New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1584498	60 (1.000)	6 (0.100)	4/254	NT	8.9%	coding (516/1452 nt)	PP_1388	EmrB/QacA family drug resistance transporter
	?	NC_002947	= 1584545	65 (1.120)					coding (469/1452 nt)	PP_1388	EmrB/QacA family drug resistance transporter

AAGGTGATGCCCAGCAGCAGGCTGCCAAGGCCGAGAATCAACAGCATGGCGCCAAGGTAGTCCACCTGTGCCTCACGACGCTGCACTGGCATGTCAGCGAGCGCACGGCGAATGGCCCACAAAGCAACCAGCCCCAGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1584358‑1584498 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcTGGTTGACCGAGTACCTGTCGTGGCGCTGGGTGTTCTGGATCAACCTGCCGCTGGGGCTGGTTGCTTTGTGGGCCATTCGCCGTGCGCTCGCTGACATGCCAGTGCAGCGTCGTGAGGCACAGGTGGACTACCTTGGCGCCATGCTGT  <  NC_002947/1584545‑1584398                                                                                                                                                                                                                                                                                                   AAGGTGACGCCCAGCAGCAGGCTGCCAAGGCCGAGAATCAACAGCATGGCGCCAAGGTAGTCCACCTGTGCCTCACGACGCTGCACTGGCATGTCAGCGAGCGCACGGCGAATGGCCCACAAAGCAACCTGCCGCTGGGGCTGGTTGct                                                                                                                                              <  3:222469/149‑3            CAGCAGCAGGCTGCCAAGGCCGAGAATCAACAGCATGGCGCCAAGGTAGTCCACCTGTGCCTCACGACGCTGCACTGGCATGTCAGCGAGCGCACGGCGAATGGCCCACAAAGCAACCTGCCGCTGGGGCTGGTTGctt                                                                                                                                             >  3:142/1‑136            CAGCAGCAGGCTGCCAAGGCCGAGAATCAACAGCATGGCGCCAAGGTAGTCCACCTGTGCCTCACGACGCTGCACTGGCATGTCAGCGAGCGCACGGCGAATGGCCCACAAAGCAACCTGCCGCTGGGGCTGGTTGctt                                                                                                                                             <  4:142/139‑4                                         ACAGCATGGCGCCAAGGTAGTCCACCTGTGCCTCACGACGCTGCACTGGCATGTCAGCGAGCGCACGGCGAATGGCCCACAAAGCAACCAGCCCCAGCGGCTGGTTGACCGAGTACCTGTCGTGGCGCTGGGTGTTCTGGATCAACCTG                                                                                                      >  5:327408/1‑149                                            GCATGGCGCCAAGGTAGTCCACCTGTGCCTCACGACGCTGCACTGGCATGTCAGCGAGCGCACGGCGAATGGCCCACAAAGCAACCAGCCCCAGCGGCTGGTTGACCGAGTACCTGTCGTGGCGCTGGGTGTTCTGGATCAACCTGCCG                                                                                                   <  1:136281/149‑1                                                    CCAAGGTAGTCCACCTGTGCCTCACGACGCTGCACTGGCATGTCAGCGAGCGCACGGCGAATGGCCCACAAAGCAACCAGCCCCAGCGGCTGGTTGACCGAGTACCTGTCGTGGCGCTGGGTGTTCTGGATCAACCTGCCGCTGGGGCT                                                                                           <  6:327408/149‑1                                                                                                                                           GGCTGGTTGACCGAGTACCTGTCGTGGCGCTGGGTGTTCTGGATCAACCTGCCGCTGGGGCTGGTTGCTTTGTGGGCCATTCGCCGTGCGCTCGCTGACATGCCAGTGCAGCGTCGTGAGGCACAGGTGGACTACCTTGGCGCCATGCT    >  1:158601/1‑149                                                                                                                                           GGCTGGTTGACCGAGTACCTGTCGTGGCGCTGGGTGTTCTGGATCAACCTGCCGCTGGGGCTGGTTGCTTTGTGGGCCATTCGCCGTGCGCTCGCTGACATGCCAGTGCAGCGTCGTGAGGCACAGGTGGACTACCTTGGCGCCATGCT    >  5:143365/1‑149                                                                                                                                            GCTGGTTGACCGAGTACCTGTCGTGGCGCTGGGTGTTCTGGATCAACCTGCCGCTGGGGCTGGTTGCTTTGTGGGCCATTCGCCGTGCGCTCGCTGACATGCCAGTGCAGCGTCGTGAGGCACAGGTGGACTACCTTGGCGCCATGCTG   >  8:208354/1‑149                                                                                                                                             CTGGTTGACCGAGTACCTGTCGTGGCGCTGGGTGTTCTGGATCAACCTGCCGCTGGGGCTGGTTGCTTTGTGGGCCATTCGCCGTGCGCTCGCTGACATGCCAGTGCAGCGTCGTGAGGCACAGGTGGACTACCTTGGCGCCATGCTGT  <  5:37179/149‑1                                                                                                                                             CTGGTTGACCGAGTACCTGTCGTGGCGCTGGGTGTTCTGGATCAACCTGCCGCTAGGGCTGGTTGCTTTGTGGGCCATTCGCCGTGCGCTCGCTGACATGCCAGTGCAGCGTCGTGAGGCACAGGTGGACTACCTTGGCGCCATGCTGT  <  1:309586/149‑1                                                                                                                                                                                                                                                                                                   AAGGTGATGCCCAGCAGCAGGCTGCCAAGGCCGAGAATCAACAGCATGGCGCCAAGGTAGTCCACCTGTGCCTCACGACGCTGCACTGGCATGTCAGCGAGCGCACGGCGAATGGCCCACAAAGCAACCAGCCCCAGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1584358‑1584498 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcTGGTTGACCGAGTACCTGTCGTGGCGCTGGGTGTTCTGGATCAACCTGCCGCTGGGGCTGGTTGCTTTGTGGGCCATTCGCCGTGCGCTCGCTGACATGCCAGTGCAGCGTCGTGAGGCACAGGTGGACTACCTTGGCGCCATGCTGT  <  NC_002947/1584545‑1584398

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.