New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2092875 =	37 (0.610)	6 (0.100)	5/256	NT	11.9%	coding (365/795 nt)	ygiD	4,5‑DOPA‑dioxygenase
	?	NC_002947	2092987 =	53 (0.910)					coding (253/795 nt)	ygiD	4,5‑DOPA‑dioxygenase

GCTGCCCGAACCTATTAGCAGTACATCCTCGGCACGCAACCCCGCCAGTGCCTGGCCCACCTTCAGCTGCAGCGCCGGCCCCATGTGACTGGGCAGGGAAACCTGCACCACGGGAATGCGCGCATCCGGGTACATCAGCGACAGCGGCACCCAGGCGCCATGGTCGAATGGGCGTTGCATGTCCAGCCGCGCGGGTAACCCCGCAGCCTTCAACCGCTCACTGACCTGGCCA‑‑GCAAGCCCGGGCTCGCCCGGCGCCGGGTACTGCACCGCATACAGGGCTGGTGGGAAGCCGTAG  >  NC_002947/2092727‑2093021                                                                                                                                                     |                                                                                                                                                     gggttggccaacgcgctgccccggccgaaagcgatcgtggtggtgtcggcacactgggaaagccgcgagctgctggtcaccggcagcgcacagcccgaaacctggcatgacttctacggcttcccaccagccctgtatgcggtgcagta                                                                                                                                                      >  1:184451‑M1/149‑149 (MQ=255)  ctgcCCGAACCTATTAGCAGTACATCCTCGGCACGCAACCCCGCCAGTGCCTGGCCCACCTTCAGCTGCAGCGCCGGCCCCATGTGACTGGGCAGGGAAACCTGCACCAC‑GGAATGCGCGCATCCGGGGACATCAGCGACAGCCGcccc                                                                                                                                                    >  6:207015/1‑149 (MQ=255)                  gCAGTACATCCTCGGCACGCAACCCCGCCAGTGCCTGGCCCACCTTCAGCTGCAGCGCCGGCCCCATGTGACTGGGCAGGGAAACCTGCACCACGGGAATGCGCGCATCCGGGTACATCAGCGACAGCGGCACCCAGGCGCCATGGTc                                                                                                                                      >  5:152856/1‑148 (MQ=255)                     gTACATCCTCGGCACGCAACCCCGCCAGTGCCTGGCCCACCTTCAGCTGCAGCGCCGGCCCCATGTGACTGGGCAGGGAAACCTGCACCACGGGAATGCGCGCATCCGGGTACATCAGCGACAGCGGCACCCAGGCGCCATGGTCGAAt                                                                                                                                  <  6:152856/149‑1 (MQ=255)                                gCACGCAACCCCGCCAGTGCCTGGCCCACCTTCAGCTGCAGCGCCGGCCCCATGTGACTGGGCAGGGAAACCTGCACCACGGGAATGCGCGCATCCGGGTACATCAGCGACAGCGGCACCCAGGCGCCATGGTCGAATGGGCGTTGCAt                                                                                                                       <  7:229352/149‑1 (MQ=255)                                      aaCCCCGCCAGTGCCTGGCCCACCTTCAGCTGCAGCGCCGGCCCCATGTGACTGGGCAGGGAAACCTGCACCACGGGAATGCGCGCATCCGGGTACATCAGCGACAGCGGCACCCAGGCGCCATGGTCGAATGGGCGTTGCATGTCCAg                                                                                                                 >  4:47595/1‑149 (MQ=255)                                          ccGCCAGTGCCTGGCCCACCTTCAGCTGCAGCGCCGGCCCCATGTGACTGGGCAGGGAAACCTGCACCACGGGAATGCGCGCATCCGGGTACATCAGCGACAGCGGCACCCAGGCGCCATGGTCGAAt                                                                                                                                  <  5:265154/128‑1 (MQ=255)                                          ccGCCAGTGCCTGGCCCACCTTCAGCTGCAGCGCCGGCCCCATGTGACTGGGCAGGGAAACCTGCACCACGGGAATGCGCGCATCCGGGTACATCAGCGACAGCGGCACCCAGGCGCCATGGTCGAAt                                                                                                                                  >  6:265154/1‑128 (MQ=255)                                          ccGCCAGTGCCTGGCCCACCTTCAGCTGCAGCGCCGGCCCCATGTGACTGGGCAGGGAAACCTGCACCACGGGAATGCGCGCATCCGGGTACATCAGCGACAGCGGCACCCAGGCGCCATGGTCGAATGGGCGTTGCATGTCCAGCcgc                                                                                                             >  5:17539/1‑149 (MQ=255)                                            gCCAGTGCCTGGCCCACCTTCAGCTGCAGCGCCGGCCCCATGTGACTGGGCAGGGAAACCTGCACCACGGGAATGCGCGCATCCGGGTACATCAGCGACAGCGGCACCCAGGCGCCATGGTCGAATGGGCGTTGCATGTCCAGCcgcgc                                                                                                           <  8:58793/149‑1 (MQ=255)                                              cAGTGCCTGGCCCACCTTCAGCTGCAGCGCCGGCCCCATGTGACTGGGCAGGGAAACCTGCACCACGGGAATGCGCGCATCCGGGTACATCAGCGACAGCGGCACCCAGGCGCCATGGTCGAATGGGCGTTGCATGTCCAGCCGCGCgg                                                                                                         <  1:40868/149‑1 (MQ=255)                                               aGTGCCTGGCCCACCTTCAGCTGCAGCGCCGGCCCCATGTGACTGGGCAGGGAAACCTGCACCACGGGAATGCGCGCATCCGGGTACATCAGCGACAGCGGCACCCAGGCGCCATGGTCGAATGGGCGTTGCATGTCCAGCCGCGCggg                                                                                                        <  3:47595/149‑1 (MQ=255)                                                gTGCCTGGCCCACCTTCAGCTGCAGCGCCGGCCCCATGTGACTGGGCAGGGAAACCTGCACCACGGGAATGCGCGCATCCGGGTACATCAGCGACAGCGGCACCCAGGCGCCATGGTCGAATGGGCGTTGCATGTCCAGCCGCGCGGGt                                                                                                       <  3:121767/149‑1 (MQ=255)                                                     tGGCCCACCTTCAGCTGCAGCGCCGGCCCCATGTGACTGGGCAGGGAAACCTGCACCACGCGAATGCGCGCATCCGGGTACATCAGCGACAGCGGCACCCAGGCGCCATGGTCGAATGGGCCTTGCCTGACCAGCCGCGCGCGTAAccc                                                                                                  >  2:99578/1‑149 (MQ=255)                                                       gCCCACCTTCAGCTGCAGCGCCGGCCCCATGTGACTGGGCAGGGAAACCTGCACCACGGGAATGCGCGCATCCGGGTACATCAGCGACAGCGGCACCCAGGCGCCATGGTCGAATGGGCGTTGCATGTCCAGCCGCGCGGGTAACCCCg                                                                                                >  1:216165/1‑149 (MQ=255)                                                             cTTCAGCTGCAGCGCCGGCCCCATGTGACTGGGCAGGGAAACCTGCACCACGGGAATGCGCGCATCCGGGTACATCAGCGACAGCGGCACCCAGGCGCCATGGTCGAATGGGCGTTGc                                                                                                                         >  7:167153/1‑118 (MQ=255)                                                             cTTCAGCTGCAGCGCCGGCCCCATGTGACTGGGCAGGGAAACCTGCACCACGGGAATGCGCGCATCCGGGTACATCAGCGACAGCGGCACCCAGGCGCCATGGTCGAATGGGCGTTGc                                                                                                                         <  8:167153/118‑1 (MQ=255)                                                              ttCAGCTGCAGCGCCGGCCCCATGTGACTGGGCAGGGAAACCTGCACCACGGGAATGCGCGCATCCGGGTACATCAGCGACAGCGGCACCCAGGCGCCATGGTCGAATGGGCGTTGCATGTCCAGCCGCGCGGGTAACCCCGCAGCCtt                                                                                         >  6:248523/1‑149 (MQ=255)                                                                cAGCTGCAGCGCCGGCCCCATGTGACTGGGCAGGGAAACCTGCACCACGGGAATGCGCGCATCCGGGTACATCAGCGACAGCGGCACCCAGGCGCCATGGTCGAATGGGCGTTGCATGTCCAGCCGCGCGGGTAACCCCGCAGCCtt                                                                                         <  2:216165/147‑1 (MQ=255)                                                                       aGCGCCGGCCCCATGTGACTGGGCAGGGAAAACTGCACCACGGGAATGCGCGCATCCGGGTACATCAGCCACAGCGGCACCCAGGAGCCAAGGTCGAATGGGCGTTGCATGACCAGCCTCTCGGGTAACCCCGCAGCCTTCAAACGCt                                                                                 >  2:342441/1‑148 (MQ=255)                                                                             tcaccggcagcgcacagcccgaaacctggcatgacttctacggcttcccaccagccctgtatgcggtgcagtACCCAGGCGCCATGGTCGAATGGGCGTTGCATGTCCAGCCGCGCGGGTAACCCCGCAGCCTTCAACCGCTCACTGAc                                                                          <  5:240378‑M1/77‑1 (MQ=255)                                                                                       gACTGGGCAGGGAAACCTGCACCACGGGAATGCGGGCATCCGGGTACATCAGCGACAGCGGCTCCCAGGCGCCATGGTCGAATGGGCGTTGCATGTGCAGCCGCGCGGGTAACCCCGCAGCCTTCAACCGGTGACTGACCTGGCCA‑‑Gc                                                               >  5:312937/1‑148 (MQ=255)                                                                                       gACTGGGCAGGGAAACCTGCACCACGGGAATGCGCGCATCCGGGTACATCAGCGACAGCGGCACCCAGGCGCCATGGTCGAATGGGCGTTGCATGTCCAGCCGCGCGGGTAACCCCGCAGCCTTCAACCGCTCACTGACCTGGCCA‑‑Gc                                                               >  5:307822/1‑148 (MQ=255)                                                                                       gACTGGGCAGGGAAACCTGCACCACGGGAATGCGCGCATCCGGGTACATCAGCGACAGCGGCACCCAGGCGCCATGGTCGAATGGGCGTTGCATGTCCAGCCGCGCGGGTAACCCCGCAGCCTTCAACCGCTCACTGACCTGGCCA‑‑Gc                                                               >  5:312936/1‑148 (MQ=255)                                                                                                 ggAAACCTGCACCACGGGAATGCGCGCATCCGGGTACATCAGCGACAGCGGCACACAGGCGCCATGGTCGAATGGGCGTTGCATGACCAGCCGCGCGGGTAACCCCGCAGCCTTCAACCGCTCACTGACCTGGCCA‑‑GCAAGCCCGGGCt                                                    >  7:198564/1‑149 (MQ=255)                                                                                                       cTGCACCACGGGAATGCGCGCATCCGGGTACATCAGCGACAGCGGCACCCAGGCGCCATGGTCGAATGGGCGTTGCATGTCCAGCCGCGCGGGTAACCCCGCAGCCTTCAACCGCTCACTGACCTGGCCA‑‑GCAAGCCCGGGCTCGCCCg                                              >  6:366510/1‑149 (MQ=255)                                                                                                        tGCACCACGGGAATGCGCGCATCCGGGTACATCAGCGACAGCGGCACCCAGGCGCCATGGTCGAATGGGCGTTGCATGTCCAGCCGCGCGGGTAACCCCGCAGCCTTCAAcc                                                                                    <  6:242002/112‑1 (MQ=255)                                                                                                        tGCACCACGGGAATGCGCGCATCCGGGTACATCAGCGACAGCGGCACCCAGGCGCCATGGTCGAATGGGCGTTGCATGTCCAGCCGCGCGGGTAACCCCGCAGCCTTCAAcc                                                                                    >  5:242002/1‑112 (MQ=255)                                                                                                        tGCACCACGGGAATGCGCGCATCCGGGTACATCAGCGACAGCGGCACCCAGGCGCCATGGTCGAATGGGCGTTGCATGTCCAGCCGCGCGGGTAACCCCGCAGCCTTCAACCGCTCACTGACCTGGCCA‑‑GCAAGCCCGGGCTCGCCCgg                                             >  6:30800/1‑149 (MQ=255)                                                                                                           atgacttctacggcttcccaccagccctgtatgcggtgcagtACCC‑GGCGCCATGGTCGAATGGGCGTTGCATGTCCAGCCGCGCGGGTAACCCCGCAGCCTTCAACCGCTCACTGACCTGGCCA‑‑GCAAGCCCGGGCTCGCCCGGCGcc                                         >  2:22409‑M1/43‑149 (MQ=255)                                                                                                            tgacttctacggcttcccaccagccctgtatgcggtgcagtACCC‑GGCGCCATGGTCGAATGGGCGTTGCATGTCCAGCCGCGCGGGTAACCCCGCAGCCTTCAACCGCTCACTGACCTGGCCA‑‑GCAAGCCCGGGCTCGCCCGGCGCCg                                        >  5:151847‑M1/42‑149 (MQ=255)                                                                                                                     cggcttcccaccagccctgtatgcggtgcagtACCCAGGCGCCATGGTCGAATGGGCGTTGCATGTCCAGCCGCGCGGGTAACCCCGCAGCCTTCAACCGCTCACTGCCCTGGCCA‑‑GCAAGCCCGGGCTCGCCCGGCGCCGGGTACTGc                                >  5:54465‑M1/33‑149 (MQ=255)                                                                                                                     cggcttcccaccagccctgtatgcggtgcagtACCCAGGCGCCATGGTCGAATGGGCGTTGCATGTCCAGCCGCGCGGGTAACCCCGCAGCCTTCAACCGCTCACTGACCTGGCCA‑‑GCAAGCCCGGGCTCGCCCGGCGCCGGGTACTg                                 >  6:240378‑M1/33‑148 (MQ=255)                                                                                                                     cggcttcccaccagccctgtatgcggtgcagtACCCAGGCGCCATGGTCGAATGGGCGTTGCATGTCCAGCCGCGCGGGTAACCCCGCAGCCTTCAACCGCTCACTGACCTGGCCA‑‑GCAAGCCCGGGCTCGCCCGGCGCCGGGTACTGc                                >  5:49123‑M1/33‑149 (MQ=255)                                                                                                                       cgcgcATCCGGGTACATCAGCGACAGCGGCACCCAGGCGCCATGGTCGAATGGGCGTTGCATGTCCAGCCGCGCGGGTAACCCCGCAGCCTTCAACCGCTCACTGACCTGGCCA‑‑GCAAGCCCGGGCTCGCCCGGCGCCGGGTACTGCa                               <  5:366510/148‑1 (MQ=255)                                                                                                                                  gTACATCAGCGACAGCGGCACCCAGGCGCCATGGTCGAATGGGCGTTGCATGTCCAGCCGCGCGGGTAACCCCGCAGCCTTCAACCGCTCACTGACCTGGCCA‑‑GCAAGCCCGGGCTCGCCCGGCGCCGGGTACTGCACCGCATACAggg                   <  6:312936/149‑1 (MQ=255)                                                                                                                                  gTACATCAGCGACAGCGGCACCCAGGCGCCATGGTCGAATGGGCGTTGCATGTCCAGCCGCGCGGGTAACCCCGCAGCCTTCAACCGCTCACTGACCTGGCCA‑‑GCAAGCCCGGGCTCGCCCGGCGCCGGGTACTGCACCGCATACAggg                   <  6:307822/149‑1 (MQ=255)                                                                                                                                  gTACATCAGCGACACCGGCACCCAGGCGCCATGCTCGAATGCGCGTTGCATGTCCACCCGCGCGGGTAACCCCCCAGCCTTCAACCCCTCACTGACCTGGCCA‑‑GCAAGCCCGGGCTCCCCCGGCGCCGGGTACAGCACCGCATACAggg                   <  6:312937/149‑1 (MQ=255)                                                                                                                                   tACATCAGCGACAGCGGCACCCAGGCGCCATGGTCGAATGGGCGTTGCATGTCCAGCCGCGCGGGTAACCCCGCAGCCTTCAACCGCTCACTGACCTGGCCA‑‑GCAAGCCCGGGCTCGCCCGGCGCCGGGTACTGCACCGCATACAGGGc                  >  7:1343/1‑149 (MQ=255)                                                                                                                                       tCAGCGACAGCGGCACCCAGGCGCCATGGTCGAATGGGCGTTGCATGTCCAGCCGCGCGGGTAACCCCGCAGCCTTCTACCGCGCCCTGACCTGAAAAAGGCAAGCCCCGGCACGCCCGGCCCCGGGTACTGCACCCCATACAGCGCtg                >  1:123031/1‑149 (MQ=255)                                                                                                                                       tCAGCGACAGCGGCACCCAGGCGCCATGGTCGAATGGGCGTTGCATGTCCAGCCGCGCGGGTAACCCCGCAGCCTTCAACCGCTCACTGACCTGGCCA‑‑GCAAGCCCGGGCTCGCCCGGCGCCGGGTACTGCACCGCATACAGGGCtggt              >  7:69503/1‑149 (MQ=255)                                                                                                                                       tCAGCGACAGCGGCACCCAGGCGCCATGGTCGAATGGGCGTTGCATGTCCAGCCGCGCGGGTAACCCCGCAGCCTTCAACCGCTCACTGACCTGGCCA‑‑GCAAGCCCGGGCTCGCCCGGCGCCGGGTACTGCACCGCATACAGGGCtggt              <  4:134808/149‑1 (MQ=255)                                                                                                                                        cAGCGACAGAGGCACCCAGGCGCCATGGTCGAATGGGCGTTGCATGTCCAGCCGCGCGGGTAACCCCGCAGCCTTCAACCGCTCACTGACCTGGCCA‑‑GCAAGCCCGGGCTCGCCCGGCGCCGGGTACTGCACCGCATACAGGGCtggtg             >  7:66559/1‑149 (MQ=255)                                                                                                                                         aGCGACAGCGGCACCCAGGCGCCATGGTCGAATGGGCGTTGCATGTCCAGCCGCGCGGGTAACCCCGCAGCCTTCAACCGCTCACTGACCTGGCCA‑‑GCAAGCCCGGGCTCGCCCGGCGCCGGGTACTGCACCGCATACAGGGCtggtg             <  8:66559/148‑1 (MQ=255)                                                                                                                                               aGCGGCACCCAGGCGCCATGGTCGAATGGGCGTTGCATGTCCAGCCGCGCGGGTAACCCCGCAGCCTTCAACCGCTCACTGACCTGGCCA‑‑GCAAGCCCGGGCTCGCCCGGCGCCGGGTACTGCACCGCATACAGGGCTGGTGGGAAGcc      >  8:18684/1‑149 (MQ=255)                                                                                                                                                   gCACCCAGGCGCCATGGTCGAATGGGCGTTGCATGTCCAGCCGCGCGGGTAACCCCGCAGCCTTCAACCGCTCACTGACCTGGCCA‑‑GCAAGCCCGGGCTCGCCCGGCGCCGGGTACTGCACCGCATACAGGGCTGGTGGGAAGCCg     >  7:6650/1‑146 (MQ=255)                                                                                                                                                     ACCCAGGCGCCATGGTCGAATGGGCGTTGCATGTCCAGCCGCGCGGGTAACCCCGCAGCCTTCAACCGCTCACTGACCTGGCCA‑‑GCAAGCCCGGGCTCGCCCGGCGCCGGGTACTGCACCGCATACAGGGCTGGTGGGAAGCCGTAg  <  4:45577‑M1/147‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     GCTGCCCGAACCTATTAGCAGTACATCCTCGGCACGCAACCCCGCCAGTGCCTGGCCCACCTTCAGCTGCAGCGCCGGCCCCATGTGACTGGGCAGGGAAACCTGCACCACGGGAATGCGCGCATCCGGGTACATCAGCGACAGCGGCACCCAGGCGCCATGGTCGAATGGGCGTTGCATGTCCAGCCGCGCGGGTAACCCCGCAGCCTTCAACCGCTCACTGACCTGGCCA‑‑GCAAGCCCGGGCTCGCCCGGCGCCGGGTACTGCACCGCATACAGGGCTGGTGGGAAGCCGTAG  >  NC_002947/2092727‑2093021

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.