New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1559728 =	60 (1.000)	3 (0.050)	3/254	NT	5.3%	coding (320/1122 nt)	PP_1370	group 1 family glycosyl transferase
	?	NC_002947	1559776 =	50 (0.860)					coding (272/1122 nt)	PP_1370	group 1 family glycosyl transferase

CCTGCGCCGCCCTTGCCGTTTGGCAAGGGTTACCGCTTTCCGGTACGCCTGGCCCCCTGGTGCAATACACTGCGCACGCTCAAACCGGACCTGATCGAAGTTGGCGACCCCTACCTGACCGCCTGGGCGGCGCTGGAGGCGCGGCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1559876‑1559728 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccaACTTCGATCAGGTCCGGTTTGAGCGTGCGCAGTGTATTGCACCAGGGGGCCAGGCGTACCGGAAAGCGGTAACCCTTGCCAAACGGCAAGGGCGGCGCAGGTACCTGATAGATGCCATCGCCGTGTTGGGCGCTGGCACCGGGAATC  >  NC_002947/1559776‑1559922                                                                                                                                                                                                                                                                                                          CCTGCGCCGCCCTTGCCGTTTGGCAAGGGTTACCGCTTTCCGGTACGCCTGGCCCCCTGGTGCAATACACTGCGCACGCTCAAACCGGACCTGATCGAAGTTGGCGACCCCTACCTGACCGCCTGGGCGGCGCTGGAGGCGCGGCGCCA                                                                                                                                                     <  4:265591/149‑1                                                                                             GATCGAAGTTGGCGACCCCTACCTGACCGCCTGGGCGGCGCTGGAGGCGCGGCGCCAACTTCGATCAGGTCCGGTTTGAGCGTGCGCAGTGTATTGCACCAGGGGGCCAG                                                                                                <  3:185740/110‑1                                                                                             GATCGAAGTTGGCGACCCCTACCTGACCGCCTGGGCGGCGCTGGAGGCGCGGCGCCAACTTCGATCAGGTCCGGTTTGAGCGTGCGCAGTGTATTGCACCAGGGGGCCAG                                                                                                >  4:185740/1‑110                                                                                                   AGTTGGCGACCCCTACCTGACCGCCTGGGCGGCGCTGGAGGCGCGGCGCCAACTTCGATCAGGTCCGGTTTGAGCGTGCGCAGTGTATTGCACCAGGGGGCCAGGCGTACCGGAAAGCGGTAACCCTTGCCAAACGGCAAGGGCGGCG                                                    >  6:95902/1‑148                                                                                                                                                  GCCAACTTCGATCAGGTCCGGTTTGAGCGTGCGCAGTGTATTGCACCAGGGGGCCAGGCGTACCGGAAAGCGGTAACCCTTGCCAAACGGCAAGGGCGGCGCAGGTACCTGATAGATGCCATCGCCGTGTTGGGCGCTGGCACCGGGAA    >  2:369160/1‑149                                                                                                                                                    CAACTTCGATCAGGTCCGGTTTGAGCGTGCGCAGTGTATTGCACCAGGGGGCCAGGCGTACCGGAAAGCGGTAACCCTTGCCAAACGGCAAGGGCGGCGCAGGTACCTGATAGATGCCATCGCCGTGTTGGGCGCTGGCACCGGGAATC  <  1:339771/149‑1                                                                                                                                                    CAACTTCGATCAGGTCCGGTTTGAGCGTGCGCAGTGTATTGCACCAGGGGGCCAGGCGTACCGGAAAGCGGTAACCCTTGCCAAACGGCAAGGGCGGCGCAGGTACCTGATAGATGCCATCGCCGTGTTGGGCGCTGGCACCGGGAAT   >  3:363437/1‑148                                                                                                                                                    CAACTTCGATCAGGTCCGGTTTGAGCGTGCGCAGTGTATTGCACCAGGGGGCCAGGCGTACCGGAAAGCGGTAACCCTTGCCAAACGGCAAGGGCGGCGCAGGTACCTGATAGATGCCATCGCCGTGTTGGGCGCTGGCACCGGGAAT   >  5:189663/1‑148                                                                                                                                                                                                                                                                                                          CCTGCGCCGCCCTTGCCGTTTGGCAAGGGTTACCGCTTTCCGGTACGCCTGGCCCCCTGGTGCAATACACTGCGCACGCTCAAACCGGACCTGATCGAAGTTGGCGACCCCTACCTGACCGCCTGGGCGGCGCTGGAGGCGCGGCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1559876‑1559728 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccaACTTCGATCAGGTCCGGTTTGAGCGTGCGCAGTGTATTGCACCAGGGGGCCAGGCGTACCGGAAAGCGGTAACCCTTGCCAAACGGCAAGGGCGGCGCAGGTACCTGATAGATGCCATCGCCGTGTTGGGCGCTGGCACCGGGAATC  >  NC_002947/1559776‑1559922

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.