| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4546234 = | 59 (0.980) | 4 (0.070) | 4/250 | NT | 6.6% | coding (1112/1491 nt) | pydP | NCS1 family transporter PydP |
| ? | NC_002947 | 4546306 = | 57 (1.000) | coding (1040/1491 nt) | pydP | NCS1 family transporter PydP | |||||
TGTCGACCAACACCGCGGCGAACATCGTGTCGCCTACCAATGACTTCCAGAACATTGCCCCACGCCTGATCGGCCGAAGCCGCGCGGTATGGCTGACCGGCTTTATCGGCCTGGCGCTGATGGGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4546360‑4546234‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggggcaATGTTCTGGAAGTCATTGGTAGGCGACACGATGTTCGCCGCGGTGTTGGTCGACAGCGTGGCGATCACGATCAGCGCCATGGCCAGGGCCACCCAGAACGGGCTTTGAATCTTGCCGATCAGGCTGACCGGGTCGGACACCGTCT > NC_002947/4546306‑4546450 TGTCGACCAACACCGCGGCGAACATCGTGTCGCCTACCAATGACTTCCAGAACATTGCCCCACGCCTGATCGGCCGAAGCCGCGCGGTATGGCTGACCGGCTTTATCAGCCTGGCGCTGATGGGG < 5:149324/125‑1TGTCGACCAACACCGCGGCGAACATCGTGTCGCCTACCAATGACTTCCAGAACATTGCCCCACGCCTGATCGGCCGAAGCCGCGCGGTATGGCTGACCGGCTTTATCAGCCTGGCGCTGATGGGG > 6:149324/1‑125 CATTGCCCCACGCCTGATCGGCCGAAGCCGCGCGGTATGGCTGACCGGCTTTATCGGCCTGGCGCTGATGGGGCAATGTTCTGGAAGTCATTGGTAGGCGACACGATGTTCGCCGCGGTGTTGGTCGACAGCGTGGCGATCACGATCAG > 8:233796/1‑149 ATTGCCCCACGCCTGATCGGCCGAAGCCGCGCGGTATGGCTGACCGGCTTTATCGGCCTGGCGCTGATGGGGCAATGTTCTGGAAGTCATTGGTAGGCGACACGATGTTCGCCGCGGTGTTGGTCGACAGCGTGGCGATCACGATCAGC > 1:14050/1‑149 CGGTATGGCTGACCGGCTTTATCGGCCTGGCGCTGATGGGGCAATGTTCTGGAAGTCATTGGTAGGCGACACGATGTTCGCCGCGGTGTTGGTCGACAGCGTGGCGATCACGATCAGCGCCATGGCCAGGGCCACCCAGAACGGGCTTT < 7:233796/149‑1 GCGCTGATGGGGCAATGTTCTGGAAGTCATTGGTAGGCGACACGATGTTCGCCGCGGTGTTGGTCGACAGCGTGGCGATCACGATCAGCGCCATGGCCAGGGCCACCCAGAACGGGCTTTGAATCTTGCCGATCAGGCTGACCGGGTC < 2:14050/148‑1 GGCAATGTTCTGGAAGTCATTGGTAGGCGACACGATGTTCGCCGCGGTGTTGGTCGACAGCGTGGCGATCACGATCAGCGCCATGGCCAGGGCCACCCAGAACGGGCTTTGAATCTTGCCGATCAGGCTGACCGGGTCGGACACCGTCT > 1:265197/1‑149 TGTCGACCAACACCGCGGCGAACATCGTGTCGCCTACCAATGACTTCCAGAACATTGCCCCACGCCTGATCGGCCGAAGCCGCGCGGTATGGCTGACCGGCTTTATCGGCCTGGCGCTGATGGGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4546360‑4546234‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggggcaATGTTCTGGAAGTCATTGGTAGGCGACACGATGTTCGCCGCGGTGTTGGTCGACAGCGTGGCGATCACGATCAGCGCCATGGCCAGGGCCACCCAGAACGGGCTTTGAATCTTGCCGATCAGGCTGACCGGGTCGGACACCGTCT > NC_002947/4546306‑4546450 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |