| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5752802 | 66 (1.100) | 4 (0.070) | 4/252 | NT | 5.4% | coding (770/1407 nt) | glnA | glutamine synthetase |
| ? | NC_002947 | = 5752830 | 78 (1.360) | coding (798/1407 nt) | glnA | glutamine synthetase | |||||
AAGTTCACCACCACGAAGTGGCGACTGCCGGCCAGAACGAAATCGGCGTCAAGTTCAACACCCTGGTGAAGAAGGCTGACGAAGTACAGGCGCTGAAATACGTCGTGCACAACGTTGCCGACGCTTACGGCCGTACCGCCACCTTCATGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5752652‑5752802‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catgccCGAGCCGTTGTCGCCGTACAGTGGCTTCGGCATGAAGGTGGCGGTACGGCCGTAAGCGTCGGCAACGTTGTGCACGACGTATTTCAGCGCCTGTACTTCGTCAGCCTTCTTCACCAGGGTGTTGAACTTGACGCCGATTTCGTTCTGG < NC_002947/5752830‑5752683 AAGTTCACCACCACGAAGTGGCGACTGCCGGCCAGAACGAAATCGGCGTCAAGTTCAACACCCTGGTGAAGAAGGCTGACGAAGTACAGGCGCTGAAATACGTCGTGCACAACGTTGCCGACGCTTACGGCCGTACCGCCACCTTCATG < 4:126955/149‑1AAGTTCACCACCACGAAGTGGCGACTGCCGGCCAGAACGAAATCGGCGTCAAGTTCAACACCCTGGTGAAGAAGGCTGACGAAGTACAGGCGCTGAAATACGTCGTGCACAACGTTGCCGACGCTTACGGCCGTACCGCCACCTTCAT < 1:219028/148‑1AAGTTCACCACCACGAAGTGGCGACTGCCGGCCAGAACGAAATCGGCGTCAAGTTCAACACCCTGGTGAAGAAGGCTGACGAAGTACAGGCGCTGAAATACGTCGTGCACAACGTTGCCGACGCTTACGGCCGTACCGCCACCTTCAT < 7:295046/148‑1 GTTCACCACCACGAAGTGGCGACTGCCGGCCAGAACGAAATCGGCGTCAAGTTCAACACCCTGGTGAAGAAGGCTGACGAAGTACAGGCGCTGAAATACGTCGTGCACAACGTTGCCGACGCTTACGGCCGTACCGCCACCTTCATGCC > 5:310041/1‑149 GTTCACCACCACGAAGTGGCGACTGCCGGCCAGAACGAAATCGGCGTCAAGTTCAACACCCTGGTGAAGAAGGCTGACGAAGTACAGGCGCTGAAATACGTCGTGCACAACGTTGCCGACGCTTACGGCCGTACCGCCACCTTCATGCC < 6:190559/149‑1 AGAACGAAATCGGCGTCAAGTTCAACACCCTGGTGAAGAAGGCTGACGAAGTACAGGCGCTGAAATACGTCGTGCACAACGTTGCCGACGCTTACGGCCGTACCGCCACCTTCATGCCCGAGCCGTTGTCGCCGTACAGTGGCTTCGG > 2:50953/1‑148 AATCGGCGTCAAGTTCAACACCCTGGTGAAGAAGGCTGACGAAGTACAGGCGCTGAAATACGTCGTGCACAACGTTGCCGACGCTTACGGCCGTACCGCCACCTTCATGCCCGAGCCGTTGTCGCCGTACAGTGGCTTCGGCATGAAGG < 1:50953/149‑1 GCGTCAAGTTCAACACCCTGGTGAAGAAGGCTGACGAAGTACAGGCGCTGAAATACGTCGTGCACAACGTTGCCGACGCTTACGGCCGTACCGCCACCTTCATGCCCGAGCCGTTGTCGCCGTACAGTGGCTTCGGCATGAAG < 1:78640/143‑1 GCGTCAAGTTCAACACCCTGGTGAAGAAGGCTGACGAAGTACAGGCGCTGAAATACGTCGTGCACAACGTTGCCGACGCTTACGGCCGTACCGCCACCTTCATGCCCGAGCCGTTGTCGCCGTACAGTGGCTTCGGCATGAAG > 2:78640/1‑143 CATGCCCGAGCCGTTGTCGCCGTACAGTGGCTGCGGCATGAAGGTGGCGGTACGGCCGTAAGCGTCGGCAACGTTGTGCACGACGTATTTCAGCGCCTGTACTTCGTCAGCCTTCTTCACCAGGGTGTTGAACTTGACGCCGATTTCGT < 6:151516/149‑1 CCCGAGCCGTTGTCGCCGTACAGTGGCTTCGGCATGAAGGTGGCGGTACGGCC > 2:157355/1‑53 CCGAGCCGTTGTCGCCGTACAGTGGCTTCGGCATGAAGGTGGCGGTACGGCCTTAAGCGTCGGCAACGTTGTGCACGACGTATTTCAGCGCCTGTACTTCGTCAGCCTTCTTCACCAGGGTGTTGAACTTGACGCCGATTTCGTTCTGG < 4:196643/149‑1 AAGTTCACCACCACGAAGTGGCGACTGCCGGCCAGAACGAAATCGGCGTCAAGTTCAACACCCTGGTGAAGAAGGCTGACGAAGTACAGGCGCTGAAATACGTCGTGCACAACGTTGCCGACGCTTACGGCCGTACCGCCACCTTCATGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5752652‑5752802‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catgccCGAGCCGTTGTCGCCGTACAGTGGCTTCGGCATGAAGGTGGCGGTACGGCCGTAAGCGTCGGCAACGTTGTGCACGACGTATTTCAGCGCCTGTACTTCGTCAGCCTTCTTCACCAGGGTGTTGAACTTGACGCCGATTTCGTTCTGG < NC_002947/5752830‑5752683 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |