New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3168508	37 (0.610)	3 (0.050)	3/252	NT	7.6%	coding (403/2880 nt)	PP_2782	class III pyridoxalphosphate dependent aminotransferase
	?	NC_002947	= 3168531	38 (0.660)					coding (426/2880 nt)	PP_2782	class III pyridoxalphosphate dependent aminotransferase

GATCCGCGGTGCGGCCGGGCAATTGGGGCGAGCGCTCAGCGACGCCTTCAATCGCGAACTGAAGAACACCGAACGTTATATTTCGACTTTCTCCAACAGCGGCGCGGAGGCGGTGGAAATCGCCGTCAAGCACGCGGAGTTCCGTCGTCAGAAGAGCCTGCAAAAGCAGTTCGACGACATCGATTTCACCCTGGCCAGCCTGACCGCCAGCGAACACGCTTACCGCGAACTGGATGTGGCCGACCTCGACCTGCCTGCAGGTGTCCTGCCGGCCACCCTTAACAGCGTGACCT  >  NC_002947/3168360‑3168652                                                                                                                                                     |                                                                                                                                                 gATCCGCGGTGCGGCCGGGCAATTGGGGCGAGCGCTCAGCGACGCCTTCAATCGCGAACTGAAGAACACCGAACGTTATATTTCGACTTTCTCCAACAGCGGCGCGGAGGCGGTGGAAATCGCCGTCAAGCACGCGGAGTTCCGTCGTC                                                                                                                                                  <  4:333850‑M1/149‑1 (MQ=255)           gCGGCCGGGCAATTGGGGCGAGCGCTCAGCGACGCCTTCAATCGCGAACTGAAGAACACCGAACGTTATATTTCGACTTTCTCCAACAGCGGCGCGGAGGCGGTGGAAATCGCCGTCAAGCACGCGGAGTTCCGTCGTCAGAAGAGCCt                                                                                                                                        >  4:104650/1‑149 (MQ=255)             ggCCGGGCAATTGGGGCGAGCGCTCAGCGACGCCTTCAATCGCGAACTGAAGAACACCGAACGTTATATTTCGACTTTCTCCAACAGCGGCGCGGAGGCGGTGGAAATCGCCGTCAAGCACGCGGAGTTCCGTCGTCAGAAGAGCCTg                                                                                                                                       >  5:176093/1‑148 (MQ=255)              gCCGGGCAATTGGGGCGAGCGCTCAGCGACGCCTTCAATCGCGAACTGAAGAACACCGAACGTTATATTTCGACTTTCTCCAACAGCGGCGCGGAGGCGGTGGAAATCGCCGTCAAGCACGCGGAGTTCCGTCGTCagaag                                                                                                                                             >  8:284035/1‑141 (MQ=255)              gCCGGGCAATTGGGGCGAGCGCTCAGCGACGCCTTCAATCGCGAACTGAAGAACACCGAACGTTATATTTCGACTTTCTCCAACAGCGGCGCGGAGGCGGTGGAAATCGCCGTCAAGCACGCGGAGTTCCGTCGTCagaag                                                                                                                                             <  7:284035/141‑1 (MQ=255)                   gCAATTGGGGCGAGCGCTCAGCGACGCCTTCAATCGCGAACTGAAGAACACCGAACGTTATATTTCGACTTTCTCCAACAGCGGCGCGGAGGCGGTGGAAATCGCCGTCAAGCACGCGGAGTTCCGTCGTCAGAAGAGCCTGCAAAAGc                                                                                                                                <  2:159693/149‑1 (MQ=255)                    cAATTGGGGCGAGCGCTCAGCGACACCTTCCATCGCGAACTGAAGAACACCGCACGTTATATTTCGACTTTCTCCACCAGCGGCGCGGAGGCGGTGGAAATCGCCGTCAAGCACGCGGAGTTCCGTCGTCAGAAGAGCCTGCAAAAGCa                                                                                                                               <  8:93829/149‑1 (MQ=255)                        tGGGGCGAGCGCTCAGCGACGCCTTCAATCGCGAACTGAAGAACACCGAACGTTATATTTCGCCTTTCTCCAACAGCGGCGCGGAGGCGGTGGAAATCGCCGTCAAGCACGCGGAGTTCCGTCGTCAGAAGAGCCTGCAAAAGCAGTTc                                                                                                                           >  1:145611/1‑149 (MQ=255)                               aGCGCTCAGCGACGCCTTCAATCGCGAACTGAAGAACACCGAACGTTATATTTCGACTTTCTCCAACAGCGGCGCGGAGGCGGTGGAAATCGCCGTCAAGCACGCGGAGTTCCGTCGTCgaactgcttttgcaggctcttctgacgacg                                                                                                                    <  7:271451‑M1/149‑31 (MQ=255)                                  gcTCGGCGACGCCTTCAATCCCGAACTGAAGAACACCGAACGTTATATTTCGACTTTCTCCAACAGCGGCGCGGAGGCGGTGGAAATCGCCGTCAAGCACGCGGAGTTCCGTCGTCAGAAGAGCCTGCAAAAGCAGTTCGACGACATc                                                                                                                  >  2:133105/1‑148 (MQ=255)                                   cTCAGCGACGCCTTCAATCGCGAACTGAAGAACACCGAACGTTATATTTCGACTTTCTCCAACAGCGGCGCGGAGGCGGTGGAAATCGCCGTCAAGCACGCGGAGTTCCGTCGTCAGAAGAGCCTGCAAAAGCAGTTCGACGACATCGa                                                                                                                <  5:33/149‑1 (MQ=255)                                    tCAGCGACGCCTTCAATCGCGAACTGAAGAACACCGAACGTTATATTTCGACTTTCTCCAACAGCGGCGCGGAGGCGGTGGAAATCGCCGTCAAGCACGCGGAGTTCCGTCGTCAGAAGAGCCTGCAAAAGCAGTTCGACGACATCGAt                                                                                                               >  5:311678/1‑149 (MQ=255)                                              cTTCAATCGCGAACTGAAGAACACCGAACGTTATATTTCGACTTTCTCCAACAGCGGCGCGGAGGCGGTGGAAATCGCCGTCAAGCACGCGGAGTTCCGTCGTCAGAAGAGCCTGCAAAAGCAGTTCGACGACATCGATTTCACCCTgg                                                                                                     >  3:309994/1‑149 (MQ=255)                                              cTTCAATCGCGAACTGAAGAACACCGAACGTTATATTTCGACTTTCTCCAACAGCGGCGCGGAGGCGGTGGAAATCGCCGTCAAGCACGCGGAGTTCCGTCGTCAGAAGAGCCTGCAAAAGCAGTTCGACGACATCGATTTCACCCTgg                                                                                                     >  1:285402/1‑149 (MQ=255)                                                     cgcgAACTGAAGAACACCGAACGTTATATTTCGACTTTCTCCAACAGCGGCGCGGAGGCGGTGGAAATCGCCGTCAAGCACGCGGAGTTCCGTCGTCAGAAGAGCCTGCAAAAGCAGTTCGACGACATCGATTTCAcc                                                                                                         >  3:164665/1‑138 (MQ=255)                                                     cgcgAACTGAAGAACACCGAACGTTATATTTCGACTTTCTCCAACAGCGGCGCGGAGGCGGTGGAAATCGCCGTCAAGCACGCGGAGTTCCGTCGTCAGAAGAGCCTGCAAAAGCAGTTCGACGACATCGATTTCAcc                                                                                                         <  4:164665/138‑1 (MQ=255)                                                      gcgAACTGAAGAACACCGAACGTTATATTTCGACTTTCTCCAACAGCGGCGCGGAGGCGGTGGAAATCGCCGTCAAGCACGCGGAGTTCCGTCGTCAGAAGAGCCTGCAAAAGCAGTTc                                                                                                                           <  3:56999/119‑1 (MQ=255)                                                      gcgAACTGAAGAACACCGAACGTTATATTTCGACTTTCTCCAACAGCGGCGCGGAGGCGGTGGAAATCGCCGTCAAGCACGCGGAGTTCCGTCGTCAGAAGAGCCTGCAAAAGCAGTTc                                                                                                                           >  4:56999/1‑119 (MQ=255)                                                           cTGAAGAACACCGAACGTTATATTTCGACTTTCTCCAACAGCGGCGCGGAGGCGGTGGAAATCGCCGTCAAGCACGCGGAGTTCCGTCGTCAGAAGAGCCTGCAAAAGCAGTTCGACGACATCGATTTCACCCTGGCCAGCCTGACCGc                                                                                        <  6:311678/149‑1 (MQ=255)                                                              aagaaCACCGAACGTTATATTTCGACTTTCTCCAACAGCGGCGCGGAGGCGGTGGAAATCGCCGTCAAGCACGCGGAGTTCCGTCGTCAGAAGAGCCTGCAAAAGCAGTTCGACGACATCGATTTCACCCTGGCCAGCCTGACCGCCAg                                                                                     >  2:106071/1‑149 (MQ=255)                                                               agaaCACCGAACGTTATATTTCGACTTTCTCCAACAGCGGCGCGGAGGCGGTGGAAATCGCCGTCAAGCACGCGGAGTTCCGTCGACAGAAGAGCCTGCAAAAGCAGTTCGACGACATCGATTTCACCCTGGCCAGCCTGCCCGCCAGc                                                                                    >  8:162997/1‑149 (MQ=255)                                                                                atTTCGACTTTCTCCAACAGCGGCGCGGAGGCGGTGGAAATCGCCGTCAAGCACGCGGAGTTCCGTCGTCAGAAGAGCCTGCAAAAGCAGTTCGACGACATCGATTTCACCCTGGCCAGCCTGACCGCCAGCGAACACGCTTACcgcg                                                                    >  3:17837/1‑148 (MQ=255)                                                                                 tttCGACTTTCTCCAACAGCGGCGCGGAGGCGGTGGAAATCGCCGTCAAGCACGCGGAGTTCCGTCGTCAGAAGAGCCTGCAAAAGCAGTTCGACGACATCGATTTCACCCTGGCCAGCCTGACCGCCAGCGAACACGCTTACCGCGaa                                                                  >  7:352155/1‑149 (MQ=255)                                                                                 tttCGACTTTCTCCAACAGCGGCGCGGAGGCGGTGGAAATCGCCGTCAAGCACGCGGAGTTCCGTCGTCAGAAGAGCCTGCAAAAGCAGTTCGACGACATCGATTTCACCCTGGCCAGCCTGACCGCCAGCGAACACGCTTACCGCGaa                                                                  >  3:218144/1‑149 (MQ=255)                                                                                   tCGACTTTCTCCAACAGCGGCGCGGAGGCGGTGGAAATCGCCGTCAAGCACGCGGAGTTCCGTCGTCgaactgcttttgcaggctcttctgacgacggaact                                                                                                               >  8:334887‑M1/1‑67 (MQ=255)                                                                                   tCGACTTTCTCCAACAGCGGCGCGGAGGCGGTGGAAATCGCCGTCAAGCACGCGGAGTTCCGTCGTCgaactgcttttgcaggctcttctgacgacggaact                                                                                                               <  7:334887‑M1/102‑36 (MQ=255)                                                                                    cGACTTTCTCCAACAGCGGCGCGGAGGCGGTGGAAATCGCCGTCAAGCACGCGGAGTTCCGTCGTCAGAAGAGCCTGCAAAAGCAGTTCGACGACATCGATTTCACCCTGGCCAGCCTGACCGCCAGCGAACACGCTTACCGCGAACt                                                                <  1:330275/148‑1 (MQ=255)                                                                                      aCTTTCTCCAACAGCGGCGCGGAGGCGGTGGAAATCGCCGTCAAGCACGCGGAGTTCCGTCGTCAGAAGAGCCTGCAAAAGCAGTTCGACGACATCGATTTCACCCTGGCCAGCCTGACCGCCAGCGAACACGCTTACCGCGAACTGGa                                                             <  4:218144/149‑1 (MQ=255)                                                                                      aCTTTCTCCAACAGCGGCGCGGAGGCGGTGGAAATCGCCGTCAAGCACGCGGAGTTCCGTCGGCAGAAGAGCCTGCAAAAGCAGGTCGACGCCATCGATTTCACCCTGGCCAGCCTGACCGCCAGCGAACACGCTTACCGCGAACTGGa                                                             >  6:226617/1‑149 (MQ=255)                                                                                          tctcCAACAGCGGCGCGGAGGCGGTGGAAATCGCCGTCAAGCACGCGGAGTTCCGTCGTCAGAAGAGCCTGCAAAAGCAGTTCGACGACATCGATTTCACCCTGGCCAGCCTGACCGCCAGCGAACACGCTTACCGCGAACTGGAtg                                                           <  4:309994/147‑1 (MQ=255)                                                                                              cAACAGCGGCGCGGAGGCGGTGGAAATCGCCGTCAAGCACGCGGAGTTCCGTCGTCAGAAGAGCCTGCAAAAGCAGTTCGACGACATCGATTTCACCCTGGCCAGCCTGACCGCCAGCGAACACGCTTACCGCGAACTGGATGTGGcc                                                      >  6:158043/1‑148 (MQ=255)                                                                                               aaCAGCGGCGCGGAGGCGGTGGAAATCGCCGTCAAGCACGCGGAGTTCCGTCGTCAGAAGAGCCTGCAAAAGCAGTTCGACGACATCGATTTCACCCTGGCCAGCCTGACCGCCAGCGAACACGCTTACCGCGAACTGGATGTGGCcga                                                    >  3:83623/1‑149 (MQ=255)                                                                                                aCAGCGGCGCGGAGGCGGTGGAAATCGCCGTCAAGCACGCGGAGTTCCGTCGTCAGAAGAGCCTGCAAAAGCAGTTCGACGACATCGATTTCACCCTGGCCAGCCTGACCGCCAGCGAACACGCTTACCGCGAACTGGATGTGGCcgac                                                   <  6:365477/149‑1 (MQ=255)                                                                                                    cggcgCGGAGGCGGTGGAAATCGCCGTCAAGCACGCGGAGTTCCGTCGTCAGAAGAGCCTGCAAAAGCAGTTCGACGACATCGATTTCACCCTGGCCAGCCTGACCGCCAGCGAACACGCTTACCGCGAACTGGATGTGGCcgacctcg                                               <  1:106071/149‑1 (MQ=255)                                                                                                     ggcgCGGAGGCGGTGGAAATCGCCGTCAAGCACGCGGAGTTCCGTCGTCAGAAGAGCCTGCAAAAGCAGTTCGACGACATCGATTTCACCCTGGCCAGCCTGACCGCCAGCGAACACGCTTACCGCGAACTGGATGTGGCcgacctcga                                              >  8:46638/1‑149 (MQ=255)                                                                                                          ggAGGCGGTGGAAATCGCCGTCAAGCACGCGGAGTTCCGTCGTCAGAAGAGCCTGCAAAAGCAGTTCGACGACATCGATTTCACCCTGGCCAGCCTGACCGCCAGCGAACACGCTTACCGCGAACTGGATGTGGCCGACCTCGAcctgc                                         <  2:145611/149‑1 (MQ=255)                                                                                                                ggTGGAAATCGCCGTCAAGCACGCGGAGTTCCGTCGTCAGAAGAGCCTGCAAAAGCAGTTCGACGACATCGATTTCACCCTGGCCAGCCTGACCGCCAGCGAACACGCTTACCGCGAACTGGATGTGGCCGACCTCGACCTGCCTGCAg                                   >  3:227599/1‑149 (MQ=255)                                                                                                                     aaaTCGCCGTCAAGCACGCGGAGTTCCGTCGTCAGAAGAGCCTGCAAAAGCAGTTCGACGACATCGATTTCACCCTGGCCAGCCTGACCGCCAGCg                                                                                   <  6:290045/96‑1 (MQ=255)                                                                                                                     aaaTCGCCGTCAAGCACGCGGAGTTCCGTCGTCAGAAGAGCCTGCAAAAGCAGTTCGACGACATCGATTTCACCCTGGCCAGCCTGACCGCCAGCg                                                                                   >  5:290045/1‑96 (MQ=255)                                                                                                                                aaGCACGCGGAGTTCCGTCGGCAGAAGAGCCTGCAAAAGCAGTTCGACGACATCGATTTCACCCTGGCCAGCCTGACCGCCAGCGAACACGCTTACCGCGAACTGGATGTGGCCGACCTCGACCTGCCTGCAGGTGTCCTGCCGGCCa                    <  5:226617/148‑1 (MQ=255)                                                                                                                                  gCACGCGGAGTTCCGTCGTCAGAAGAGCCTGCAAAAGCAGTTCGACGACATCGATTTCACCCTGGCCAGCCTGACCGCCAGCGAACACGCTTACCGCGAACTGGATGTGGCCGACCTCGACCTGCCTGCAGGTGTCCTGCCGGCCAccc                 <  8:352155/149‑1 (MQ=255)                                                                                                                                       cgGAGTTCCGTCGTCAGAAGAGCCTGCAAAAGCAGTTCGACGACATCGATTTCACCCTGGCCAGCCTGACCGCCAGCGAACACGCTTACCGCGAACTGGATGTGGCCGACCTCGACCTGCCTGCAGGTGTCCTGCCGGCCACCCTTAAc            <  6:176093/149‑1 (MQ=255)                                                                                                                                          aGTTCCGTCGTCAGAAGAGCCTGCAAAAGCAGTTCgacgacggaactccgcgtgcttgacggcgatttccaccgcctccgcgccgctgttggagaaagtcga                                                        <  7:334887‑M2/102‑68 (MQ=255)                                                                                                                                          aGTTCCGTCGTCAGAAGAGCCTGCAAAAGCAGTTCgacgacggaactccgcgtgcttgacggcgatttccaccgcctccgcgccgctgttggagaaagtcga                                                        >  8:334887‑M2/1‑35 (MQ=255)                                                                                                                                               cgtcgtCAGAAGAGCCTGCAAAAGCAGTTCgacgacggaactccgcgtgcttgacggcgatttccaccgcctccgcgccgctgttggagaaagtcgaaatataacgttcggtgttcttcagttcgcgattgaaggcgtcgctgagcgct    <  7:271451‑M2/149‑120 (MQ=255)                                                                                                                                                gtcgtcAGAAGAGCCTGCAAAAGCAGTTCGACGACATCGATTTCACCCTGGCCAGCCTGACCGCCAGCGAACACGCTTACCGCGAACTGGATGTGGCCGACCTCGACCTGCCTGCAGGTGTCCTGCCGGCCACCCTTAACAGCGTGAcc   >  7:291802/1‑149 (MQ=255)                                                                                                                                                 tcgtcAGATGAGCCTGCAATAGCAGTTCGACGTCATGGATTTCTCCCTGGCCAGCCTGACCGCACGCGAACACGCTTAGCGCGAACTGGATGTGGCCGACCTCGACCTGCCTGCAGGTGTCCTGCCGGCCACCCTTAACAGCGTGACCt  <  6:342290/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                 GATCCGCGGTGCGGCCGGGCAATTGGGGCGAGCGCTCAGCGACGCCTTCAATCGCGAACTGAAGAACACCGAACGTTATATTTCGACTTTCTCCAACAGCGGCGCGGAGGCGGTGGAAATCGCCGTCAAGCACGCGGAGTTCCGTCGTCAGAAGAGCCTGCAAAAGCAGTTCGACGACATCGATTTCACCCTGGCCAGCCTGACCGCCAGCGAACACGCTTACCGCGAACTGGATGTGGCCGACCTCGACCTGCCTGCAGGTGTCCTGCCGGCCACCCTTAACAGCGTGACCT  >  NC_002947/3168360‑3168652

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.