| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1699474 | 47 (0.780) | 4 (0.070) | 4/246 | NT | 6.7% | coding (160/1008 nt) | PP_1494 | GGDEF domain‑containing response regulator |
| ? | NC_002947 | = 1699550 | 67 (1.190) | coding (236/1008 nt) | PP_1494 | GGDEF domain‑containing response regulator | |||||
ATTTACCGATCGAAGGTTTCGCGACCACCAACGAAAACTCGGCGATGGTGCTGCTGGTCGACGATCAGGCCATGATCGGCGAAGCGGTGCGGCGTGGCTTGGCCAATGAAGACAACATCGACTTCCACTTCTGTGCCGACCCGCACCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1699325‑1699474‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcaccaggGTCAAGCCGTCCAGCCCAGGCATGATCAGGTCTTGAAGAATGACCGTGGGCTTGATGCGCATGGCCTGGGCCACCGCCTGGTGCGGGTCGGCACAGAAGTGGAAGTCGATGTTGTCTTCATTGGCCAAGCCACGCCGCACCGCTTCGC < NC_002947/1699550‑1699403 ATTTACCGATCGAAGGTTTCGCGACCACCAACGAAAACTCGGCGATGGTGCTGCTGGTCGACGATCAGGCCATGATCGGCGAAGCGGTGCGGCGTGGCTTGGCCAATGAAGACAACATCGACTTCCACTTCTGTGCCGACCCGCACCA < 4:61225/148‑1ATTTACCGATCGAAGGTTTCGCGACCACCAACGAAAACTCGGCGATGGTGCTGCTGGTCGACGATCAGGCCATGATCGGCGAAGCGGTGCGGCGTGGCTTGGCCAATGAAGACAACATCGACTTCCACTTCTGTGCCGACCCGCACCA < 6:291723/148‑1 GGCGATGGTGCTGCTGGTCGACGATCAGGCCATGATCGGCGAAGCGGTGCGGCGTGGCTTGGCCAATGAAGACAACATCGACTTCCACTTCTGTGCCGACCCGCACCAGGGTCAAGCCGTCCAGCCCAGGCATGATCAGGTCTTGAAG > 4:353810/1‑148 AAGCGGTGCGGCGTGGCTTGGCCAATGAAGACAACATCGACTTCCACTTCTGTGCCGACCCGCACCAGGGTCAAGCCGTCCAGCCCAGGCATGATCAGGTCTTGAAGAATGACCGTGGGCTTGATGCGCATGGCCTGGGCCACCGCCTG > 5:303778/1‑149 GGTGCGGCGTGGCTTGGCCAATGAAGACAACATCGACTTCCACTTCTGTGCCGACCCGCACCAGGGTCAAGCCGTCCAGCCCAGGCATGATCAGGTCTTGAAGAATGACCGTGGGCTTGATGCGCATGGCCTGGGCCACCGCCTGGTGC < 3:353810/149‑1 TGCGGCGTGGCTTGGCCAATGAAGACAACATCGACTTCCACTTCTGTGCCGACCCGCACCAGGGTCAAGCCGTCCAGCCCAGGCATGATCAGGTCTTGAAGAATGACCGTGGGCTTGATGCGCATGGCCTGGGCCACCGCCTGGTGCGG < 6:303778/149‑1 CACCAGGGTCAAGCCGTCCAGCCCAGGCATGATCAGGTCTTGAAGAATGACCGTGGGCTTGATGCGCATGGCCTGGGCCACCGCCTGGTGCGGGTCGGCACAGAAGTGGAAGTCGATGTTGTCTTCATTGGCCAAGCCACGCCGCACCG > 5:86625/1‑149 GGTCAAGCCGTCCAGCCCAGGCATGATCAGGTCTTGAAGAATGACCGTGGGCTTGATGCGCATGGCCTGGGCCACCGCCTGGTGCGGGTCGGCACAGAAGTGGAAGTCGATGTTGTCTTCATTGGCCAAGCCACGCCGCACCGCTTCGC > 1:356509/1‑149 ATTTACCGATCGAAGGTTTCGCGACCACCAACGAAAACTCGGCGATGGTGCTGCTGGTCGACGATCAGGCCATGATCGGCGAAGCGGTGCGGCGTGGCTTGGCCAATGAAGACAACATCGACTTCCACTTCTGTGCCGACCCGCACCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1699325‑1699474‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcaccaggGTCAAGCCGTCCAGCCCAGGCATGATCAGGTCTTGAAGAATGACCGTGGGCTTGATGCGCATGGCCTGGGCCACCGCCTGGTGCGGGTCGGCACAGAAGTGGAAGTCGATGTTGTCTTCATTGGCCAAGCCACGCCGCACCGCTTCGC < NC_002947/1699550‑1699403 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |