New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4096079	56 (0.930)	3 (0.050)	3/250	NT	5.2%	coding (411/651 nt)	PP_5607	membrane protein
	?	NC_002947	= 4096123	57 (1.000)					coding (455/651 nt)	PP_5607	membrane protein

TGCGGGCCTGGTGTTGCTGCATGGCATGGGCAGTTTGGGCACCGGCTGGTTCCCCTGCGACCAGGGGTGTGCACCGGTACAGCCATCTACCTCGCAGCAACTGCATAACCTGTTTGGTCTGCTGATGTTCCTCTCGCTGACCTTGGCCAGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4095926‑4096079 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgccAGGGCGGGGGAGCCGGCAATGCGGTTGCCTAGCCACGCCCATAGGGCGCTGGCCAAGGTCAGCGAGAGGAACATCAGCAGACCAAACAGGTTATGCAGTTGCTGCGAGGTAGATGGCTGTACCGGTGCACACCCCTGGTCGCAGGG  <  NC_002947/4096123‑4095978                                                                                                                                                                                                                                                                                                              TGCGGGCCTGGTGTTGCTGCATGGCATGGGCAGTTTGGGCACCGGCTGGTTCCCCTGCGACCAGGGGTGTGCACCGGTACAGCCATCTACCTCGCAGCAACTTCATAACCTGTTTGGTCTGCTGATGTTCCTCTCGCTGACCTTGGCCA                                                                                                                                                         <  6:26609/149‑1                                                          CGACCAGGGGTGTGCACCGGTACATCCATCTACCTCGCAGCAACTGCATAACCTGTTTTGTCTGCTGATGTTCCTCTCGCTGACCTTGGCCAGCGCCAGGGCGGGGGAGCCGGCAATGCGGTTGCCTAGCCACGCCCATAGGGCGCTGG                                                                                                <  3:64618/149‑1                                                                   GTGTGCACCGGTACAGCCATCTACCTCGCAGCAACTGCATAACCTGTTTGGTCTGCTGATGTTCCTCTCGCTGACCTTGGCCAGCGCCAGGGCGGGGGAGCCGGCAATGCGGTTGCCTAGCCACGCCCATAGGGCGCTG                                                                                                 <  3:218504/139‑1                                                                   GTGTGCACCGGTACAGCCATCTACCTCGCAGCAACTGCATAACCTGTTTGGTCTGCTGATGTTCCTCTCGCTGACCTTGGCCAGCGCCAGGGCGGGGGAGCCGGCAATGCGGTTGCCTAGCCACGCCCATAGGGCGCTG                                                                                                 >  4:218504/1‑139                                                                                                                                                      GCGCCAGGGCGGGGGAGCCGGCAATGCGGTTGCCTAGCCACGCCCATAGGGCGCTGGCCAAGGTCAGCGAGAGGAACATCAGCAGACCAAACAGGTTATGCAGTTGCTGCGAGGTAGATGGCTGTACCGGTGCACACCCCTGGTCGCAG    <  2:140887/149‑1                                                                                                                                                       CGCCAGGGCGGGGGAGCCGGCAATGCGGTTGCCTAGCCACGCCCATAGGGCGCTGGCCAAGGTCAGCGAGAGGAACATCAGCAGACCAAACAGGTTATGCAGTTGCTGCGAGGTAGATGGCTGTACCGGTGCACACCCCTGGTCGCAGG   <  1:193357/149‑1                                                                                                                                                       CGCCAGGGCGGGGGAGCCGGCAATGCGGTTGCCTAGCCACGCCCATAGGGCGCTGGCCAAGGTCAGCGAGAGGAACATCAGCAGACCAAACAGGTTATGCAGTTGCTGCGAGGTAGATGGCTGTACCGGTGCACACCCCTGGTCGCAGG   <  8:167266/149‑1                                                                                                                                                         CCAGGGCGGGGGAGCCGGCAATGCGGTTGCCTAGCCACGCCCATAGGGCGCTGGCCAAGGTCAGCGAGAGGAACATCAGCAGACCAAACAGGTTATGCAGTTGCTGCGAGGTAGATGGCTGTACCGGTGCACACCCCTGGTCGCAGGG  >  5:83454/1‑148                                                                                                                                                                                                                                                                                                              TGCGGGCCTGGTGTTGCTGCATGGCATGGGCAGTTTGGGCACCGGCTGGTTCCCCTGCGACCAGGGGTGTGCACCGGTACAGCCATCTACCTCGCAGCAACTGCATAACCTGTTTGGTCTGCTGATGTTCCTCTCGCTGACCTTGGCCAGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4095926‑4096079 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgccAGGGCGGGGGAGCCGGCAATGCGGTTGCCTAGCCACGCCCATAGGGCGCTGGCCAAGGTCAGCGAGAGGAACATCAGCAGACCAAACAGGTTATGCAGTTGCTGCGAGGTAGATGGCTGTACCGGTGCACACCCCTGGTCGCAGGG  <  NC_002947/4096123‑4095978

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.