| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4095078 = | 47 (0.780) | 6 (0.100) | 4/254 | NT | 11.9% | coding (406/765 nt) | PP_3603 | GntR family transcriptional regulator |
| ? | NC_002947 | 4095123 = | 44 (0.760) | coding (361/765 nt) | PP_3603 | GntR family transcriptional regulator | |||||
CTGGATGCACCGGCTACGGGCGGTTTCCGTATCGACCCGGCCACCGTGGTCACCCTGCGCGAAGTGCTGGCGGTGCTGGAGTTGCGCATTG‑CCCTGGAGATCGAGTCGGCCGGGCTGGCAGCCCAGCGGCGAAGCGACGAAGCCCTGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4095228‑4095078‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccgACTCGATCTCCAGGGCAATGCGCAACTCCAGCACCGCCAGCACTTCGCGCAGGGTGACCACGGTGGCCGGGTCGATACGGAAACCGCCCGTAGCCGGTGCATCCAGCACGAATGTACCGATGCCGTGGCGAGTCTCTACCTGCCC > NC_002947/4095123‑4095267 CTGGATGCACCGGCTACGGGCGGTTTCCGTATCGACCCGGCCACCGTGGTCACCCTGCGCGAAGTGCTGGCGGTGCTGGAGTTGCGCATTG‑CCCTGGAGATCGAGTCGGCCGGGCTGGCAGCCCAGCGGCGAAGCGACGAAGCCCTGGC < 6:170929/149‑1 GATGCACCGGCTACGGGCGGTTTCCGTATCGACCCGGCCACCGTGGTCACCCTGCGCGAAGTGCTGGCGGTGCTGGAGTTGCGCATTGTCCCTGGAGATCGAGTCGGCCGGGCTGGCAGCCCAGCGGCGAAGCGACGAAGCCCTGGC < 1:103640/147‑1 AGTCGGCCGGGCTGGCAGCCCAGCGGCGAAGCGACGAAGCCCTGGCCGACTCGATCTCCAGGGCAATGCGCAACTCCAGCACCGCCAGCACTTCGCGCAGGGTGACCACGGTGGCCGGGTCGATACGGAAACCGCCCGTAGCCGGTGCA > 2:30771/1‑149 AGTCGGCCGGGCTGGCAGCCCAGCGGCGAAGCGACGAAGCCCTGGCCGACTCGATCTCCAGGGCAATGCGCAACTCCAGCACCGCCAGCACTTCGCGCAGGGTGACCACGGTGGCCGGGTCGATACGGAAACCGCCCGTAGCCGGTGC > 5:256239/1‑148 AGTCGGCCGGGCTGGCAGCCCAGCGGCGAAGCGACGAAGCCCTGGCCGACTCGATCTCCAGGGCAATGCGCAACTCCAGCACCGCCAGCACTTCGCGCAGGGTGACCACGGTGGCCGGGTCGATACGGAAACCGCCCGTAGCCGGTGC < 6:256239/148‑1 GGCCGGGCTGGCAGCCCAGCGGCGAAGCGACGAAGCCCTGGCCGACTCGATCTCCAGGGCAATGCGCAACTCCAGCACCGCCAGCACTTCGCGCAGGGTGACCACGGTGGCCGGGTCGATACGGAAACCGCCCGTAGCCGGTGCATC > 6:258320/1‑147 GCCGGGCTGGCAGCCCAGCGGCGAAGCGACGAAGCCCTGGCCGACTCGATCTCCAGGGCAATGCGCAACTCCAGCACCGCCAGCACTTCGCGCAGGGTGACCACGGTGGCCGGGTCGATACGGAAACCGCCCGTAGCCGGTGC > 5:321648/1‑143 GCCGGGCTGGCAGCCCAGCGGCGAAGCGACGAAGCCCTGGCCGACTCGATCTCCAGGGCAATGCGCAACTCCAGCACCGCCAGCACTTCGCGCAGGGTGACCACGGTGGCCGGGTCGATACGGAAACCGCCCGTAGCCGGTGC < 6:321648/143‑1 GGCCGACTCGATCTCCAGGGCAATGCGCAACTCCAGCACCGCCAGCACTTCGCGCAGGGTGACCACGGTGGCCGGGTCGATACGGAAACCGCCCGTAGCCGGTG > 6:280798/1‑104 GCCGACTCGATCTCCAGGGCAATGCGCAACTCCAGCACCGCCAGCACTTCGCGCAGGGTGACCACGGTGGCCGGGTCGATACGGAAACCGCCCGTAGCCGGTGCATCCAGCACGAATGAACCGATGCCGTGGCGAGTCTCTACCTGCCC < 1:30771/149‑1 CTGGATGCACCGGCTACGGGCGGTTTCCGTATCGACCCGGCCACCGTGGTCACCCTGCGCGAAGTGCTGGCGGTGCTGGAGTTGCGCATTG‑CCCTGGAGATCGAGTCGGCCGGGCTGGCAGCCCAGCGGCGAAGCGACGAAGCCCTGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4095228‑4095078‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccgACTCGATCTCCAGGGCAATGCGCAACTCCAGCACCGCCAGCACTTCGCGCAGGGTGACCACGGTGGCCGGGTCGATACGGAAACCGCCCGTAGCCGGTGCATCCAGCACGAATGTACCGATGCCGTGGCGAGTCTCTACCTGCCC > NC_002947/4095123‑4095267 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |