New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4808179	1 (0.020)	28 (0.510)	24/240	NT	45.9%	intergenic (‑288/‑267)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	5988765 =	65 (1.190)					intergenic (+59/‑487)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA

GGTGTGTATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCC‑GGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4808023‑4808179 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGC  >  NC_002947/5988765‑5988909                                                                                                                                                                                                                                                                                                                 GGTGTGTATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGGTTTCAGCGCCTGGGAGGTGTTCGCC‑GGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGC                                                                                                                                                           <  3:173035/149‑1     TGTATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCC‑GGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCC                                                                                                                                                       <  2:7343/149‑1          AGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCC‑GGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGCGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGC                                                                                                                                                  >  1:61200/1‑149                 TGGGCGTAATTGTCGCTTTGGCGGTTAGGTGTTGGGCGGCAGGTTGTCAGCGCCTGGGAGGTGTTCGCC‑GGGTGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCGCGGGCGGCGCTc                                                                                                                                           <  8:264287/149‑2                       gcATTCGCGGTTTGGGGGGTAGGTGTTTGGCGGTAGGTTTTCAGCGCCTGTTAGGTGTTCGGC‑GGTTGTTTTTCAGCGCCTGGGAGGTGTTCGCTGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGG                                                                                                                                     <  4:359191/147‑1                                     GCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCC‑GGGGGATTTTCAGCGCCTGGGAGGTCTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGACGACCGCGCGGAGCTTCGCGGGTAAAGCCGCTCCT                                                                                                                        >  2:190849/1‑148                                       GGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGGATTTTCAGCGACTGGGAGTTCTACGCCGGGACAGTTTCAGCGCCTGGGAGATAGAGCGCCGCCCGAGCGGCGCTTCGCGGCTAAACACGCTCCTAC                                                                                                                      >  1:88629/1‑149                                        gtTAGGTGTTTGGCGGTTGTTTTTCTGCGCTTGGGAGGTGTTCGCC‑GGGGGATTTTCTGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGT                                                                                                                    <  4:188237/147‑1                                         GTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCC‑GGGGGAGTTTCAGCGCCTGGGAGGTCTGCGCCGGGAGAGTTTCAGCGCCTGGGTGATCGAGCGCCGCACGGGCGGCGCTTCGCGGGTAAACTCGCTCCTACt                                                                                                                     >  8:98905/1‑146                                          TAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCC‑GGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTT                                                                                                                  >  1:153853/1‑149                                          TAGGCGTGTGGCGGTAGTTTCGCTGGGGCTGGTAGGTGTTCGCC‑GGGGGATTGTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTT                                                                                                                  <  3:123460/149‑1                                              TGTTTGGCGGTAGGTTTGCAGGGGCTGGTTGGTGTTCGCC‑GGGTGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTT                                                                                                              <  4:180400/149‑1                                                  tgtCGGGTGGTTTTCAGCGCCTGGTAGGTGTTCGCC‑GGGGGTTTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGG                                                                                                           <  1:190849/145‑1                                                  TGGCGGGAGGTTGTCAGCGCGGTGGAGGTGTTCGGC‑GGGTGAGTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGG                                                                                                           <  5:168901/148‑1                                                             tcgctGCGGCTGGTCGGTGTTGGGC‑GGTTGAGTCTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTC                                                                                                <  8:21590/143‑1                                                                  tgGCCTGGGAGGTGTTCGGC‑GGTTGATTTTCAGCGCCTGGGAGGTGTTCGGCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGG                                                                                          <  7:179926/147‑1                                                                  GCGCCTGGGAGGTGTTCGCC‑GGGGGATTTTCAGCGCCTGGGAGGTGTACGCCGGGAGAGTTTCAGCGGCTGGGAGATAGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACTTTTGTTTCGGGCCAATTATTgaggggg                                                                                          >  6:62435/1‑142                                                                   CGCCTGGGAGGTGTTCGCC‑GGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCCGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGAGCGGCGCTTCGCGGCTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGG                                                                                          >  5:155745/1‑148                                                                       TGGGAGGTGGTCGCC‑GGGTGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGGGAttt                                                                                     <  5:62435/149‑4                                                                             GTGTTCGCC‑GGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAA                                                                                                                                  <  3:368101/98‑1                                                                             GTGTTCGCC‑GGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAA                                                                                                                                  >  4:368101/1‑98                                                                                        GGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGC                                                                                                                                        <  7:242014/82‑1                                                                                        GGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGC                                                                                                                                        >  8:242014/1‑82                                                                                                       CTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGGGATTTGCGCGCGACCGCCTTGGGGCATGTCTCGATA                                                      <  2:61200/149‑1                                                                                                              GTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGGGATTTGCGCGCGACCGCCTTGGGGCATGTCTCGATATCGCGTC                                               <  2:153853/149‑1                                                                                                                     gCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGGGATTTGCGCGCGACCGCCTTGGGGCATGTCTCGATATCGCGTCGTACAA                                         <  2:200611/147‑1                                                                                                                     CCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGGGATTTGCGCGCGACCGCCTTGGGGCATGTCTCGATATCGCGTCGTACAAA                                        >  3:151871/1‑149                                                                                                                           gtGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGGGATTTGCGCGCGACCGCCTTGGGGCATGTCTCGATATCGCGTCGTACAAACAAGGC                                  <  7:98905/147‑1                                                                                                                              TTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCTGCGCTTCGCGGGTAACCCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGGGATTTGCGCGCGACCGCCTTGGGGCATGTCTCGATATCGCGTCGTACAAACAAGGCGGT                               <  5:326934/149‑1                                                                                                                                   GCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGGGATTTGCGCGCGACCGCCTTGGGGCATGTCTCGATATCGCGTC                                               >  4:347552/1‑128                                                                                                                                   GCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAATTATTCCTGCGGGATTTGCGCGCGACCGCCTTGGGGCATGTCTCGATATCGCGTC                                               <  3:347552/128‑1                                                                                                                                             cgcgaAGCGCCGCGCGGGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCA                >  3:106075/6‑149                                                                                                                                                         CCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTG    <  1:194407/149‑1                                                                                                                                                          CCGCGCGGCGCTTCGCGGGTAAACAAGCTCCTACGTTTGTTTCGGGCCAGTTATTACTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAAAAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGG   >  1:249682/1‑149                                                                                                                                                           cggGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGC  <  4:106075/146‑1                                                                                                                                                           CGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGC  <  3:191662/149‑1                                                                                                                                                                                                                                                                                                                 GGTGTGTATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCC‑GGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4808023‑4808179 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccgcccgcgCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGC  >  NC_002947/5988765‑5988909

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.