New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3601262	49 (0.810)	3 (0.050)	3/252	NT	5.6%	intergenic (‑70/‑22)	PP_3176/PP_3177	MFS transporter/hypothetical protein
	?	NC_002947	= 3601318	55 (0.960)					coding (35/1170 nt)	PP_3177	hypothetical protein

CGGAATCAGCCGCAAGGTGATGCGCCGGTACAGCGCGTTGCGGGTGGTGTCCGTGCCTTGGTCAGGGGCGGGGCTGTGTGCCATGATCGGGTTCTCTGTTGTTATGGTTTTCGCCGCGTCGCCTGTTCCGGCGCTCGCCCTGACGAGTCTCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3601109‑3601262 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcgggCACAGCAGCCTGGGCCAAGCGCTGTGCAAAAGCACAAAGACAGGCTAGCCGCAGTCCCCGAGACTCGTCAGGGCGAGCGCCGGAACAGGCGACGCGGCGAAAACCATAACAACAGAGAACCCGATCATGGCACACAGCCCCGCCCCT  <  NC_002947/3601318‑3601172                                                                                                                                                                                                                                                                                                               CGGAATCAGCCGCAAGGTGATGCGCCGGTACAGCGCGTTGCGGGTGGTGTCCGTGCCTTGGTCAGGGGCGGGGCTGTGTGCCATGATCGGGTTCTCTGTTGTTATGGTTTTCGCCGCGTCGCCTGTTCCGGCGCTCGCCCTGACGAGTC                                                                                                                                                          >  7:58953/1‑149    AATCAGCCGCAAGGTGATGCGCCGGTACAGCGCGTTGCGGGTGGTGTCCGTGCCTTGGTCAGGGGCGGGGCTGTGTGCCATGATCGGGTTCTCTGTTGTTATGGTTTTCGCCGCGTCGCCTGTTCCGGCGCTCGCCCTGACGAGTCTCG                                                                                                                                                       <  6:367736/149‑1     ATCAGCCGCAAGGTGATGCGCCGGTACAGCGCGTTGCGGGTGGTGTCCGTGCCTTGGTCAGGGGCGGGGCTGTGTGCCATGATCGGGTTCTCTGTTGTTATGGTTTTCGCCGCGTCGCCTGTTCCGGCGCTCGCCCTGACGAGTCTCGG                                                                                                                                                      <  5:154242/149‑1      TCAGCCGCAAGGTGATGCGCCGGTACAGCGCGTTGCGGGTGGTGTCCGTGCCTTGGTCAGGGGCGGGGCTGTGTGCCATGATCGGGTTCTCTGTTGTTATGGTTTTCGCCGCGTCGCCTGTTCCGGCGCTCGCCCTGACGAGTCTCGGG                                                                                                                                                     <  7:219855/149‑1      TCAGCCGCAAGGTGATGCGCCGGTACAGAGCGTTGCGGGTGGTGTCCGTGCCTTGGTCAGGGGCGGGGCTGTGTGCCATGATCGGGTTCTCTGTTGTTATGGTTTTCGCCGAGTCGCCTGTTCCGGCGCTCTCCCTGACGAGTCTCGGG                                                                                                                                                     >  8:156631/1‑149                                                                     CGGGGCTGTGTGCCATGATCGGGTTCTCTGTTGTTATGGTTTTCGCCGCGTCGCCTGTTCCGGCGCTCGCCCTGACGAGTCTCGGGCACAGCAGCCTGGGCCAAGCGCTGTGCAAAAGCACAAAGACAGGCTAGCCGCAGTCCCCGAGA                                                                                      <  8:58953/149‑1                                                                                                          GGTTTTCGCCGCGTCGCCTGTTCCGGCGCTCGCCCTGACGAGTCTCGGGCACAGCAGCCTGGGCCAAGCGCTGTGCAAAAGCACAAAGACAGGCTAGCCGCAGTCCCCGAGACTC                                                                                   <  7:168790/115‑1                                                                                                          GGTTTTCGCCGCGTCGCCTGTTCCGGCGCTCGCCCTGACGAGTCTCGGGCACAGCAGCCTGGGCCAAGCGCTGTGCAAAAGCACAAAGACAGGCTAGCCGCAGTCCCCGAGACTC                                                                                   >  8:168790/1‑115                                                                                                                                                        GGGCACAGCAGCCTGGGCCAAGCGCTGTGCAAAAGCACAAAGACAGGCTAGCCGCAGTCCCCGAGACTCGTCAGGGCGAGCGCCGGAACAGGCGACTCGGCGAAAACCACAACAACAGAGAACCCGATCATGGCACACAGCCCCGCCCC   >  3:201548/1‑149                                                                                                                                                          GCACAGCAGCCTGGGCCAAGCGCTGTGCAAAAGCACAAAGACAGGCTAGCCGCAGTCCCCGAGACTCGTCAGGGCGAGCGCCGGAACAGGCGACGCGGCGAAAACCATAACAACAGAGAACCCGATCATGGCACACAGCCCCGCCCCT  >  6:60933/1‑148                                                                                                                                                                                                                                                                                                               CGGAATCAGCCGCAAGGTGATGCGCCGGTACAGCGCGTTGCGGGTGGTGTCCGTGCCTTGGTCAGGGGCGGGGCTGTGTGCCATGATCGGGTTCTCTGTTGTTATGGTTTTCGCCGCGTCGCCTGTTCCGGCGCTCGCCCTGACGAGTCTCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3601109‑3601262 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcgggCACAGCAGCCTGGGCCAAGCGCTGTGCAAAAGCACAAAGACAGGCTAGCCGCAGTCCCCGAGACTCGTCAGGGCGAGCGCCGGAACAGGCGACGCGGCGAAAACCATAACAACAGAGAACCCGATCATGGCACACAGCCCCGCCCCT  <  NC_002947/3601318‑3601172

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.