| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5898900 = | 68 (1.130) | 5 (0.090) | 4/256 | NT | 7.1% | coding (1988/3054 nt) | PP_5173 | RND family transporter |
| ? | NC_002947 | 5898920 = | 65 (1.110) | coding (1968/3054 nt) | PP_5173 | RND family transporter | |||||
CCCTTACTACGCGCAGCTGGTGATTGTCAGCAAGGGCTTCGAAGAGCGTCAGGCCATGATGGACCGCCTGCAGAAGATCCTGCATGAAGAATTCGTCGGCGTCGGCACCAACGTGCAATCGCTGGAGATGGGCCCGCCGGTGGGCCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5899049‑5898900‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccCATCTCCAGCGATTGCACGTTGGTGCCGACGCCGACGAATTCTTCATGCAGGATCTTCTGCAGGCGGTCCATCATGGCCTGACGCTCTTCGAAGCCCTTGCTGACAATCACCAGCTGCGCGTAGTAAGGGTTCTGCAACTGCTGATC > NC_002947/5898920‑5899066 CCCTTACTACGCGCAGCTGGTGATTGTCAGCAAGGGCTTCGAAGAGCGGCAGGCCATGATGGACCGCCTGCAGAAGATCCTGCATGAAGAATTCGTCGGCGTCGGCACCAACGTGCAATCGCTGGAGATGGGCCCGCCGGTGGGCCGGC < 2:188226/149‑1 CCTTACTACGCGCAGCTGGTGATTGTCAGCAAGGGCTTCGATGAGCGTCAGGCCATGATGGAGCGCCTGCAGAAGATCGGGAATGAAGACTTCGTCGGCGTCGGCACCACCGTGCAATCGCGGGAGATGGGCCCGCCGGTGGGCGGGCC > 6:34628/1‑149 CCTTACTACGCGCAGCTGGTGATTGTCAGCAAGGGCTTCGAAGAGCGTCAGGCCATGATGGACCGCCTGCAGAAGATCCTGCATGAAGAATTCGTCGGCGTCGGCACCAACGTGCAATCGCTGGAGATGGGCCCGCCGGTGGGCCGGCC > 2:78030/1‑149 CCTTACTACGCGCAGCTGGTGATTGTCAGCAAGGGCTTCGAAGAGCGTCAGGCCATGATGGACCGCCTGCAGAAGATCCTGCATGAAGAATTCGTCGGCGTCGGCACCAACGTGCAATCGCTGGAGATGGGCCCGCCGGTGGGCCGGCC > 8:98042/1‑149 GCAGCTGGTGATTGTCAGCAAGGGCTTCGAAGAGCGTCAGGCCATGATGGACCGCCTGCAGAAGATCCTGCATGAAGAATTCGTCGGCGTCGGCACCAACGTGCAATCGCTGGAGATGGGCCGGCCCACCGGCGGGCCCATCTCCAGCG < 4:81733/149‑1 TGGACCGCCTGCAGAAGATCCTGCATGAAGAATTCGTCGGCGTCGGCACCAACGTGCAATCGCTGGAGATGGGCCGGCCCACCGGCGGGCCCATCTCCAG > 5:195398/1‑100 TGGACCGCCTGCAGAAGATCCTGCATGAAGAATTCGTCGGCGTCGGCACCAACGTGCAATCGCTGGAGATGGGCCGGCCCACCGGCGGGCCCATCTCCAG < 6:195398/100‑1 TGCAGAAGATCCTGCATGAAGAATTCGTCGGCGTCGGCACCAACGTGCAATCGCTGGAGATGGGCCGGCCCACCGGCGGGCCCATCTCCAG < 7:21368/91‑1 TGCAGAAGATCCTGCATGAAGAATTCGTCGGCGTCGGCACCAACGTGCAATCGCTGGAGATGGGCCGGCCCACCGGCGGGCCCATCTCCAG > 8:21368/1‑91 GCCCATCTCCAGCGATTGCACGTTGGTGCCGACGCCGACGAATTCTTCATGCAGGATCTTCTGCAGGCGGTCCATCATGGCCTGACGCTCTTCGAAGCCCTTGCTGACAATCACCAGCTGCGCGTAGTAAGGGTTCTGCAACTGCTGAT < 7:46980/149‑1 CCCATCTCCAGCGATTGCACGTTGGTGCCGACGCCGACGAATTCTTCATGCAGGATCTTCTGCAGGCGGTCCATCATGGCCTGACGCTCTTCGAAGCCCTTGCTGACAATCACCAGCTGCGCGTAGTAAGGGTTCTGAAACTGCTGATC > 2:331418/1‑149 CCCTTACTACGCGCAGCTGGTGATTGTCAGCAAGGGCTTCGAAGAGCGTCAGGCCATGATGGACCGCCTGCAGAAGATCCTGCATGAAGAATTCGTCGGCGTCGGCACCAACGTGCAATCGCTGGAGATGGGCCCGCCGGTGGGCCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5899049‑5898900‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccCATCTCCAGCGATTGCACGTTGGTGCCGACGCCGACGAATTCTTCATGCAGGATCTTCTGCAGGCGGTCCATCATGGCCTGACGCTCTTCGAAGCCCTTGCTGACAATCACCAGCTGCGCGTAGTAAGGGTTCTGCAACTGCTGATC > NC_002947/5898920‑5899066 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |