| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4065591 | 53 (0.880) | 4 (0.070) | 4/256 | NT | 6.4% | coding (369/1491 nt) | PP_3582 | RND transporter outer membrane protein |
| ? | NC_002947 | = 4065640 | 66 (1.130) | coding (320/1491 nt) | PP_3582 | RND transporter outer membrane protein | |||||
AGGGTTTCGCGCAGCTTGCCCCACAGGTCGATCTCCCAGCTCACGCCCAACTGCGCGTTGTAGGTGTTGCGAATGCCGCTGCTGTTATTGGACAGGCTGGAACTGGAGCTGCCGGTGCCCTGCGCCGAGCGGTTCTTGCTGGTGCTCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4065442‑4065591‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggCCCAGGCGCTGGTGCGCAGCAGCCGTGCGGCGCTGTTCCCCAGCCTGGACCTGAGCACCAGCAAGAACCGCTCGGCGCAGGGCACCGGCAGCTCCAGTTCCAGCCTGTCCAATAACAGCAGCGGCATTCGCAACACCTACAACGCGC < NC_002947/4065640‑4065494 AGGGTTTCGCGCAGCTTGCCCCACAGGTCGATCTCCCAGCTCACGCCCAACTGCGCGTTGTAGGTGTTGCGAATGCCGCTGCTGTTATTGGACAGGCTGGAACTGGAGCTGCCGGTGCCCTGCGCCGAGCGGTTCTTGCTGGTGCTCAG < 6:230710/149‑1 CAGCTTGCCCCACAGGTCGATCTCCCAGCTCACGCCCAACTGCGCGTTGTAGGTGTTGCGAATGCCGCTGCTGTTATTGGACAGGCTGGAACTGGAGCTGCCGGTGCCCTGCGCCGAGCGGTTCTTGCTGGTGCTCAGGCCCAGGCGCT > 7:79085/1‑149 CGCGTTGTAGGTGTTGCGAATGCCGCTGCTGTTATTGGACAGGCTGGAACTGGAGCTGCCGGTGCCCTGCGCCGAGCGGTTCTTGCTGGTGCTCAGGCCCAGGCGCTGGTGCGCAGCAGCCGTGCGGCGCTGTTCCCCAGCCTGGACCT < 8:79085/149‑1 TTATTGGTCTGGCTGGAACTGGAGCTGCCGTTGCCCTGCGCCGAGCGGTTCTTGCTGGTGCTCAGGCCCAGGCGGTGGTGCGCAGCAGCCGTGCGGCGCTGTTCCCCAGCCTGGAC < 8:58070/116‑1 TTATTGGACAGGCTGGAACTGGAGCTGCCGGTTCCCTGCGCCGAGCGGTTCTTGCTGGTGCTCAGGCCCAGGCGCTGGTGCGCAGCAGCCGTGCGGCGCTGTTCCCCAGCCTGGAC > 7:58070/1‑116 AGGCCCAGGCGCTGGTGCGCAGCAGCCGTGCGGCGCTGTTCCCCAGCCTGGACCTGAGCACCAGCAAGAACCGCTCGGCGCAGGGCACCGGCAGCTCCAGTTCCAGCCTGTCCAATAACAGCAGCGGCATTCGCAACACCTACAACGCG < 4:249074/149‑1 GGCCCAGGCGCTGGTGCGCAGCAGCCGTGCGGCGCTGTTCCCCAGCCTGGACCTGAGCACCAGCAAGAACCGCTCGGCGCAGGGCACCGGCAGCTCCAGTTCCAGCCTGTCCAATAACAGCAGCGGCATTCCCAACACCTACAACGCGC < 1:148189/149‑1 AGGGTTTCGCGCAGCTTGCCCCACAGGTCGATCTCCCAGCTCACGCCCAACTGCGCGTTGTAGGTGTTGCGAATGCCGCTGCTGTTATTGGACAGGCTGGAACTGGAGCTGCCGGTGCCCTGCGCCGAGCGGTTCTTGCTGGTGCTCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4065442‑4065591‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggCCCAGGCGCTGGTGCGCAGCAGCCGTGCGGCGCTGTTCCCCAGCCTGGACCTGAGCACCAGCAAGAACCGCTCGGCGCAGGGCACCGGCAGCTCCAGTTCCAGCCTGTCCAATAACAGCAGCGGCATTCGCAACACCTACAACGCGC < NC_002947/4065640‑4065494 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |