New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5474952	65 (1.080)	3 (0.050)	3/246	NT	5.1%	intergenic (‑158/‑148)	proA/PP_4812	gamma‑glutamyl phosphate reductase/3‑methyladenine DNA glycosylase
	?	NC_002947	= 5475004	51 (0.910)					intergenic (‑210/‑96)	proA/PP_4812	gamma‑glutamyl phosphate reductase/3‑methyladenine DNA glycosylase

GGTGTCTTGGCGAAGGGGAAATCGGCTGATTATAACTGCCGCGCAGGTGTACGCCCAGCGGCGGGTGGCGGATGGTAGAAAATGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5474801‑5474952 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccctttCGCGGGTAA‑ACCCGCTCCTACACAAATCCCAGTGGGAGCGGGCGCGCCCGCTAAAGGGCCGCGACAGGAGATGGAAATCTCGATAACCCCGGTTACATCTTTCCTACACATTGCCCCATCCATTTTCTACCATCCGCCACCCGCCG  <  NC_002947/5475004‑5474859                                                                                                                                                                                                                                                                                                             GGTGTCTTGGCGAAGGGGAAATCGGCTGATTATAACTGCCGCGCAGGTGTACGCCCAGCGGCGGGTGGCGGATGGTAGAAAATGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCC                                                                                                                                                        >  1:158037/1‑149     TCTTGGCGAAGGGGAAATCGGCTGATTATAACTGCCGCGCAGGTGTACGCCCAGCGGCGGGTGGCGGATGGTAGAAAATGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTT                                                                                                                                                      >  4:318103/1‑147       TTGGCGAAGGGGAAATCGGCTGATTATAACTGCCGCGCAGGTGTACGCCCAGCGGCGGGTGGCGGATGGTAGAAAATGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCG                                                                                                                                                            >  1:43512/1‑139       TTGGCGAAGGGGAAATCGGCTGATTATAACTGCCGCGCAGGTGTACGCCCAGCGGCGGGTGGCGGATGGTAGAAAATGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCG                                                                                                                                                            <  2:43512/139‑1                  GAAATCGGCTGATTATAACTGCCGCGCAGGTGTACGCCCAGCGGCGGGTGGCGGATGGTAGAAAATGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGC                                                                                                                                                             <  5:77972/127‑1                  GAAATCGGCTGATTATAACTGCCGCGCAGGTGTACGCCCAGCGGCGGGTGGCGGATGGTAGAAAATGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGC                                                                                                                                                             >  6:77972/1‑127                                                            GGCGGGTGGCGGATGGTAGAAAATGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTCGCGGGTAA‑ACCCGCTCCTACACAAATCCCAGTGGGAGCGGGCGCGCCCGCTAAAG                                                                                            <  3:299951/149‑1                                                             GCGGGTGGCGGATGGTAGAAAATGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTCGCGGGTAA‑ACCCGCTCCTACACAAATCCCAGTGGGAGCGGGCGCGCCCGCTAAAGG                                                                                           <  5:271647/149‑1                                                                 GTGGCGGATGGTAGAAAATGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTTCGCGGGTAACACCCGCTCCTACACAAATCCCAGTGGGAGCGGGCGCGCCCGCTAAAGGGCC                                                                                        <  1:94327/149‑1                                                                                                                                                    CCTTTCGCGGGTAA‑ACCCGCTCCTACACAAATCCCAGTGGGAGCGGGCGCGCCCGCTAAAGGGCCGCGACAGGAGATGGAAATCTCGATAACCCCGGTTACATCTTTCCTACACATTGCCCCATCCATTTTCTACCATCCGCCACCCGC    >  5:361198/1‑149                                                                                                                                                     CTTTCGCGGGTAA‑ACCCGCTCCTACACAAATCCCAGTGGGAGTCGGCGCGCCCGCTAAAGGGCCGCGACAGCAGATGGAAATCTCGATAACCCCGGTTACATCTTTCCTACACATTGCCCCATCCATTTTCTACCATCCGCCACCCGCC   >  8:11101/1‑149                                                                                                                                                     CTTTCGCGGGTAA‑ACCCGCTCCTACACAAATCCCAGTGGGAGCGGGCGCGCCCGCTAAAGGGCCGCGACAGGAGATGGAAATCTCGATAACCCCGGTTACATCTTTCCTACACATTGCCCCA                              <  1:258876/122‑1                                                                                                                                                     CTTTCGCGGGTAA‑ACCCGCTCCTACACAAATCCCAGTGGGAGCGGGCGCGCCCGCTAAAGGGCCGCGACAGGAGATGGAAATCTCGATAACCCCGGTTACATCTTTCCTACACATTGCCCCA                              >  2:258876/1‑122                                                                                                                                                      TTTCGCGGGTAA‑ACCCGCTCCTACACAAATCCCAGTGGGAGCGGGCGCGCCCGCTAAAGGGCCGCGACAGGAGATGGAAATCTCGATAACCCCGGTTACATCTTTCCTACACATTGCCCCATCCATTTTCTACCATCCGCCACCCGCCG  >  6:205336/1‑149                                                                                                                                                      TTTCGCGGGTAA‑ACCCGCTCCTACACAAATCCCAGTGGGAGCGGGCGCGCCCGCTAAAGGGCCGCGACAGGAGATGGAAATCTCGATAACCCCGGTTACATCTTTCCTACACATTGCCCCATCCATTTTCTACCATCCGCCACCCGCCG  >  7:76632/1‑149                                                                                                                                                                                                                                                                                                             GGTGTCTTGGCGAAGGGGAAATCGGCTGATTATAACTGCCGCGCAGGTGTACGCCCAGCGGCGGGTGGCGGATGGTAGAAAATGGATGGGGCAATGTGTAGGAAAGATGTAACCGGGGTTATCGAGATTTCCATCTCCTGTCGCGGCCCTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5474801‑5474952 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccctttCGCGGGTAA‑ACCCGCTCCTACACAAATCCCAGTGGGAGCGGGCGCGCCCGCTAAAGGGCCGCGACAGGAGATGGAAATCTCGATAACCCCGGTTACATCTTTCCTACACATTGCCCCATCCATTTTCTACCATCCGCCACCCGCCG  <  NC_002947/5475004‑5474859

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.