAATGCCTCGCCAAGATCAGGGA  <  2:352333/149‑1                                                                                                                                                                                                                                                                                                                     GTGATCGGTGCAGAACGGGCGTCGAGTTCCACCCCGGCTGTCGATGCCTGCGCGACCCGCTCGTTCAATACCCGATAGAAATTGATGCGCTCACGCTCGGTAATGAAGCGCGCGAAAAAGCGCCGATAGGCCGGCGTACGGAAGCGCTTACCGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1227857‑1227703 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttaccgag‑‑‑C‑‑GT‑GAGCGCATCAATTTCTATCGGGTATTGAACGAGCGGGTCGCGCAGGCATCGACAGCCGGGGTGGAACTCGACGCCCGTTCTGCACCGATCACTGACGCACCGTTCGTACACCTGCGTCGGCAATGCCTCGCCAAGATCAGGGA  >  NC_002947/1227763‑1227908

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.