| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4586807 = | 64 (1.060) | 4 (0.070) | 4/250 | NT | 6.0% | coding (1008/1683 nt) | PP_4063 | long‑chain fatty acid‑‑CoA ligase |
| ? | NC_002947 | 4586842 = | 64 (1.120) | coding (973/1683 nt) | PP_4063 | long‑chain fatty acid‑‑CoA ligase | |||||
CGCCGTGGCCGAGGAGCGCGCCACCATCCTCTACGGCGTACCGACCATGTTCATCGCCATGCTCGACCACCCGTCCCGTGCCCACATGGACCTGTCGACCCTGCGCAGCGGCATCATGGCCGGCGCTACCTGCCCGATCGAGGTGATGCGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4586960‑4586807‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccggCCATGATGCCGCTGCGCAGGGTCGACAGGTCCATGTGGGCACGGGACGGGTGGTCGAGCATGGCGATGAACATGGTCGGTACGCCGTAGAGGATGGTGGCGCGCTCCTCGGCCACGGCGCGCAAGGTAAGTTCGGCGTCGAAAGCATC > NC_002947/4586842‑4586989 CGCCGTGGCCGAGGAGCGCGCCACCATCCTCTACGGCGTACCGACCATGTTCATCGCCATGCTCGACCACCCGTCCCGTGGCCACATGGACCTGTCGACCGTGCGCAGCGGCATCATGGCCGGCGCTACCTGCCCGATCGAGGTGATGC < 5:313447/149‑1 GTGGCCGAGGAGCGCGCCACCATCCTCTACGGCGTACCGACCATGTTCATCGCCATGCTCGACCACCCGTCCCGTGCCCACATGGACCTGTCGACCCTGCGCAGCGGCATCATGGCCGGCGCTACCTGCCCGATCGAGGTGATGCGCCG > 8:157630/1‑149 TGGCCGAGGAGCGCGCCACCATCCTCTACGGCGTACCGACCATGTTCATCGCCATGCTCGACCACCCGTCCCGTGCCCACATGGACCTGTCGACCCTGCGCAGCGGCATCATGGCCGGCGCTACCTGCCCGATCGAGGTGATGCGCCGG < 3:24072/149‑1 ATGGCCGGCGCTACCTGCCCGATCGAGGTGATGCGCCGGCCATGATGCCGCTGCGCAGGGTCGACAGGTCCATGTGGGCACGGGACGGGTGGTCGAGCATGGCGATGAACATGGTCGGTACGCCGTAGA > 3:218083/1‑129 ATGGCCGGCGCTACCTGCCCGATCGAGGTGATGCGCCGGCCATGATGCCGCTGCGCAGGGTCGACAGGTCCATGTGGGCACGGGACGGGTGGTCGAGCATGGCGATGAACATGGTCGGTACGCCGTAGA < 4:218083/129‑1 CCGGCGCTACCTGCCCGATCGAGGTGATGCGCCGGCCATGATGCCGCTGCGCAGGGTCGACAGGTCCATGTG > 1:371367/1‑72 CCGGCGCTACCTGCCCGATCGAGGTGATGCGCCGGCCATGATGCCGCTGCGCAGGGTCGACAGGTCCATGTG < 2:371367/72‑1 ctCCGGCCTTGATTCCGCTGCGCAGGTTCGAAACGTCCATGTGGGCACGTGACGGGTGGTCGAGCATGGCGATGAACATGGTCTGTACGCCGTAGAGGATGGTGGCGCGCTCCTCGGCCACGGCGCGCAAGGTAAGTTCGGCGTCGAAA < 8:245906/147‑1 GCCATGATGCCGCTGCGCAGGGTCGACAGGTCCATGTGGGCACGGGACGGGTGGTCGAGCATGGCGATGAACATGGTCGGTACGCCGTAGAGGATGGTGGCGCGCTCCTCGGCCACGGCGCGCAAGGTAAGTTCGGCGTCGAAAGCATC > 6:13968/1‑149 CGCCGTGGCCGAGGAGCGCGCCACCATCCTCTACGGCGTACCGACCATGTTCATCGCCATGCTCGACCACCCGTCCCGTGCCCACATGGACCTGTCGACCCTGCGCAGCGGCATCATGGCCGGCGCTACCTGCCCGATCGAGGTGATGCGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4586960‑4586807‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccggCCATGATGCCGCTGCGCAGGGTCGACAGGTCCATGTGGGCACGGGACGGGTGGTCGAGCATGGCGATGAACATGGTCGGTACGCCGTAGAGGATGGTGGCGCGCTCCTCGGCCACGGCGCGCAAGGTAAGTTCGGCGTCGAAAGCATC > NC_002947/4586842‑4586989 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |