New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1258881 =	44 (0.730)	4 (0.070)	4/254	NT	7.8%	coding (123/651 nt)	PP_1102	hypothetical protein
	?	NC_002947	1258918 =	52 (0.900)					coding (86/651 nt)	PP_1102	hypothetical protein

TTGCCGGGGCGCGGGCCGTGCGGGCATGCAGAAAGTCGCCCAGGATGATCAGTTGTTCGCAGTCATGCTCGGCCAGCAGGCGATCGAGCCTGGCGAGTGTCGCCTCAGTCGTTCCGCGT‑GGCACCGGTTGATGCAGGGCGCGGTAGCTGGCGGCCTTTCCGATGTGCACGTCGGCCACCAGCAAGGCGCGGCGGGCGGGCCAGTAGATGGCTTTGTCGGCAAGCAGCCAGAGCGCCTGCCCCCGGTGTTCGATGGGTTGGTAATTCATCCCGCGTTCGCCGCTTGTTCCAGTTC  >  NC_002947/1258736‑1259029                                                                                                                                                   |                                                                                                                                                     ttGCCGGGGCGCGGGCCGTGCGGGCATGCAGAAAGTCGCCCAGGATGATCAGTTGTTCGCAGTCATGCTCGGCCAGCAGGCGATCGAGCCTGGCGAGTGTCGCCTCAGTCGTTCCGCGT‑GGCACCGGTTGATGCAGGGCGCGGTAGCTg                                                                                                                                                   <  7:116120/149‑1 (MQ=255)   agctggcagaccgcattgcgcggatggtggcggaactggaacaagcggcgaacgcgggatgaattaccaacccatcgaacaccgggggcaggcgctctggctgcttgccgacaaagccatctactggcccgcccgccgcgccttGCTgg                                                                                                                                                  >  4:365315‑M1/145‑149 (MQ=255)    ccGGGGCGCGGGCCGTGCGGGCATGCAGAAAGTCGCCCAGGATGATCAGTTGTTCGCAGTCATGCTCGGCCAGCAGGCGATCGAGCCTGGCGAGTGTCGCCTCAGTCGTTCCGCGT‑GGCACCGGTTGATGCAGGGCGCGGTAGCTggcg                                                                                                                                                <  6:212841/149‑1 (MQ=255)      ggggCGCGGGCCGTGCGGGCATGCAGAAAGTCGCCCAGGATGATCAGTTGTTCGCAGTCATGCTCGGCCAGCAGGCGATCGAGCCTGGCGAGTGTCGCCTCAGTCGTTCCGCGT‑GGCACCGGTTGATGCAGGGCGCGGTAGCTggcggc                                                                                                                                              <  4:271531/149‑1 (MQ=255)                ccGTGCGGGCATGCAGAAAGTCGCCCAGGATGATCAGTTGTTCGCAGTCATGCTCGGCCAGCAGGCGATCGAGCCTGGCGAGTGTCGCCTCAGTCGTTCCGCGT‑GGCACCGGTTGATGCAGGGCGCGGTAGCTGGCGGCCTTTCCGAtg                                                                                                                                    <  6:73558/149‑1 (MQ=255)                   tGCGGGCATGCAGAAAGTCGCCCAGGATGATCAGTTGTTCGCAGTCATGCTCGGCCAGCAGGCGATCGAGCCTGGCGAGTGTCGCCTCAGTCGTTCCGCGTCGGCACCGGTTGATGCAGGGCGCGGTAGCTGGCGGCCTTTCCGAtgtg                                                                                                                                  <  1:273319/149‑1 (MQ=255)                       ggCATGCAGAAAGTCGCCCAGGATGATCAGTTGTTCGCAGTCATGCTCGGCCAGCAGGCGATCGAGCCTGGCGAGTGTCGCCTCAGTCGTTCCGCGT‑GGCACCGGTTGATGCAGGGCGCGGTAGCTGGCGGCCTTTCCGATGTGCACGt                                                                                                                             >  6:340799/1‑149 (MQ=255)                         cATGCAGAAAGTCGCCCAGGATGATCAGTTGTTCGCAGTCATGCGCGGCCAGCAGGCGATCGAGCCTGGCGAGTGTCGCCTCAGTCGTTCCGCGT‑GGCACCGGTTGATGCAGGGCGCGGTAGCTGGCGGCCTTTCCGATGTGCACGTCg                                                                                                                           <  8:332017/149‑1 (MQ=255)                             cAGAAAGTCGCCCAGGATGATCAGTTGTTCGCAGTCATGCTCGGCCAACAGGCGATCGAGCCTGGCGAGTGTCGCCTCAGTCGTTCCGCGT‑GGCACCGGTTGATGCAGGGCGCGGTAGCTGGCGGCCTTTCCGATGTGCACGTCGGcca                                                                                                                       >  2:85730/1‑149 (MQ=255)                              aGAAAGTCGCCCAGGATGATTAGTTGTTCGCAGTCATGCTCGGCCAGCAGGCGATCGAGCCTGGCGAGTGTCGCCTCAGTCGTTCCGCGT‑GGCACCGGTTGATGCAGGGCGCGGTAGCTGGCGGCCTTTCCGATGTGCACGTCGGccac                                                                                                                      >  4:151848/1‑149 (MQ=255)                              aGAAAGTCGCCCAGGATGATCAGTTGTTCGCAGTCATGCTCGGCCAACAGGCGATCGAGCCTGGCGAGTGTCGCCTCAGTCGTTCCGCGT‑GGCACCGGTTGATGCAGGGCGCGGTAGCTGGCGGCCTTTCCGATGTGCACGTCGGccac                                                                                                                      <  1:85730/149‑1 (MQ=255)                                  ggaactggaacaagcggcgaacgcgggatgaattaccaacccatcgaacaccgggggcaggcgctctggctgcttgccgacaaagccatctactggcccgcccgccgcgccttg                                                                                                                                                      <  6:314337‑M1/1‑1 (MQ=255)                                  ggaactggaacaagcggcgaacgcgggatgaattaccaacccatcgaacaccgggggcaggcgctctggctgcttgccgacaaagccatctactggcccgcccgccgcgccttg                                                                                                                                                      >  5:314337‑M1/114‑114 (MQ=255)                                      ctggaacaagcggcgaacgcgggatgaattaccaacccatcgaacaccgggggcaggcgctctggctgcttgccgacaaagccatctactggcccgcccgccgcgcctaGCTGGCGGCCTTTCCGATGTGCACGTCGGCCACCAGCAAg                                                                                                               >  6:325708‑M1/110‑149 (MQ=255)                                        ccAGGATGATCAGTTGTTCGCAGTCATGCTCGGCCAGCAGGCGATCGAGCCTGGCGAGTGTCGCCTCAGTCGTTCCGCGT‑GGCACCGGTTGATGCAGGGCGCGGTAGCTGGCGGCCTTTCCGATGTGCACGTCGGCCACCAGCAAGgcg                                                                                                            >  2:17258/1‑149 (MQ=255)                                        ccAGGATGATCAGTTGTTCGCAGTCATGCTCGGCCAGCAGGCGATCGAGCCTGGCGAGTGTCGCCTCAGTCGTTCCGCGT‑GGCACCGGTTGATGCAGGGCGCGGTAGCTGGCGGCCTTTCCGATGTGCACGTCGGCCACCAGCAAGgcg                                                                                                            >  2:298270/1‑149 (MQ=255)                                         gaacaagcggcgaacgcgggaggaattaccaacccatcgaacaccgggggcaggcgctctggctgcttgccgacaaagccatctactggcccgcccgccgcgccttGCTGGCGGCCTTTCCGATGTGCACGTCGGCCACCAGCAAGgc                                                                                                             >  2:12545‑M1/107‑148 (MQ=255)                                                atCAGTTGTTCGCAGTCATGCTCGGCCAGCAGGCGATCGAGCCTGGCGAGTGTCGCCTCAGTCGTTCCGCGT‑GGCACCGGTTGATGCAGGGCGCGGTAGCTGGCGGCCTTTCCGATGTGCACGTCGGCCACCAGCAAGGCgcgg                                                                                                         >  7:116274/1‑144 (MQ=255)                                                atCAGTTGTTCGCAGTCATGCTCGGCCAGCAGGCGATCGAGCCTGGCGAGTGTCGCCTCAGTCGTTCCGCGT‑GGCACCGGTTGATGCAGGGCGCGGTAGCTGGCGGCCTTTCCGATGTGCACGTCGGCCACCAGCAAGGCgcgg                                                                                                         <  8:116274/144‑1 (MQ=255)                                                atCAGTTGTTCGCAGTCATGCTCGGCCAGCAGGCGATCGAGCCTGGCGAGTGTCGCCTCAGTCGTTCCGCGT‑GGCACCGGTTGATGCAGGGCGAGGTAGCTGGCGGCCTTTCCGATGTGCACGTCGGCCACCAGCAAGGCGCggcgggc                                                                                                    >  5:17048/1‑149 (MQ=255)                                                 tCAGTTGTTCGCAGTCATGCTCGGCCAGCAGGCGATCGAGCCTGGCGAGTGTCGCCTCAGTCGTTCCGCGT‑GGCACCGGTTGATGCAGGGCGCGGTAGCTGGCGGCCTTTCCGATGTGCACGTCGGCCACCAGCAAGGCGCggcgggcg                                                                                                   >  1:340793/1‑149 (MQ=255)                                                   aGTTGTTCGCAGTCATGCTCGGCCAGCAGGGGATCGAGCCTGGCGAGTGTCGCCTCAGTCGTTCCGCGT‑GGCACCGGTTGATGCAGGGCGCGGTAGCTGGCGGCCTTTCCGATGTGCACGTCGGCCACCAGCAAGGCGCGGcgggcggg                                                                                                 >  1:32929/1‑149 (MQ=255)                                                    ggtgttCGCAGTCATGCTCGGCCAGCAGGCGATCGAGCCTGGCGAGTGTCGCCTCAGTCGTTCCGCGT‑GGCACCGGTTGATGCAGGGCGCGGTAGCTGGCGGCCTTTCCGATGTGCACGTCGGCCACCAGCAAGGCGCGGCgggcgggc                                                                                                <  8:10351/147‑1 (MQ=255)                                                            cAGACATGATCGGCCAGCAGGCGATCGAGCCTCGAGAGTGTCGACTCAGTCGTTCCGCGT‑GGCACCGCATGATGCAGGGCGCGGTAGCTGGCGGCCATTCCGATCTGCACGTCGGCCACCAGCAAGTCCCGGCGGCCGTGCCAGAAGAt                                                                                        >  8:212984/1‑149 (MQ=255)                                                             aGTCATGCTCGGCCAGCAGGCGATCGAGCCTGGCGAGTGTCGCCTCAGTCGTTCCGCGT‑GGCACCGGTTGATGCAGGGCGCGGTAGCTGGCGGCCTTTCCGATGTGCACGTCGGCCACCAGCAAGGCGCGGCGGGCGGGCCAGTAGATg                                                                                       >  3:260291/1‑149 (MQ=255)                                                                 aTGCTCGGCCAGCAGGCGATCGAGCCTGGCGAGTGTCGCCTCAGTCGTTCCGCGT‑GGCACCGGTTGATGCAGGGCGCGGTAGCTGGCGGCCTTTCCGATGTGCACGTCGGCCACCAGCAAGGCGCGGCGGGCGGGCCAGTAGATGGCt                                                                                    <  2:132644/148‑1 (MQ=255)                                                                  tGCTCGGCCAGCAGGCGATCGAGCCTGGCGAGTGTCGCCTCAGTCGTTCCGCGT‑GGCACCGGTTGATGCAGGGCGCGGTAGCTGGCGGCCTTTCCGATGTGCACGTCGGCCACCAGCAAGGCGCGGCGGGCGGGCCAGTAGATGGCttt                                                                                  >  4:155976/1‑149 (MQ=255)                                                                  tGCTCGGCCAGCAGGCGATCGAGCCTGGCGAGTGTCGCCTCAGTCGTTCCGCGT‑GGCACCGGTTGATGCAGGGCGCGGTAGCTGGCGGCCTTTCCGATGTGCACGTCGGCCACCAGCAAGGCGCGGCGGGCGGGCCAGTAGATGGCttt                                                                                  >  5:118300/1‑149 (MQ=255)                                                                     tCGGCCAGCAGGCGATCGAGCCTGGCGAGTGTCGCCTCAGTCGTTCCGCGT‑GGCACCGGTTGATGCAGGGCGCGGTAGCTGGCGGCCTTTCCGATGTGCACGTCGGCCACCAGCAAGGCGCGGCGGGCGGGCCAGTAGATGGCTTTGTc                                                                               <  8:257157/149‑1 (MQ=255)                                                                     tCGGCCAGCAGGCGATCGAGCCTGGCGAGTGTCGCCTCAGTCGTTCCGCGT‑GGCACCGGTTGATGCAGGGCGCGGTAGCTGGCGGCCTTTCCGATGTGCACGTCGGCCACCAGCAAGGCGCGGCGGGCGGGCCAGTAGATGGCTTTGTc                                                                               >  2:271506/1‑149 (MQ=255)                                                                             tcgaacaccgggggcaggcgctctggctgcttgccgacaaagccatctactggcccgcccgccgcgccttGCTGGCGGCCTTTCCGATGTGCACGTCGGccacca                                                                                                                    >  5:376316‑M1/71‑105 (MQ=255)                                                                             tcgaacaccgggggcaggcgctctggctgcttgccgacaaagccatctactggcccgcccgccgcgccttGCTGGCGGCCTTTCCGATGTGCACGTCGGccacca                                                                                                                    <  6:376316‑M1/35‑1 (MQ=255)                                                                              agGCGATCGAGCCTGGCGAGTGTCGCCTCAGTCGTTCCGCGT‑GGCACCGGTTGATGCAGGGCGCGGTAGCTGGCGGCCTTTCCGATGTGCACGTCGGCCACCAGCAAGGCGCGGCgggcgggc                                                                                                <  3:312452/123‑1 (MQ=255)                                                                              agGCGATCGAGCCTGGCGAGTGTCGCCTCAGTCGTTCCGCGT‑GGCACCGGTTGATGCAGGGCGCGGTAGCTGGCGGCCTTTCCGATGTGCACGTCGGCCACCAGCAAGGCGCGGCgggcgggc                                                                                                >  4:312452/1‑123 (MQ=255)                                                                                         ccTGGCGAGTGTCGCCTCAGTCGTTCCGCGT‑GGCACCGGTTGATGCAGGGCGCGGTAGCTGGCGGCCTTTCCGATGTGCACGTCGGCCACCAGCAAGGCGCGGCGGGCGGGCCAGTAGATGGCTTTGTCGGCAAGCAGCCAGAGCGCCt                                                           <  8:60513/149‑1 (MQ=255)                                                                                             gCGAGTGTCGCCTCAGTCGTTCCGCGT‑GGCACCGGTTGATGCAGGGCGCGGTAGCTGGCGGCCTTTCCGATGTGCACGTCGGCCACCAGCAAGGCGCGGCGGGCGGGCCAGTAGATGGCTTTGTCGGCAAGCAGCCAGAGCGCCTGccc                                                       >  5:301615/1‑149 (MQ=255)                                                                                                      gCCTCAGTCGTTCCGCGT‑GGCACCGGTTGATGCAGGGCGCGGTAGCTGGCGGCCTTTCCGATGTGCACGTCGGCCACCAGCAAGGCGCGGCGGGCGGGCCAGTAGATGGCTTTGTCGGCAAGCAGCCAGAGCGCCTGCCCCCGGTGTTc                                              <  7:354819/149‑1 (MQ=255)                                                                                                         tCAGTCGTTCCGCGT‑GGCACCGGTTGATGCAGGGCGCGGTAGCTGGCGGCCTTTCCGATGTGCACGTCGGCCACCAGCAAGGCGCGGCGGGCGGGCCAGTAGATGGCTTTGTCGGCAAGCAGCCAGAGCGCCTGCCCCCGGTGTTCGAt                                           >  1:40914/1‑149 (MQ=255)                                                                                                         tCAGTCGTTCCGCGT‑GGCACCGGTTGATGCAGGGCGCGGTAGCTGGCGGCCTTTCCGATGTGCACGTCGGCCACCAGCAAGGCGCGGCGGGCGGGCCAGTAGATGGCTTTGTCGGCAAGCAGCCAGAGCGCCTGCCCCCGGTGTTCGAt                                           >  4:42731/1‑149 (MQ=255)                                                                                                            gTCGTTCCGCGT‑GGCACCGGTTGATGCAGGGCGCGGTAGCTGGCGGCCTTTCCGATGTGCACGTCGGCCACCAGCAAGGCGCGGCGGGCGGGCCAGTAGATGGCTTTGTCGGCAAGCAGCCAGAGCGCCTGCCCCCGGTGTTCGATggg                                        >  5:37200/1‑149 (MQ=255)                                                                                                             tCGTTCCGCGT‑GTCACCGGTTGATTCAGGGTGCGGTAGCTGGCGGCCTTTCCGATTTGCACGTCGGCCACCAGCAAGGCGCGGGGGGGGGGCCAGTATATGGCTTTGTCGGCAAGCAGCCAGAGCGCCTG‑CCCCGGTGTTCGATGGGt                                       <  2:340793/148‑1 (MQ=255)                                                                                                             tCGTTCCGCGT‑GGCACCGGTTGATGCAGGGCGCGGTAGCTGGCGGCCTTTCCGATGTGCACGTCGGCCACCAGCAAGGCGCGGCGGGCGGGCCAGTAGATGGCTTTGTCGGCAAGCAGCCAGAGCGCCTGCCCCCGGTGTTCGATGGGt                                       >  1:49128/1‑149 (MQ=255)                                                                                                               gTTCCGCGT‑GGCACCGGTTGATGCAGGGCGCGGTAGCTGGCGGCCTTTCCGTTGTGCACGTCGGCCACCAGCAAGGCGCGGCGGGCGGGCCAGTAGATGGCTTTGTCGGCAAGCAGCCAGAGCGCCTGCCCCCGGTGTTCGATGGGTTg                                     <  3:253923/149‑1 (MQ=255)                                                                                                                    gggT‑GGCACCGGTTGATGCTGGGCGGGGTAGCTGGCGGCTTTTCGTATGTGCAGGTCGGCCACCAGCAAGGCGCGGCGGGCGGGCCTGTTGATGGCTTTGTCGGCAAGCAGCCAGAGCGCCTGCCCCCGGTGTTCGATGGGTTGGTAAt                                <  1:298270/147‑1 (MQ=255)                                                                                                                    gcgT‑GGCACCGGTTGATGCAGGGCGCGGTAGCTGGCGGCCTTTCCGATGTGCACGTCGGCCACCAGCAAGGCGCGGCGGGCGGGCCAGTAGATGGCTTTGTCGGCAAGCAGCCAGAGCGCCTGCCCCCGGTGTTCGATGGGTTGGTAAt                                >  8:312877/1‑149 (MQ=255)                                                                                                                                gTTGATGCAGGGCGCGGTAGCTGGCGGCCTTTCCGATGTGCACGTCGGCCACCAGCAAGGCGCGGCGGGCGGGCCAGTAGATGGCTTTGTCGGCAAGCAGCCAGAGCGCCTGCCCCCGGTGTTCGATGGGTTGGTAATTCATCCCGCGt                     >  6:3840/1‑149 (MQ=255)                                                                                                                                     tGCAGGGCGCGGTAGCTGGCGGCCTTTCCGATGTGCACGTCGGCCACCAGCAAGGCGCGGCGGGCGGGCCAGTAGATGGCTTTGTCGGCAAGCAGCCAGAGCGCCTGCCCCCGGTGTTCGATGGGTTGGTAATTCATCCCGCGTTcgcc                <  3:42731/149‑1 (MQ=255)                                                                                                                                       cAGGGCGCGGTAGCTGGCGGCCTTTCCGATGTGCACGTCGGCCACCAGCAAGGCGCGGCGGGCGGGCCAGTAGATGGCTTTGTCGGCAAGCAGCCAGAGCGCCTGCCCCCGGTGTTCGATGGGTTGGTAATTCATCCCGCGTTcgccgc              >  2:145390/1‑149 (MQ=255)                                                                                                                                       cAGGGCGCGGTAGCTGGCGGCCTTTCCGATGTGCACGTCGGCCACCAGCAAGGCGCGGCGGGCGGGCCAGTAGATGGCTTTGTCGGCAAGCAGCCAGAGCGCCTGCCCCCGGTGTTCGATGGGTTGGTAATTCATCCCGCGTTcgccg               <  3:151848/148‑1 (MQ=255)                                                                                                                                        aGGGCGCGGTAGCTGGCGGCCTTTCCGATGTGCACGTCGGCCACCAGCAAGGCGCGGCGGGCGGGCCAGTAGATGGCTTTGTCGGCAAGCAGCCAGAGCGCCTGCCCCCGGTGTTCGATGGGTTGGTAATTCATCCCGCGTTCGCCGCt             <  4:260291/149‑1 (MQ=255)                                                                                                                                         gggCGCGGTAGCTGGCGGCCTTTCCGATGTGCACGTCGGCCACCAGCAAGGCGCGGCGGGCGGGCCAGTAGATGGCTTTGTCGGCAAGCAGCCAGAGCGCCTGCCCCCg                                                    >  6:150852/1‑109 (MQ=255)                                                                                                                                         gggCGCGGTAGCTGGCGGCCTTTCCGATGTGCACGTCGGCCACCAGCAAGGCGCGGCGGGCGGGCCAGTAGATGGCTTTGTCGGCAAGCAGCCAGAGCGCCTGCCCCCg                                                    <  5:150852/109‑1 (MQ=255)                                                                                                                                              cgGTAGCTGGCGGCCTTTCCGATGTGCACGTCGGCCACCAGCAAGGCGCGGCGGGCGGGCCAGTAGATGGCTTTGTCGGCAAGCAGCCAGAGCGCCTGCCCCCGGTGTTCGATGGGTTGGTAATTCATCCCGCGTTCGCCGCTTGTTcc       <  7:312877/149‑1 (MQ=255)                                                                                                                                               ggTAGCTGGCGGCCTTTCCGATGTGCACGTCGGCCACCAGCAAGGCGCGGCGGGCGGGCCAGTAGATGGCTTTGTCGGCAAGCAGCCAGAGCGCCTGCCCCCGGTGTTCGATGGGTTGGTAATTCATCCCGCGTTCGCCGCTTGTTCCa      >  8:322344/1‑149 (MQ=255)                                                                                                                                                   GCTGGCGGCCTTTCCGATGTGCACGTCGGCCACCAGCAAGGCGCGGCGGGCGGGCCAGTAGATGGCTTTGTCGGCAAGCAGCCAGAGCGCCTGCCCCCGGTGTTCGATGGGTTGGTAATTCATCCCGCGTTCGCCGCTTGTTCCAGTTc  >  6:301615‑M1/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                     TTGCCGGGGCGCGGGCCGTGCGGGCATGCAGAAAGTCGCCCAGGATGATCAGTTGTTCGCAGTCATGCTCGGCCAGCAGGCGATCGAGCCTGGCGAGTGTCGCCTCAGTCGTTCCGCGT‑GGCACCGGTTGATGCAGGGCGCGGTAGCTGGCGGCCTTTCCGATGTGCACGTCGGCCACCAGCAAGGCGCGGCGGGCGGGCCAGTAGATGGCTTTGTCGGCAAGCAGCCAGAGCGCCTGCCCCCGGTGTTCGATGGGTTGGTAATTCATCCCGCGTTCGCCGCTTGTTCCAGTTC  >  NC_002947/1258736‑1259029

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.