New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5633087 =	81 (1.350)	5 (0.090)	5/250	NT	6.1%	coding (2617/3954 nt)	putA	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase
	?	NC_002947	5633124 =	76 (1.330)					coding (2654/3954 nt)	putA	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase

TGCAAGCACAGTACGCGCAGGGCCGAGCAACGCTGGCCGGCACTGTCGAAGGCCGAGGACACCACGTCGATCACGACCTGTTCGGTCAGTGCCGAGGAGTCGACGATCATCGCGTTCTGGCCGCCGGTTTCGGCGATCAGCGGGATCGGGCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5633241‑5633087 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggccAGAACGCGATGATCGTCGACTCCTCGGCACTGACCGAACAGGTCGTGATCGACGTGGTGTCCTCGGCCTTCGACAGTGCCGGCCAGCGTTGCTCGGCCCTGCGCGTACTGTGCTTGCAGGAAGACTCCGCCGACCGCGTAATCGAGA  >  NC_002947/5633124‑5633270                                                                                                                                                                                                                                                                                                                TGCAAGCACAGTACGCGCAGGGCCGAGCAACGCTGGCCGGCACTGTCGAAGGCCGAGGACACCACGTCGATCACGACCTGTTCGGTCAGTGCCGAGGAGTCGACGATCATCGCGTTCTGGCCGCCGGTTTCGGCGATCAGCGGGATCGG                                                                                                                                                           >  5:274946/1‑149   CAAGCACAGTACGCGCAGGGCCGAGCAACGCTGGCCGGCACTGTCGAAGGCCGAGGACACCACGTCGATCACGACCTGTTCGGTCAGTGCCGAGGAGTCGACGATCATCGCGTTCTGGCCGCCGGTTTCGGCGATCAGCGGGATCGGGC                                                                                                                                                         <  6:195784/149‑1    AAGCACAGTACGCGCAGGGCCGAGCAACGCTGGCCGGCACTGTCGAAGGCCGAGGACACCACGTCGATCACGACCTGTTCGGTCAGTGCCGAGGAGTCGACGATCATCGCGTTCTGGCCGCCGGTTTCGGCGATCAGCGGGATCGGGCG                                                                                                                                                        <  3:148974/149‑1     AGCACAGTACGCGCAGGGCCGAGCAACGCTGGCCGGCACTGTCGAAGGCCGAGGACACCACGTCGATCACGACCTGTTCGGTCAGTGCCGAGGAGTCGACGATCATCGCGTTCTGGCCGCCGGTTTCGGCGATCAGCGGGATCGGGCGG                                                                                                                                                       <  4:69930/149‑1                                                                                                                    TCTGGCCGCCGGTTTCGGCGATCAGCGGGATCGGGCGGCCAGAACGCGATGATCGTCGACTCCTCGGCACTGACCGAACAGGTCGTGAT                                                                                                    >  5:351431/1‑89                                                                                                                    TCTGGCCGCCGGTTTCGGCGATCAGCGGGATCGGGCGGCCAGAACGCGATGATCGTCGACTCCTCGGCACTGACCGAACAGGTCGTGAT                                                                                                    <  6:351431/89‑1                                                                                                                       GGCCGCCGGTTTCGGCGATCAGCGGGATCGGGCGGCCAGAACGCGATGATCGTCGACTCCTCGGCACTGACCGAACAGGTCGTGATCGACGTGGTGTCCTCGGCCTTCGACAGTGCCGGCCAGCGTTGCTCGGCCCTGCGCGTACTGTG                                     >  7:252925/1‑149                                                                                                                        GCCGCCGGTTTCGGCGATCAGCGGGATCGGGCGGCCAGAACGCGATGATCGTCGACTCCTCGGCACTGACCGAACAGGTCGTGATCGACGTGGTGTCCTCGGCCTTCGACAGTGCCGGCCAGCGTTGCTCGGCCCTGCGCGTACTGTGC                                    >  6:139055/1‑149                                                                                                                         CCGCCGGTTTCGGCGATCAGCGGGATCGGGCGGCCAGAACGCGATGATCGTCGACTCCTCGGCACTGACCGAACAGGTCGTGATCGACGTGGTGTCCTCGGCCTTCGACAGTGCCGGCCAGCGTTGCTCGGCCCTGCGCGTACTGTGCT                                   >  1:85651/1‑149                                                                                                                                                      GCGGCCAGAACGCGATGATCGTCGACTCCTCGGCACTGACCGAACAGGTCGTGATCGACGGGGTGTCCTCGGCCTTCGACAGTGCCGGCCAGCGTTGCTCGGCCCTGCGCGTACTGTGCTTGCAGGAAGACTCCGCCGACCGCGTAATC      <  5:236956/149‑1                                                                                                                                                        GGCCAGAACGCGATGATCGTCGACTCCTCGGCACTGACCGAACAGGTCGTGATCGACGTGGTGTCCTCGGCCTTCGACAGTGCCGGCCAGCGTTGCTCGGCCCTGCGCGTACTGTGCTTGAAGGAAGACTCCGCCGACCGCGTAATCGA    <  3:239938/149‑1                                                                                                                                                        GGCCAGAACGCGATGATCGTCGACTCCTCGGCACTGACCGAACAGGTCGTGATCGACGGGGTGTCCTCGGCCTTCGACAGTGCCGGCCAGCGTTGCTCGGCCCTGCGCGTACTGTGCTTGCAGGAAGACTCCGCCGACCGCGTAATCGA    <  4:201202/149‑1                                                                                                                                                          CCAGAACGCGATGATCGTCGACTCCTCGGCACTGACCGAACAGGTCGTGATCGACGTGGTGTCCTCGGCCTTCGACAGTGCCGGCCAGCGTTGCTCGGCCCTGCGCGTACTGTGCTTGCAGGAAGACTCCGCCGACCGCGTAATCGAGA  <  8:252925/149‑1                                                                                                                                                                                                                                                                                                                TGCAAGCACAGTACGCGCAGGGCCGAGCAACGCTGGCCGGCACTGTCGAAGGCCGAGGACACCACGTCGATCACGACCTGTTCGGTCAGTGCCGAGGAGTCGACGATCATCGCGTTCTGGCCGCCGGTTTCGGCGATCAGCGGGATCGGGCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5633241‑5633087 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggccAGAACGCGATGATCGTCGACTCCTCGGCACTGACCGAACAGGTCGTGATCGACGTGGTGTCCTCGGCCTTCGACAGTGCCGGCCAGCGTTGCTCGGCCCTGCGCGTACTGTGCTTGCAGGAAGACTCCGCCGACCGCGTAATCGAGA  >  NC_002947/5633124‑5633270

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.