| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5688147 | 61 (1.010) | 4 (0.070) | 3/250 | NT | 6.0% | coding (819/2061 nt) | pilJ | twitching motility protein PilJ |
| ? | NC_002947 | = 5688184 | 67 (1.180) | coding (782/2061 nt) | pilJ | twitching motility protein PilJ | |||||
CGCCAGCAGCCCCAGGACATAGCCGCCAACGGTGTCGAGGGTGCGCCCGCCAGCCAGGTTCTCGAAACCGTTCGCCAGGTGCGACGCTTCGTCGAGCAGGGTTTGCGAAAGGCTGAAGATGTTGCCCGCGGCCTCTCGAACACGGAACAGTTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5687994‑5688147‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagttcgTTGCCGGTTCGGTGGATGAAATCCTCGAAACCTCGCCCGAACTGTTCCGTGTTCGAGAGGCCGCGGGCAACATCTTCAGCCTTTCGCAAACCCTGCTCGACGAAGCGTCGCACCTGGCGAACGGTTTCGAGAACCTGGCTGGCGGGC < NC_002947/5688184‑5688038 CGCCAGCAGCCCCAGGACATAGCCGCCAACGGTGTCTAGGGTGCGCCCGCCAGCCAGGTTCTCGAAACCGTTCGCCAGGTGCGACGCTTCGTCGAGCAGGGTTTGCGAAAGGCTGAAGATGTTGCCCGCGGCCTCTCGAACACGGAACA < 8:83380/149‑1CGCCAGCAGCCCCAGGACATAGCCGCCAACGGTGTCGAGGGTGCGCCCGCCAGCCAGGTTCTCGAAACCGTTCGCCAGGTGCGACGCTTCGTCGAGCAGGGTTTGCGAAAGGCTGAAGATGTTGCCCGCGGCCTCTCGAACACGGAACA < 8:7428/149‑1 AGCAGCCCCAGGACATAGCCGCCAACGGTGTCGAGGGTGCGCCCGCCAGCCAGGTTCTCGAAACCGTTCGCCAGGTGCGACGCTTCGTCGAGCAGGGTTTGCGAAAGGCTGAAGATGTTGCCCGCGGCCTCTCGAACACGGAACAGTTC > 2:125051/1‑149 CAGCCAGGTTCTCGAAACCGTTCGCCAGGTGCGACGCTTCGTCGAGCAGGGTTTGCGAAAGGCTGAAGATGTTGCCCGCGGCCTCTCGAACACGGAACAGTTCGTTGCCGGTTCGGTGGATGAAATCCTCGAAACCTCGCCCGAACTGT < 1:101623/149‑1 CAGCCAGGTTCTCGAAACCGTTCGCCAGGTGCGACGCTTCGTCGAGCAGGGTTTGCGAAAGGCTGAAGATGTTGCCCGCGGCCTCTCGAACACGGAACAGTTCGTTGCCGGTTCGGTGGATGAAATCCTCGAAACCTCGCCCGAACTGT < 1:106585/149‑1 GCCAGGTGCGACGCTTCGTCGAGCAGGGTTTGCGAAAGGCTGAAGATGTTGCCCGCGGCCTCTCGAACACGGAACAGTTCGTTGCCGGTTCGGTGGATGAAATCCTCGAAACCTCGCCCGAACTGTTCC > 1:222917/1‑129 GCCAGGTGCGACGCTTCGTCGAGCAGGGTTTGCGAAAGGCTGAAGATGTTGCCCGCGGCCTCTCGAACACGGAACAGTTCGTTGCCGGTTCGGTGGATGAAATCCTCGAAACCTCGCCCGAACTGTTCC < 2:222917/129‑1 AGTTCGTTGCCGGTTCGGTGGATGAAATCCTCGAAACCTCGCCCGAACTGTTCCGTGTTCGAGAGGCCGCGGGCAACATCTTCAGCCTTTCGCAAACCCTGCTCGACGAAGCGTCGCACCTGGCGAACGGTTTCGAGAACCTGGCTGGC > 2:154859/1‑149 TTCGTTTCCGGTTCGGTGGATGTAATCCTCGTAACCTCGCCCGAACTGTTCCGTGTTCGAGAGGCCGCGGGCAACATCTTCAGCCTTTCGCAAACCCTGCTCGACGTAGCGTCGCACCTGGCGAACGGTTTGGAGAACCTGGCTGGCtg < 8:25648/149‑3 TTCGTTGCCGGTTCGGTGGATGAAATCCTCGAAACCTCGCCCGAACTGTTCCGTGTTCGAGAGGCCGCGGGCAACATCTTCAGCCTTTCGCAAACCCTGCTCGACGAAGCGTCGCACCTGGCGAACGGTTTCGAGAACCTGGCTGGCGG < 2:10113/149‑1 GTTGCCGGTTCGGTGGATGAAATCCTCGAAACCTCGCCCGAACTGTTCCGTGTTCGAGAGGCCGCGGGCAACATCTTCAGCCTTTCGCAAACCCTGCTCGACGAAGCGTCGCACCTGGCGAACGGTTTCGAGAACCTGGCTGGCGGGC < 8:215433/148‑1 CGCCAGCAGCCCCAGGACATAGCCGCCAACGGTGTCGAGGGTGCGCCCGCCAGCCAGGTTCTCGAAACCGTTCGCCAGGTGCGACGCTTCGTCGAGCAGGGTTTGCGAAAGGCTGAAGATGTTGCCCGCGGCCTCTCGAACACGGAACAGTTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5687994‑5688147‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagttcgTTGCCGGTTCGGTGGATGAAATCCTCGAAACCTCGCCCGAACTGTTCCGTGTTCGAGAGGCCGCGGGCAACATCTTCAGCCTTTCGCAAACCCTGCTCGACGAAGCGTCGCACCTGGCGAACGGTTTCGAGAACCTGGCTGGCGGGC < NC_002947/5688184‑5688038 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |