| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3310418 = | 62 (1.030) | 3 (0.050) | 3/254 | NT | 5.4% | coding (132/1392 nt) | gabP‑III | gamma‑aminobutyrate permease |
| ? | NC_002947 | 3310458 = | 46 (0.790) | coding (172/1392 nt) | gabP‑III | gamma‑aminobutyrate permease | |||||
AGCCAACCGATGGTGTAACCGGCCCATTTGCCGATGGCGAGGTCAGCGTAGGTTGAAAACGAGCCGGTGTCCGGGGAGGCCACAGCCATTTCAGCCAGCATGCGCATCACCAGCACCACCAGGCCGCCCGCCAGGATATAGGCCAGGATGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3310570‑3310418‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggtgCTGGTGATGCGCATGCTGGCTGAAATGGCTGTGGCCTCCCCGGACACCGGCTCGTTTTCAACCTACGCTGACCTCGCCATCGGCAAATGGGCCGGTTACACCATCGGTTG > NC_002947/3310458‑3310567 AGCCAACCGATGGTGTAACCGGCCCATTTGCCGATGGCGAGGTCAGCGTAGGTTGAAAACGAGCCGGTGTCCGGGGAGGCCACAGCCATTTCAGCCAGCATGCGCATCACCAGCACCACCAGGCCGCCCGCCAGGATATAGGCCAGGAT > 3:74935/1‑149 CCAACCGATGGTGTAACCGGCCCATTTGCCGATGGCGAGGTCAGCGTAGGTTGAAAACGAGCCGGTGTCCGGGGAGGCCACAGCCATTTCAGCCAGCATGCGCATCACCAGCACCACCAGGCCGCCCGCCAGGATATAGGCCAGGATGG > 8:16134/1‑149 CAACCGATGGTGTAACCGGCCCATTTGCCGATGGCGAGGTCAGCGTAGGTTGAAAACGAGCCGGTGTCCGGGGAGGCCACCGCCATTTCAGCCAGCCTGCGCATCACCAGCACCACCAGGCCGCCCGCCAGGATATAGGCCAGGATGGT > 3:301156/1‑149 CAACCGATGGTGTAACCGGCCCATTTGCCGATGGCGAGGTCAGCGTAGGTTGAAAACGAGCCGGTGTCCGGGGAGGCCACAGCCATTTCAGCCAGCATGCGCATCACCAGCACCACCAGGCCGCCCGCCAGGATATAGGCCAGGATGGT > 7:33983/1‑149 AACCGATGGTGTAACCGGCCCATTTGCCGATGGCGAGGTCAGCGTAGGTTGAAAACGAGCCGGTGTCCGGGGAGGCCACAGCCATTTCAGCCAGCATGCGCATCACCAGCACCACCAGGCCGCCCGCCAGGATATAGGCCAGGATGGTG > 4:132331/1‑149 AACCGATGGTGTAACCGGCCCATTTGCCGATGGCGAGGTCAGCGTAGGTTGAAAACGAGCCGGTGTCCGGGGAGGCCACAGCCATATCAGCCAGCATGCGCATCACCAGCACCACCAGGCCTCCCGCCAGGATATAGGCCAGGATGGTG < 7:76784/149‑1 ACCAGCACCACCAGGCCGCCCGCCAGGATATAGGCCAGGATGGTGCTGGTGATGCGCATGCTGGCTGAAATGGCTGTGGCCTCCCCGGACACCGGCTCGTTTTCAACCTACGCTGACCTCGCCATCGGCAAATGGGCCGGTTACACCAT > 4:371704/1‑149 CCAGCACCACCAGGCCGCCCGCCAGGATATAGGCCAGGATGGTGCTGGTGATGCGCATGCTGGCTGAAATGGCTGTGGCCTCCCCGGACACCGGCTCGTTTTCAACCTACGCTGACCTCGCCATCGGCAAATGGGCCGGTTACACCATC > 5:54773/1‑149 ACCACCAGGCCGCCCGCCAGGATATAGGCCAGGATGGTGCTGGTGATGCGCATGCTGGCTGAAATGGCTGTGGCCTCCCCGGACACCGGCTCGTTTTCAACCTACGCTGACCTCGCCATCGGCAAATGGGCCGGTTACACCATCGGTTG < 6:54773/149‑1 AGCCAACCGATGGTGTAACCGGCCCATTTGCCGATGGCGAGGTCAGCGTAGGTTGAAAACGAGCCGGTGTCCGGGGAGGCCACAGCCATTTCAGCCAGCATGCGCATCACCAGCACCACCAGGCCGCCCGCCAGGATATAGGCCAGGATGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3310570‑3310418‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggtgCTGGTGATGCGCATGCTGGCTGAAATGGCTGTGGCCTCCCCGGACACCGGCTCGTTTTCAACCTACGCTGACCTCGCCATCGGCAAATGGGCCGGTTACACCATCGGTTG > NC_002947/3310458‑3310567 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |