New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6142721	56 (0.930)	3 (0.050)	3/248	NT	5.5%	coding (2457/3159 nt)	cusA	CzcA family RND family copper transporter
	?	NC_002947	= 6142749	50 (0.880)					coding (2485/3159 nt)	cusA	CzcA family RND family copper transporter

GCGTGCGCTACCCCCGTGAATGGCGCGATTCTGTCGACGCCTTGCGGCAGCTCCCGGTCTACACCGCACAAGGGGGCCAGATTACCCTCGGCACCGTGGCCCGCGTGGGAATTGCCGAAGGCCCGCCAATGCTCAAGAGCGAGAACGCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6142570‑6142721 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgcccgcGTACATCGATGTACACCCAGCCAGAGGGGCGGGCGTTCTCGCTCTTGAGCATTGGCGGGCCTTCGGCAATTCCCACGCGGGCCACGGTGCCGAGGGTAATCTGGCCCCCTTGTGCGGTGTAGACCGGGAGCTGCCGCAAGGCGTC  <  NC_002947/6142749‑6142605                                                                                                                                                                                                                                                                                                           GCGTGCGCTACCCCCGTGAATGGCGCGATTCTGTCGACGCCTTGCGGCAGCTCCCGGTCTACACCGCACAAGGGGGCCAGATTACCCTCGGCACCGTGGCCCGCGTGGGAATTGCCGAAGGCCCGCCAATGCTCAAGAGCGAGAACGCC                                                                                                                                                      >  4:132400/1‑149    TGCGCTACCCCCGTGAATGGCGCGATTCTGTCGACGCCTTGCGGCAGCTCCCGGTCTACACCGCACAAGGTGGCAAGATTACCCTCGGCACCGTGGCCCGCGTGGGAATTGCCGAAGGCCCGCCAATGCTCAAGAGCGAGAACGCCCGC                                                                                                                                                   <  5:284674/149‑1                         GCGATTCTGTCGACGCCTTGCGGCAGCTCCCGGTCTACACCGCACAAGGGGGCCAGATTACCCTCGGCACCGTGGCCCGCGTGGGAATTGCCGAAGGCCCGCCAATGCTCAAGAGCGAGAA                                                                                                                                                          >  7:168096/1‑121                         GCGATTCTGTCGACGCCTTGCGGCAGCTCCCGGTCTACACCGCACAAGGGGGCCAGATTACCCTCGGCACCGTGGCCCGCGTGGGAATTGCCGAAGGCCCGCCAATGCTCAAGAGCGAGAA                                                                                                                                                          <  8:168096/121‑1                                        CCTTGCGGCAGCTCCCGGTCTACACCGCACAAGGGGGCCAGATTACCCTCGGCACCGTGGCCCGCGTGGGAATTGCCGAAGGCCCGCCAATGCTCAAGAGCGAGAACGCCCGCGTACATCGATGTACACCCAGCCAGAGGGGCGGGCG                                                                                                                <  3:3128/148‑1                                        CCTTGCGGCAGCTCCCGGTCTACACCGCACAAGGGGGCCAGATTACCCTCGGCACCGTGGCCCGCGTGGGAATTGCCGAAGGCCCGCCAATGCTCAAGAGCGAGAACGCCCGCGTACATCGATGTACACCCAGCCAGAGGGGCGGGCG                                                                                                                >  4:3128/1‑148                                              GGCAGCTCCCGGTCTACACCGCACAAGGGGGCCAGATTACCCTCGGCACCGTGGCCCGCGTGGGAATTGCCGAAGGCCCGCCAATGCTCAAGAGCGAGAACGCCCGCGTACATCGATGTACACCCAGCCAGAGGGGCGGGCGTTCTCGC                                                                                                         <  1:163696/149‑1                                                                                                                                                 ACGCCCGCGTACATCGATGTACACCCAGCCAGAGGGGCGGGCGTTCTCGCTCTTGAGCATTGGCGGGCCTTCGGCAATTCCCACGCGGGCCACGGTGCCGAGGGTAATCTGGCCCCCTTGTGCGGTGTAGACCGGGAGCTGCCGCAAG       <  3:3870/148‑1                                                                                                                                                 ACGCCCGCGTACATCGATGTACACCCAGCCAGAGGGGCGGGCGTTCTCGCTCTTGAGCATTGGCGGGCCTTCGGCAATTCCCACGCGGGCCACGGTGCCGAGGGTAATCTGGCCCCCTTGTGCGGTGTAGACCGGGAGCTGCCGCAAG       <  7:169989/148‑1                                                                                                                                                   GCCCGCGTACATCGATGTACACCCAGCCAGAGGGGCGGGCGTTCTCGCTCTTGAGCATTGGCGGGCCTTCGGCAATTCCCACGCGGGCCACGGTGCCGAGGGTAATCTGGCCCCCTTGTGCGGTGTAGACCGGGAGCTGCCGCAAGGCG    >  8:328620/1‑149                                                                                                                                                   GCCCGCGTACATCGATGTACACCCAGCCAGAGGGGCGGGCGTTCTCGCTCTTAAGCATTGGCGGGCCTTCGGCAATTCCCACGCGGGCCACGGTGCCGAGGGTAATCTGGCCCCCTTGTGCGGTGTAGACCGGGAGCTGCCGCAAGGCG    >  4:197195/1‑149                                                                                                                                                    CCCGAGTACATCGATGTACACCCAGCCTGAGGGGCGGGCGTTCTCGCTCTTGAGCATTGGCGGGCCTTCGCCAATTCCCACGCGGGCCACGGTGCCGAGGGTAATCTGGCCCCCTTGTGCGGTGTAGACCGGGAGCTGCCGCAAGGCGT   <  3:45134/149‑1                                                                                                                                                     CCGCGTACATCGATGTACACCCAGCCAGAGGGGCGGGCGTTCTCGCTCTTGAGCATTGGCGGGCCTTCGGCAATTCCCACGCGGGCCACGGTGCCGAGGGTAATCTGGCCCCCTTGTGCGGTGTAGACCGGGAGCTGCCGCAAGGCGTC  >  6:250655/1‑149                                                                                                                                                       GCGTACATCGATGTACACCCAGCCAGAGGGGCGGGCGTTCTCGCTCTTGAGCATTGGCGGGCCTTCGGCAATTCCCACGCGGGCCACGGTGCCGAGGGTAATCTGGCCCCCTTGTGCGGTG                            >  5:353543/1‑121                                                                                                                                                       GCGTACATCGATGTACACCCAGCCAGAGGGGCGGGCGTTCTCGCTCTTGAGCATTGGCGGGCCTTCGGCAATTCCCACGCGGGCCACGGTGCCGAGGGTAATCTGGCCCCCTTGTGCGGTG                            <  6:353543/121‑1                                                                                                                                                                                                                                                                                                           GCGTGCGCTACCCCCGTGAATGGCGCGATTCTGTCGACGCCTTGCGGCAGCTCCCGGTCTACACCGCACAAGGGGGCCAGATTACCCTCGGCACCGTGGCCCGCGTGGGAATTGCCGAAGGCCCGCCAATGCTCAAGAGCGAGAACGCCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6142570‑6142721 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgcccgcGTACATCGATGTACACCCAGCCAGAGGGGCGGGCGTTCTCGCTCTTGAGCATTGGCGGGCCTTCGGCAATTCCCACGCGGGCCACGGTGCCGAGGGTAATCTGGCCCCCTTGTGCGGTGTAGACCGGGAGCTGCCGCAAGGCGTC  <  NC_002947/6142749‑6142605

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.