New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1708953 =	59 (0.980)	6 (0.110)	6/248	NT	10.1%	coding (281/378 nt)	PP_1504	hypothetical protein
	?	NC_002947	1708992 =	51 (0.900)					coding (242/378 nt)	PP_1504	hypothetical protein

CGAAGCGCGCCTGGCCGCGCTGATCGACATGTACCCCAAGCGCACCGCCGAAGAACTGCTCGGCGAACTGGTCGCCGCCGCCCTTGAAGAACTGGAGGCCAGCTTCCCCTATGTACAGGGTCGCCAGGTCATCGCCACCGACGAAGAAGGCGACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1709108‑1708953 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgacccTGTACATAGGGGAAGCTGGCCTCCAGTTCTTCAAGGGCGGCGGCGACCAGTTCGCCGAGCAGTTCTTCGGCGGTGCGCTTGGGGTACATGTCGATCAGCGCGGCCAGGCGCGCTTCGGACTCCAGGTCCAGGTGCAGGACATGACCGG  >  NC_002947/1708992‑1709139                                                                                                                                                                                                                                                                                                                  CGAAGCGCGCCTGGCCGCGCTGATCGACATGTACCCCAAGCGCACCGCCGAAGAACTGCTCGGCGAACTGGTCGCCGCCGCCCTTGAAGAACTGGAGGCCAGCTTCCCCTATGTACAGGGTCGCCAGGTCATCGCCACCGACGAAGAAG                                                                                                                                                             >  2:178485/1‑149   AAGCGCGCCTGGCCGCGCTGATCGACATGTACCCCAAGCGCACCGCCGAAGAACTGCTCGGCGAACTGGTCGCCGCCGCCCTTGAAGAACTGGAGGCCAGCTTCCCCTATGTACAGGGTCGCCAGGTCATCGCCACCGACGAAGAAGGC                                                                                                                                                           <  4:178635/149‑1      CGCGCCTGGCCGCGCTGATCGACATGTACCCCAAGCGCACCGCCGAAGAACTGCTCGGCGAACTGGTCGCCGCCGCCCTTGAAGAACTGGAGGCCAGCTTCCCCTATGTACAGGGTCGCCAGGTCATCGCCACCGACGAAGAAGGCGAC                                                                                                                                                        >  8:107815/1‑149                                 ACCCCAAGCGCACCGCCGAAGAACTGCTCGGCGAACTGGTCGCCGCCGCCCTTGAAGAACTGGAGGCCAGCTTCCCCTATGTACAGGGTCGCCAGGTCATCGCCACCGACGAAGAAGGCGA                                                                                                                                                         >  2:170177/1‑121                                 ACCCCAAGCGCACCGCCGAAGAACTGCTCGGCGAACTGGTCGCCGCCGCCCTTGAAGAACTGGAGGCCAGCTTCCCCTATGTACAGGGTCGCCAGGTCATCGCCACCGACGAAGAAGGCGA                                                                                                                                                         <  1:170177/121‑1                                                                                                            CCTATGTACAGGGTCGCCAGGTCATCGCCACCGACGAAGAAGGCGACCCTGTACATAGGGGAAGCTGGCCTCCAGTTCTTCAAGGGCGGCGGCGACCAGTTCGCCGAGCAGTTCTTCGGCGGTGCGCTTGGGGTACATGTCGATCAGCG                                                  >  5:26993/1‑149                                                                                                                     AGGGTCGCCAGGTCATCGCCACCGACGAAGAAGGCGACCCTGTACATAGGGGAAGCTGGCCTCCAGTTCTTCAAGGGCGGCGGCGACCAGTTCGCC                                                                                              >  5:1415/1‑96                                                                                                                     AGGGTCGCCAGGTCATCGCCACCGACGAAGAAGGCGACCCTGTACATAGGGGAAGCTGGCCTCCAGTTCTTCAAGGGCGGCGGCGACCAGTTCGCC                                                                                              <  6:1415/96‑1                                                                                                                      GGGTCGCCAGGTCATCGCCACCGACGAAGAAGGCGACCCTGTACATAGGGGAAGCTGGCCTCCAGTTCTTCAAGGGCGGCGGCGACCAGTTCGCCGAGCAGTTCTTCGGCGGTGCGCTTGGGGTACATGTCGATCAGCGCGGCCAGGCG                                        >  2:338411/1‑149                                                                                                                         TCGCCAGGTCATCGCCACCGACGAAGAAGGCGACCCTGTACATAGGGGAAGCTGGCCTCCAGTTCTTCAAGGGCGGCGGCGACCAGTTCGCCGAGCAGTTCTTCGGCGGTGCGCTTGGGGTACATGTCGATCAGCGCGGCCAGGCGCGC                                     >  6:59637/1‑149                                                                                                                                   ATCGCCACCGACGAAGAAGGCGACCCTGTACATAGGGGAAGCTGGCCTCCAGTTCTTCAAGGGCGGCGGCGACCAGTTCGCCGAGCAGTTCTTCGGCGGTGCGCTTGGGGTACATGTCGATCAGCGCGGCCAGGCGCGCTTCGGACTCC                           <  6:26993/149‑1                                                                                                                                                   AAGGCGACCCTGTACATAGGGGAAGCTGGCCTCCAGTTCTTCAAGGGCGGCGGCGACCAGTTCGCCGAGCAGTTCTTCGGCGGTGCGCTTGGGGTACATGTCGATCAGCGCGGCCAGGCGCGCTTCGGACTCCAGGTCCAGGTGCAGGA           <  5:59637/149‑1                                                                                                                                                      GCGACCCTGTACATAGGGGAAGGTGGCCTCCAGTTCTTCATGGGCGGCGGCGACCAGTTCGGCGAGCAGTTCTTCGGCGGTGCGCTTGGGGTACATGTCGATCTGCGCGGCCAGGCGCGCTTCGGACTCCAGGTCCAGGTGCAGGACA         <  5:351530/148‑1                                                                                                                                                         ACCCTGTACATAGGGGAAGCTGGCCTCCAGTTCTTCAAGGGCGGCGGCGACCAGTTCGCCGAGCAGTTCTTCGGCGGTGCGCTTGGGGTACATGTCGATCAGCGCGGCCAGGCGCGCTTCGGACTCCAGGTCCAGGTGCAGGACATGAC     <  3:58640/149‑1                                                                                                                                                         ACCCTGTACATAGGGGAAGCTGGCCTCCAGTTCTTCAAGGGCGGCGGCGACCAGTTCGCCGAGCAGTTCTTCGGCGGTGCGCTTGGGGTACATGTCGATCAGCGCGGCCAGGCGCGCTTCGGACTCCAGGTCCAGGTGCAGGACATGAC     <  4:157765/149‑1                                                                                                                                                            CTGTACATAGGGGAAGCTGGCCTCCTGTTCTTCAAGGGCGGCGGCGACCTGTTCGCCGAGCAGTTCTTCGGGGGTGGGCTTGGGGTACATGGCGATCAGCGCGGCCAGGCGCGGTTGGGACTCCAGGTCCAGGTGCAGGACATGACCGG  <  2:289522/149‑1                                                                                                                                                            CTGTACATAGGGGAAGCTGGCCTCCAGTTCTTCAAGGGCGGCGGCGACCAGTTCGCCGAGCAGTTCTTCGGCGGTGCGCTTGGGGTACATGTCGATCAGCGCGGCCAGGCGCGCTTCGGACTCCAGGTCCAGGTGCAGGACATGACCGG  >  3:69831/1‑149                                                                                                                                                            CTGTACATAGGGGAAGCTGGCCTCCAGTTCTTCAAGGGCGGCGGCGACCAGTTCGCCGAGCAGTTCTTCGGCGGTGCGCTTGGGGTACATGTCGATCAGCGCGGCCAGGCGCGCTTCGGACTCCAGGTCCAGGTGCAGGACATGACCGG  >  4:342164/1‑149                                                                                                                                                                                                                                                                                                                  CGAAGCGCGCCTGGCCGCGCTGATCGACATGTACCCCAAGCGCACCGCCGAAGAACTGCTCGGCGAACTGGTCGCCGCCGCCCTTGAAGAACTGGAGGCCAGCTTCCCCTATGTACAGGGTCGCCAGGTCATCGCCACCGACGAAGAAGGCGACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1709108‑1708953 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgacccTGTACATAGGGGAAGCTGGCCTCCAGTTCTTCAAGGGCGGCGGCGACCAGTTCGCCGAGCAGTTCTTCGGCGGTGCGCTTGGGGTACATGTCGATCAGCGCGGCCAGGCGCGCTTCGGACTCCAGGTCCAGGTGCAGGACATGACCGG  >  NC_002947/1708992‑1709139

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.