New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3711571 =	45 (0.750)	4 (0.070)	4/244	NT	8.5%	coding (120/759 nt)	paaC	ring 1,2‑phenylacetyl‑CoA epoxidase subunit beta
	?	NC_002947	3711634 =	44 (0.790)					coding (57/759 nt)	paaC	ring 1,2‑phenylacetyl‑CoA epoxidase subunit beta

GAGCTGCCCGACGAAGTCGGACACATGTGAGGTGGGCCATGCATAAAGAAGCCCTTATCCCCTACCTGCTGTTGCTCGGCGACAGCGCCCTGGTCCAGGGCCAGCGCCTCTGCGAATGGTGTGGCCGTGCCCCGGCCATCGAGGAAGAGCTGGCCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3711728‑3711571 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggccctgGACCAGGGCGCTGTCGCCGAGCAACAGCAGGTAGGGGATAAGGGCTTCTTTATGCATGGCCCACCTCACATGTGTCCGACTTCGTCGGGCAGCTCGTAGAAGCTGGCATGGCGATAGACCTTGTCGTCCGAGGGGGCGAACAGCGG  >  NC_002947/3711634‑3711779                                                                                                                                                                                                                                                                                                                  GAGCTGCCCGACGAAGTCGGACACATGTGAGGTGGGCCATGCATAAAGAAGCCCTTATCCCCTACCTGCTGTTGCTCGGCGACAGCGCCCTGGTCCAGGGCCAGCGCCTCTGCGAATGGTGTGGCCGTGCCCCGGCCATCGAGGAAGAG                                                                                                                                                             <  8:120606/149‑1        CCGACGAAGTCGGACACATGTGAGGTGGGCCATGCATAAAGAAGCCCTTATCCCCTACCTGCTGTTGCTCGGCGACAGCGCCCTGGGCCAGGGCCAGCGCCTCTGCGAATGGTGTGGCCGTGCCCCGGCCATCGAGGAAGAGCTGGCCC                                                                                                                                                      <  5:375134/149‑1          GACGAAGTCGGACACATGTGAGGTGGGCCATGCATAAAGAAGCCCTTATCCCCTACCTGCTGTTGCTCGGCGACAGCGCCCTGGTCCAGGGCCAGCGCCTCTGCGAATGGTGTGTCCGTGCCCCGGCCATCGAGGAAGAGCTGGCCCT                                                                                                                                                     >  5:190207/1‑148                                                                                                CAGGGCCAGCGCCTCTGCGAATGGTGTGGCCGTGCCCCGGCCATCGAGGAAGAGCTGGCCCTGGACCAGGGCGCTGTCGCCGAGCAACAGCAGGTAGGGGATAAGGGCTTCTTTATGCATGGCCCACCTCACATGTGTCCGACTTCGTC                                                              >  5:170745/1‑149                                                                                                 AGGGCCAGCGCCTCTGCGAATGGTGTGGCCGTGCCCCGGCCATCGAGGAAGAGCTGGCCCTGGACCAGGGCGCTGTCGCCGAGCAACAGCAGGTAGGGGATAAGGGCTTCTTTATGCATGGCCCACCTCACATGTGTCCGACTTCGTCG                                                             <  6:170745/149‑1                                                                                                  GGGCCAGCGCCTCTGCGAATGGTGTGGCCGTGCCCCGGCCATCGAGGAAGAGCTGGCCCTGGACCAGGGCGCTGTCGCCGAGCAACAGCAGGTAGGGGATAAGGGCTTCTTTATGCATGGCCCACCTCACATGTGTCCGACTTCGTCGG                                                            >  3:317747/1‑149                                                                                                            CTCTGCGAATGGTGTGGCCGTGCCCCGGCCATCGAGGAAGAGCTGGCCCTGGACCAGGGCGCTGTCGCCGAGCAACAGCAGGTAGGGGATAAGGGCTTCTTTATGCATGGCCCACCTCACATGTGTCCGACTTCGTCGGGCAGCTCGTA                                                  <  4:317747/149‑1                                                                                                                                                     GCTGGCCCTGGACCAGGGCGCTGTCGCCGAGCAACAGCAGGTAGGGGATAAGGGCTTCTTTATGCATGGCCCACCTCACATGTGTCCGACTTCGTCGGGCAGCTCGTAGAAGCTGGCATGGCGATAGACCTTGTCGTCCGAGGGGGCG          >  4:285591/1‑148                                                                                                                                                      CTGGCCCTGGACCAGGGCGCTGTCGCCGAGCAACAGCAGGTAGGGGATAAGGGCTTCTTTATGCATGGCCCACCTCACATGTGTCCGACTTCGTCGGGCAGCTCGTAGAAGCTGGCATGGCGATAGACCTTGTCGTCCGAGGGGGCGAA        >  1:244185/1‑149                                                                                                                                                           CCTGGACCAGGGCGCTGTCGCCGAGCAACAGCAGGTAGGGGATAAGGGCTTCTTTATGCATGGCCCACCTCACATGTGTCCGACTTCGTCGGGCAGCTCGTAGAAGCTGGCATGGCGATAGACCTTGTCGTCCGAGGGGGCGAACAGCG   >  5:16956/1‑149                                                                                                                                                            CTGGACCAGGGCGCTGTCGCCGAGCAACAGCAGGTAGGGGATAAGGGCTTCTTTATGCATGGCCCACCTCACATGTGTCCGACTTCGTCGGGCAGCTCGTAGAAGCTGGCATGGCGATAGACCTTGTCGTCCGAGGGGGCGAACAGCGG  <  3:285591/149‑1                                                                                                                                                              GGACCAGGGCGCTGTCGCCGAGCAACAGCAGGTAGGGGATAAGGGCTTCTTTATGCATGGCCCACCTCACATGTGTCCGACTTCGTCGGGCAGCTCGTAGAAGCTGGCATGGCGATA                                <  1:34177/117‑1                                                                                                                                                              GGACCAGGGCGCTGTCGCCGAGCAACAGCAGGTAGGGGATAAGGGCTTCTTTATGCATGGCCCACCTCACATGTGTCCGACTTCGTCGGGCAGCTCGTAGAAGCTGGCATGGCGATA                                >  2:34177/1‑117                                                                                                                                                                                                                                                                                                                  GAGCTGCCCGACGAAGTCGGACACATGTGAGGTGGGCCATGCATAAAGAAGCCCTTATCCCCTACCTGCTGTTGCTCGGCGACAGCGCCCTGGTCCAGGGCCAGCGCCTCTGCGAATGGTGTGGCCGTGCCCCGGCCATCGAGGAAGAGCTGGCCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3711728‑3711571 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggccctgGACCAGGGCGCTGTCGCCGAGCAACAGCAGGTAGGGGATAAGGGCTTCTTTATGCATGGCCCACCTCACATGTGTCCGACTTCGTCGGGCAGCTCGTAGAAGCTGGCATGGCGATAGACCTTGTCGTCCGAGGGGGCGAACAGCGG  >  NC_002947/3711634‑3711779

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.