New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1780478 =	49 (0.810)	5 (0.090)	4/250	NT	9.2%	coding (866/1197 nt)	dapC	N‑succinyl‑L,L‑diaminopimelate aminotransferase
	?	NC_002947	1780513 =	52 (0.910)					coding (831/1197 nt)	dapC	N‑succinyl‑L,L‑diaminopimelate aminotransferase

GTGGTGTTCCACAGCCTGTCCAAGCGCTCCAACCTGCCTGGGCTGCGCTCGGGCTTCGTCGCGGGCGATGCCCAGATCATCAAGCCGTTTCTGCTGTACCGCACCTACCACGGCTGCGCGATGCCGGTGCAAACCCAGCTGGCCAGCATCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1780629‑1780478 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcatcgcGCAGCCGTGGTAGGTGCGGTACAGCAGAAACGGCTTGATGATCTGGGCATCGCCCGCGACGAAGCCCGAGCGCAGCCCAGGCAGGTTGGAGCGCTTGGACAGGCTGTGGAACACCACGCAGCGCGCAAAATCGCTACGACCAA  >  NC_002947/1780513‑1780655                                                                                                                                                                                                                                                                                                         GTGGTGTTCCACAGCCTGTCCAAGCGCTCCAACCTGCCTGGGCTGCGCTCGGGCTTCGTCGCGGGCGATGCCCAGATCATCAAGCCGTTTCTGCTGTACCGCACCTACCACGGCTGCGCGATGCCGGTGCAAACCCAGCTGGCCAGCAT                                                                                                                                                    <  1:842/149‑1                                                                       CCCAGATCATCAAGCCGTTTCTGCTGTACCGCACCTACCACGGCTGCGCGATGCCGGTGCAAACCCAGCTGGCCAGC                                                                                                                                                      >  5:16080/1‑77                                                                       CCCAGATCATCAAGCCGTTTCTGCTGTACCGCACCTACCACGGCTGCGCGATGCCGGTGCAAACCCAGCTGGCCAGC                                                                                                                                                      <  6:16080/77‑1                                                                                                                   TGCGCGATGCCGGTGCAAACCCAGCTGGCCAGCATCGCGCAGCCGTGGTAGGTGCGGTACAGCAGAAACGGCTTGATGATCTGGGCATCGCCCGCGACGCAGCCCGAGCGCAGCCCAGGCAGGGTGGAGCGCTTGGCCAGGCTGGGGAA                                  >  8:171144/1‑149                                                                                                                      GCGATGCCGGTGCAAACCCAGCTGGCCAGCATCGCGCAGCCGTGGTAGGTGCGGTACAGCAGAAACGGCTTGATGATCTGGGCATCGCCCGCGACGAAGCCCGAGCGCAGCCCAGGCAGGTTGGAGCGCTTGGACAGGCTGTGGAA                                  >  1:38492/1‑146                                                                                                                      GCGATGCCGGTGCAAACCCAGCTGGCCAGCATCGCGCAGCCGTGGTAGGTGCGGTACAGCAGAAACGGCTTGATGATCTGGGCATCGCCCGCGACGAAGCCCGAGCGCAGCCCAGGCAGGTTGGAGCGCTTGGACAGGCTGTGGAA                                  <  2:38492/146‑1                                                                                                                      GCGATGCCGGTGCAAACCCAGCTGGCCAGCATCGCGCAGCCGTGGTAGGTGCGGTACAGCAGAAACGGCTTGATGATCTGGGCATCGCCCGCGACGAAGCCCGAGCGCA                                                                       <  5:264833/109‑1                                                                                                                      GCGATGCCGGTGCAAACCCAGCTGGCCAGCATCGCGCAGCCGTGGTAGGTGCGGTACAGCAGAAACGGCTTGATGATCTGGGCATCGCCCGCGACGAAGCCCGAGCGCA                                                                       >  6:264833/1‑109                                                                                                                                                   CATCGCGCAGCCGTGGTAGGTGCGGTACAGCAGAAACGGCTTGATGATCTGGGCATCGCCCGCGACGAAGCCCGGGCGCAGCCCAGGCAGGTTGGAGCGCTTGGACAGGCTGTGGAACACCACGCAGCGCGCAAAATCGCTACGACCAA  <  3:114339/149‑1                                                                                                                                                                                                                                                                                                         GTGGTGTTCCACAGCCTGTCCAAGCGCTCCAACCTGCCTGGGCTGCGCTCGGGCTTCGTCGCGGGCGATGCCCAGATCATCAAGCCGTTTCTGCTGTACCGCACCTACCACGGCTGCGCGATGCCGGTGCAAACCCAGCTGGCCAGCATCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1780629‑1780478 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcatcgcGCAGCCGTGGTAGGTGCGGTACAGCAGAAACGGCTTGATGATCTGGGCATCGCCCGCGACGAAGCCCGAGCGCAGCCCAGGCAGGTTGGAGCGCTTGGACAGGCTGTGGAACACCACGCAGCGCGCAAAATCGCTACGACCAA  >  NC_002947/1780513‑1780655

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.