New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1545844 =	73 (1.210)	4 (0.070)	4/254	NT	5.5%	coding (259/1548 nt)	ampG	muropeptide permease AmpG
	?	NC_002947	1545877 =	67 (1.160)					coding (226/1548 nt)	ampG	muropeptide permease AmpG

TCGACCCTGTCGGTATGGTTGCGCGAAGCCGGCGTTGCCCGTGAAACCATCGGTTATGCCAGCCTGATTGGCTTGGCCTACGCCTTCAAGTGGGTCTGGTCACCGCTGCTCGACCAATGGCGCTTGCCGCTGCTTGGCGGCCTCGGGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1545994‑1545844 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccATTGGTCGAGCAGCGGTGACCAGACCCACTTGAAGGCGTAGGCCAAGCCAATCAGGCTGGCATAACCGATGGTTTCACGGGCAACGCCGGCTTCGCGCAACCATACCGACAGGGTCGAGAACACCAGCATGTAGGGTAGGCCGGCG  >  NC_002947/1545877‑1546022                                                                                                                                                                                                                                                                                                           TCGACCCTGTCGGTATGGTTGCGCGAAGCCGGCGTTGCCCGTGAAACCATCGGTTATGCCAGCCTGATTGGCTTGGCCTACGCCTTCAAGTGGGTCTGGTCACCGCTGCTCGACCAATGGCGCTTGCCGCTGCTTGGCGGCCTCGGGCG                                                                                                                                                      >  6:26795/1‑149  CGACCCTGTCGGTATGGTTGCGCGAAGCCGGCGTTGCCCGTGAAACCATCGGTTATGCCAGCCTGATTGGCTTGGCCTACGCCTTCAAGTGGGTCTGGTCACCGCTGCTCGACCAATGGCGCTTGCCGCTGCTTGGCGGCCTCGGGCGC                                                                                                                                                     >  7:172726/1‑149                                                                                                                  CCAATGGCGCTTGCCGCTGCTTGGCGGCCTCGGGCGCCATTGGTCGAGCAGCGGTGACCAGACCCACTTGAAGGCGTAGGCCAAGCCAATCAGGCTGGCATAACCGATGGTTTCACGGGCAACGCCGGCTTCGCGCAACCATA                                           >  3:85630/1‑143                                                                                                                  CCAATGGCGCTTGCCGCTGCTTGGCGGCCTCGGGCGCCATTGGTCGAGCAGCGGTGACCAGACCCACTTGAAGGCGTAGGCCAAGCCAATCAGGCTGGCATAACCGATGGTTTCACGGGCAACGCCGGCTTCGCGCAACCATA                                           <  4:85630/143‑1                                                                                                                     ATGGCGCTTGCCGCTGCTTGGCGGCCTCGGGCGCCATTGGTCGAGCAGCGGTGACCAGACCCACTTGAAGGCGTAGGCCAAGCCAATCAGGCTGGCATAACCGATGGTTTCACGGGCAACGCCGGCTTCGCGCAAC                                               >  3:122696/1‑136                                                                                                                     ATGGCGCTTGCCGCTGCTTGGCGGCCTCGGGCGCCATTGGTCGAGCAGCGGTGACCAGACCCACTTGAAGGCGTAGGCCAAGCCAATCAGGCTGGCATAACCGATGGTTTCACGGGCAACGCCGGCTTCGCGCAAC                                               <  4:122696/136‑1                                                                                                                                                    CGCCATTGGTCGAGCAGCGGTGACCAGACCCACTTGAAGGCGTAGGCCAAGCCAATCAGGCTGGCATAACCGATGGTTTCACGGGCAACGCCGGCTTCGCGCAACCATACCGACAGGGTCGAGAACACCAGCATGTAGGGTAGGCCGGC   >  7:267897/1‑149                                                                                                                                                     GCCATTGGTCGAGCAGCGGTGACCAGACCCACTTGAAGGCGTAGGCCAAGCCAATCAGGCTGGCATAACCGATGGTTTCACGGGCAACGCCGGCTTCGCGCAACCATACCGACAGGGTCGAGAACACCAGCATGTAGGGTAGGCCGGCG  <  3:299906/149‑1                                                                                                                                                                                                                                                                                                           TCGACCCTGTCGGTATGGTTGCGCGAAGCCGGCGTTGCCCGTGAAACCATCGGTTATGCCAGCCTGATTGGCTTGGCCTACGCCTTCAAGTGGGTCTGGTCACCGCTGCTCGACCAATGGCGCTTGCCGCTGCTTGGCGGCCTCGGGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1545994‑1545844 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccATTGGTCGAGCAGCGGTGACCAGACCCACTTGAAGGCGTAGGCCAAGCCAATCAGGCTGGCATAACCGATGGTTTCACGGGCAACGCCGGCTTCGCGCAACCATACCGACAGGGTCGAGAACACCAGCATGTAGGGTAGGCCGGCG  >  NC_002947/1545877‑1546022

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.