New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4339694 =	55 (0.910)	3 (0.050)	3/254	NT	5.5%	coding (801/1122 nt)	ribAB‑II	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase
	?	NC_002947	4339728 =	51 (0.880)					coding (835/1122 nt)	ribAB‑II	3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase

GGCACCTTCCGCCTGGTCACCTATGAAGACCGCATCGAAGGTGGCGTGCACATGGCCATGGTCATGGGCGACATTCGCCGCGAACAGCCGACCCTGGTGCGGGTGCATGTGATTGACCCGCTGCGCGACCTGGTGGGCGCCGAGTACGCCGGCCCCGCCAACTGGACGCTGTGGGCGGCGCTGCAGAAGGTGGCTGAGGAAGGTACTGG‑CGTGGTGGTGATCCTGGCCAACCACGAATCC‑TCCCAGGCCTTGCTTGAGCGTGTGCCACAACTGACCCACC  >  NC_002947/4339548‑4339827                                                                                                                                                   |                                                                                                                                        ggCACCTTCCGCCTGGTCACCTATGAAGACCGCATCGAAGGTGGCGTGCACATGGCCATGGTCATGGGCGACATTCGCCGCGAACAGCCGACCCTGGTGCGGGTGCATGTGATTGACCCGCTGCGCGACCTGGTGGGCGCCGAGTACGc                                                                                                                                       >  3:286592/1‑149 (MQ=255)    aCCTTCCGCCTGGTCACCTATGAAGACCGCATCGAAGGTGGCGTGCACATGGCCATGGTCATGGGCGACATTCGCCGCGAACAGCCGACCCTGGTGCGGGTGCATGTGATTGACCCGCTGCGCGACCTGGTGGGCGCCGAGTACGCCgg                                                                                                                                    >  8:245820/1‑149 (MQ=255)         ccGCCTGGTCACCTATGAAGACCGCATCGAAGGTGGCGTGCACATGGCCATGGTCATGGGCGACATTCGCCGCGAACAGCCGACCCTGGTGCGGGTGCATGTGATTGACCCGCTGCGCGACCTGGTGGGCGCCGAGTACGCCGGCCCCg                                                                                                                               >  2:213526/1‑149 (MQ=255)         ccGCCTGGTCACCTATGAAGACCACATCGAAGGTGGCGTGCACATGGCCATGCTCCCGGGCGACCCCCGCCGCGAACAGCCGACCCTGGTGCGGGTGCATGTGATTGACCCGCTGCGCGACCTGGTGGGCGCCGAGTACGCCGGcccc                                                                                                                                <  1:312655/148‑1 (MQ=255)                 tCACCTATGAAGACCGCATCGAAGGTGGCGTGCACATGGCCATGGTCATGGGCGACATTCGCCGCGAACAGCCGACCCTGGTGCGGGTGCATGTGATTGACCCGCTGCGCGACCTGGTGGGCGCCGAGTACGCCGGCCCCGCCaa                                                                                                                           >  4:23158/1‑145 (MQ=255)                 tCACCTATGAAGACCGCATCGAAGGTGGCGTGCACATGGCCATGGTCATGGGCGACATTCGCCGCGAACAGCCGACCCTGGTGCGGGTGCATGTGATTGACCCGCTGCGCGACCTGGTGGGCGCCGAGTACGCCGGCCCCGCCaa                                                                                                                           <  3:23158/145‑1 (MQ=255)                   aCCTATGAAGACCGCATCGAAGGTGGCGTGCACATGGCCATGGTCATGGGCGACATTCGCCGCGAACAGCCGACCCTGGTGCGGGTGCATGTGATTGACCCGCTGCGCGACCTGGTGGGCGCCGAGTACGCCGGCCCCGCCAACTGGAc                                                                                                                     >  1:258320/1‑149 (MQ=255)                     cTATGAAGACCGCATCGAAGGTGGCGTGCACATGGCCATGGTCATGGGCGCCATTCGCCGCGAACAGCCGACCCTGGTGCGGGTGCATGTGATTGACCCGCTGCGCGACCTGGTGGGCGCCGAGTACGCCGGCCCCGCCAACTGGACGc                                                                                                                   >  6:309813/1‑149 (MQ=255)                               cGCATCGAAGGTGGCGTGCACATGGCCATGGTCATGGGCGACATTCGCCGCGAACAGCCGACCCTGGTGCGGGTGCATGTGATTGACCCGCTGCGCGACCTGGTGGGCGCCGAGTACGCCGGCCCCGCCAACTGGACGCTGTGggcggc                                                                                                         >  1:3447/1‑149 (MQ=255)                                gCATCGAAGGTGGCGTGCACATGGCCATGGTCATGGGCGACTTTCGCCGCGAACAGCCGACCCTGGTGCGGGTGCATGTGATTGACCCGCTGCGCGACCTGGTGGGCGCCGAGTACGCCGGCCCCGCCAACTGGACGCTGTGGgcggcg                                                                                                        <  5:323040/149‑1 (MQ=255)                                  aTCGAAGGTGGCGTGCACATGGCCATGGTCATGGGCGACATTCGCCGCGAACAGCCGAACCTGGTGCGGGTGCATGTGATTGACCCGCTGCGCGACCTGGTGGGCGCCGAGTACGCCGGCCCCGCCAACTGGACGCTGTGGGCGGCGCt                                                                                                      >  7:140184/1‑149 (MQ=255)                                         gcacagggtgggtcagttgtggcacacgctcaagcaaggcctgggaggattcgtggttggccaggatcaccaccacgccagtaccttcctcagccaccttctgcagCGCCGGCCCCGCCAACTGGACGCTGTGGGCGGCGCTGCAGAAg                                                                                               >  2:350751‑M1/107‑149 (MQ=255)                                            gCGTGCACATGGCCATGGTCATGGGCGACATTCGCCGCGAACAGCCGACCCTGGTGCGGGTGCATGTGATTGACCCGCTGCGCGACCTGGTGGGCGCCGAGTACGCCGGCCCCGCCAACTGGACGCTGTGGGCGGCGCTGCAGAAGGTg                                                                                            >  1:163377/1‑149 (MQ=255)                                               tGCACATGGCCATGGTCATGGGCGACATTCGCCGCGAACAGCCGACCCTGGTGCGGGTGCATGTGATTGACCCGCTGCGCGACCTGGTGGGCGCCGAGTACGCCGGCCCCGCCAACTGGACGCtgt                                                                                                                >  5:20651/1‑126 (MQ=255)                                               tGCACATGGCCATGGTCATGGGCGACATTCGCCGCGAACAGCCGACCCTGGTGCGGGTGCATGTGATTGACCCGCTGCGCGACCTGGTGGGCGCCGAGTACGCCGGCCCCGCCAACTGGACGCtgt                                                                                                                <  6:20651/126‑1 (MQ=255)                                                       gCCATGGTCATGGGCGACATTCGCCGCGAACAGCCGACCCTGGTGCGGGTGCATGTGATTGACCCGCTGCGCGACCTGGTGGGCGCCGAGTACGCCGGCCCCGCCAACTGGACGCTGTGGGCGGCGCTGCGGAAGGTGGCTGAGGAAg                                                                                  <  4:286096/148‑1 (MQ=255)                                                       gCCATGGTCATGGGCGACATTCGCCGCGAACAGCCGACCCTGGTGCGGGTGCATGTGATTGACCCGCTGCGCGACCTGGTGGGCGCCGAGTACGCCGGCCCCGCCAACTGGACGCTGTGGGCGGCGCTGCAGAAGGTGGCTGAGGAAg                                                                                  <  5:31321/148‑1 (MQ=255)                                                       agttgtggcacacgctcaagcaaggcctgggaggattcgtggttggccaggatcaccaccacgccagtaccttcctcagccaccttctgcagCGCCGGCCCCGCCAACTGGACGCTGTGGGCGGCGCTg                                                                                                     <  8:225634‑M1/37‑1 (MQ=255)                                                       agttgtggcacacgctcaagcaaggcctgggaggattcgtggttggccaggatcaccaccacgccagtaccttcctcagccaccttctgcagCGCCGGCCCCGCCAACTGGACGCTGTGGGCGGCGCTg                                                                                                     >  7:225634‑M1/93‑129 (MQ=255)                                                          aTGGTCATGGGCGACATTCGCCGCGAACAGCCGACCCTGGTGCGGGTGCATGTGATTGACCCGCTGCGCGACCTGGTGGGCGCCGAGTACGCCGGCCCCGCCAACTGGACGCTGTGGGCGGCGCTGCAGAAGGTGGCTGAGGAAGGTAc                                                                              <  2:258320/149‑1 (MQ=255)                                                           tGGTCATGGGCGACATTCGCCGCGAACAGCCGACCCTGGTGCGGGTGCATGTGATTGACCCGCTGCGCGACCTGGTGGGCGCCGAGTACGCCGGCCCCGCCAACTGGACGCTGTGGGCGGCGCTGCAGAAGGTGGCTGAGGAAGGTACt                                                                             >  7:168836/1‑149 (MQ=255)                                                              tCATGGGCGACATTCGCCGCGAACAGCCGACCCTGGTGCGGGTGCATGTGATTGACCCGCTGCGCGACCTGGTGGGCGCCGAGTACGCCGGCCCCGCCAACTGGACGCTGTGGGCGGCGCTGCAGAAGGTGGCTGAGGAAGGTACTGG‑c                                                                         <  4:286592/149‑1 (MQ=255)                                                              tCATCGGCGACATTCGCCGCGAACAGCCGACCCTGGTGCGGGTGCATGTGATTGACCCGCTGCGCGACCTGGTGGGCGCCGAGTACGCCGGCCACGCCAACTCGACGCTGTGGGCGCCCCTGCAGAAGGTCGCTGACGAACGTACTGG‑c                                                                         >  3:217409/1‑149 (MQ=255)                                                                 tGGGCGACATTCGCCGCGAACAGCCGACCCTGGTGCGGGTGCATGTGATTGACCCGCTGCGCGACCTGGTGGGCGCCGAGTACGCCGGCCCCGCCAACTGGACGCTGTGGGCGGCGCTGCAGAAGGTGGCTGAGGAAGGTACTGG‑Cgtg                                                                      >  5:284320/1‑149 (MQ=255)                                                                   ggCGACATTCGGCGCGAACAGCCGACCCTTGTGCGGGTGCATGTGTTTGACCGGCTGCGCGACCTGTTGGGGGCCGAGTACGCCGGCCCCGCCATCTGGACGCTGTGGGCGGCGCTGCAGAAGGTGGCTGAGGAAGGTACTGG‑Cgtgg                                                                     <  4:87973/148‑1 (MQ=255)                                                                   ggCGACATTCGCCGCGAACAGCCGACCCTGGTGCGGGTGCATGTGATTGACCCGCTGCGCGACCTGGTGGGCGCCGAGTACGCCGGCCCCGCCAACTGGACGCTGTGGGCGGCGCTGCAGAAGGTGGCTGAGGaa                                                                                   <  6:283845/135‑1 (MQ=255)                                                                         aTTCGCCGCGAACAGCCGACCCTGGTGCGGGTGCATGTGATTGCCCCGCTGCGCGACCTGGTGGGCGCCGAGTACGCCGGCCCCGCCAACTGGACGCTGTGGGCGGCGCTGCAGAAGGTGGCTGAGGAAGGTACTCG‑CGTGGTGGTGAt                                                              >  5:361571/1‑149 (MQ=255)                                                                            cgccgcGAACAGCCGACCCTGGTGCGGGTGCATGTGATTGACCCGCTGCGCGACCTGGTGGGCGCCGAGTACGCCGGCCCCGCCAACTGGACGCTGTGGGCGGCGCTGCAGAAGGTGGCTGAGGAAGGTACTGG‑CGTGGTGGTGATcc                                                            <  6:284320/148‑1 (MQ=255)                                                                             gccgcGAACAGCCGACCCTGGTGCGGGTGCATGTGATTGACCCGCTGCGCGACCTGGTGGGCGCCGAGTACGCCGGCCCCGCCAACTGGACGCTGTGGGCGGCGCTGCAGAAGGTGGCTGAGGAAGGTACTGG‑CGTGGTGGTGATCCTg                                                          <  8:140184/149‑1 (MQ=255)                                                                                 cgAACAGCCGACCCTGGTGCGGGTGCATGTGATTGACCCGCTGCGCGACCTGGTGGGCGCCGAGTACGCAGGCCCCGCCAACTGGACGCTGTGGGCGGCGCTGCAGAAGGTGGCTGAGGAAGGTACTGG‑CGTGGTGGTGATCCTGGcc                                                       >  2:254700/1‑148 (MQ=255)                                                                                   aaCAGCCGACCCTGGTGCGGGTGCATGTGATTGACCCGCTGCGCGACCTGGTGGGCGCCGAGTACGCCGGCCCCGCCAACTGGACGCTGTGGGCGGCGCTGCAGAAGGTGGCTGAGGAAGGTACTGG‑CGTGGTGGTGATCCTGGCCAAc                                                    <  2:163377/149‑1 (MQ=255)                                                                                      aGCCGACCCTGGTGCGGGTGCATGTGATTGACCCGCTGCGCGACCTGGTGGGCGCCGAGTACGCCGGCCCCGCCAACTGGACGCTGTGGGCGGCGCTGCAGAAGGTGGCTGAGGAAGGTACTGG‑CGTGGTGGTGATCCTGGCCAACCAc                                                 <  5:39299/149‑1 (MQ=255)                                                                                         cgtcccTGGTGCGGGTGGATGTGATTGTCCCGCTGCGCGTCCTGGTGGGCGCCGAGTACGCCGGCCCCGCCAACTGGACGCTGTGGGCGGCGCTGCAGAAGGTGGCTGTGGAAGGTACTGGCCGTGGTGGTGATCCTGGCCAACCACGa                                               <  1:208830/146‑1 (MQ=255)                                                                                               tGGTGCGGGTGCATGTGATTGACCCGCTGCGCGACCTGGTGGGCGCCGAGTACGCCGGCCCCGCCAACTGGACGCTGTGGGCGGCGCTGCAGAAGGTGGCTGAGGAAGGTACTGG‑CGTGGTGGTGATCCTGGCCAACCAGGAAtcc‑tcc                                       >  3:138144/1‑149 (MQ=255)                                                                                               tGGTGCGGGTGCATGTGATTGACCCGCTGCGCGACCTGGTGGGCGCCGAGTACGCCGGCCCCGCCAACTGGACGCTGTGGGCGGCGCTGCAGAAGGTGGCTGAGGAAGGTACTGG‑CGTGGTGGTGATCCTGGCCAACCACGAAtcc‑tcc                                       >  5:357998/1‑149 (MQ=255)                                                                                                ggTGCGGGTGCATGTGATTGACCCGCTGCGCGACCTGGTGGGCGCCGAGTACGCCGGCCCCGCCAACTGGACGCTGTGGGCGGCGCTGCAGAAGGTGGCTGAGGAAGGTACTGG‑CGTGGTGGTGATCCTGGCCAACCACGAAtcc‑tcc                                       >  2:338364/1‑148 (MQ=255)                                                                                                 gTGCGGGTGCATGTGATTGACCCGCTGCGCGACCTGGTGGGCGCCGAGTACGCCGGCCCCGCCAACTGGACGCTGTGGGCGGCGCTGCAGAAGGTGGCTGAGGAAGGTACTGG‑CGTGGTGGTGATCCTGGCCAACCACGAAtcc‑tcc                                       >  2:45260/1‑147 (MQ=255)                                                                                                 gTGCGGGTGCATGTCATTGACCCGCTGCGCGACCTGGTGGGGGCCGAGTACGCCGGCCCCGCCAACTGGACGCTGTGGGCGGCGCTGCAGAAGGTGGCTGAGGAAGGTACTGG‑CGTGGTGGTGATCCTTGCCAACCACGAAtcc‑tcc                                       <  8:265444/147‑1 (MQ=255)                                                                                                    cGGGTGCATGTGATTGACCCGCTGCGCGACCTGGTGGGCGCCGAGTACGCCGGCCCCGCCAACTGGACGCTGTGGGCGGCGCTGCAGAAGGTGGCTGAGGAAGGTACTGG‑CGTGGTGGTGATCCTGGCCAACCACGAATCC‑TCCCAGGc                                  <  8:83929/149‑1 (MQ=255)                                                                                                      gttGCATGTGATTGACCCGCTGCGCGACCTGGTGGGCGCCGAGTACGCCGGCCCCGCCAACTGGACGCTGTGGGCGGCGCTGCAGAAGGTGGCTGAGGAAGGTACTGG‑CGTGGTGGTGATCCTGGCCAACCACGAATCC‑TCCCATGCct                                <  7:245820/147‑1 (MQ=255)                                                                                                          cATGTGATTGACCCGCTGCGCGACCTGGTGGGCGCCGAGTACGCCGGCCCCGCCAACTGGACGCTGTGGGCGGCGCTGCAGAAGGTGGCTGAGGAAGGTACTGG‑CGTGGTGGTGATCCTGGCCAACCACGAATCC‑TCCCAGGCcttgc                             <  5:309813/148‑1 (MQ=255)                                                                                                          cATGTGATTGACCCGCTGCGCGACCTGGTGGGCGCCGAGTACGCCGGCCCCGCCAACTGGACGCTGTGGGCGGCGCTGCAGAAGGTGGCTGAGGAAGGTACTGG‑CGTGGTGGTGATCCTCGCCAACCACGAATCC‑TCCCAGGCcttgc                             <  1:213526/148‑1 (MQ=255)                                                                                                           aTGTGATTGACCCGCTGCGCGACCTGGTGGGCGCCGAGTACGCCGGCCCCGCCAACTGGACGCTGTGGGCGGCGCTGCAGAAGGTGGCTGAGGAAGGTACTGG‑CGTGGTGGTGATCCTGGCCAACCACGAAtcc‑tcc                                       <  1:15487/137‑1 (MQ=255)                                                                                                           aTGTGATTGACCCGCTGCGCGACCTGGTGGGCGCCGAGTACGCCGGCCCCGCCAACTGGACGCTGTGGGCGGCGCTGCAGAAGGTGGCTGAGGAAGGTACTGG‑CGTGGTGGTGATCCTGGCCAACCACGAAtcc‑tcc                                       >  2:15487/1‑137 (MQ=255)                                                                                                           aTGTGATTGACCCGCTGCGCGACCTGGTGGGCGCCGAGTACGCCGGCCCCGCCAACTGGACGCTGTGGGCGGCGCTGCAGAAGGTGGCTGAGGAAGGTACTGG‑CGTGGTGGTGATCCTGGCCAACCACGAATCC‑TCCCAGGCcttgctt                           <  4:74902/149‑1 (MQ=255)                                                                                                           aTGTGATTGACCCGCTGCGCGACCTGGTGGGCGCCGAGTACGCCGGCCCCGCCAACTGGACGCTGTGGGCGGCGCTGCAGAAGGTGGCTGAGGAAGGTACTGG‑CGTGGTGGTGATCCTGGCCAACCACGAATCC‑TCCCAGGCcttgctt                           <  1:254700/149‑1 (MQ=255)                                                                                                            tgtgATTGACCCGCTGCGCGACCTGGTGGGCGCCGAGTACGCCGGCCCCGCCAACTGGACGCTGTGGGCGGCGCTGCAGAAGGTGGCTGAGGAAGGTACTGG‑CGTGGTGGTGATc                                                             <  4:122551/115‑1 (MQ=255)                                                                                                            tgtgATTGACCCGCTGCGCGACCTGGTGGGCGCCGAGTACGCCGGCCCCGCCAACTGGACGCTGTGGGCGGCGCTGCAGAAGGTGGCTGAGGAAGGTACTGG‑CGTGGTGGTGATc                                                             >  3:122551/1‑115 (MQ=255)                                                                                                                    aCCCGCTGCGCGACCTGGTGGGCGCCGAGTACGCCGGCCCCGCCAACTGGACGCTGTGGGCGGCGCTGCAGAAGGTGGCTGAGGAAGGTACTGG‑CGTGGTGGTGATCCTGGCCAACCACGAATCC‑TCCCAGGCCTTGCTTGAGCgtgt                   <  6:357998/148‑1 (MQ=255)                                                                                                                     cccGCTGCGCGACCTGGTGGGCGCCGAGTACGCCGGCCCCGCCAACTGGACGCTGTGGGCGGCGCTGCAGAAGGTGGCTGAGGAAGGTACTGG‑CGTGGTGGTGATCCTGGCCAACCACGAATCC‑TCCCAGGCCTTGCTTGAGCGTGTGc                 >  5:279338/1‑149 (MQ=255)                                                                                                                        gCTGCGCGACCTGGTGGGCGCCGAGTACGCCGGCCCCGCCAACTGGACGCTGTGGGCGGCGCTGCAGAAGGTGGCTGAGGAAGGTACTGG‑CGTGGTGGTGATCCTGGCCAACCACGAATCC‑TCCCAGGCCTTGCTTGAGCGTGTGCca               >  7:88806/1‑148 (MQ=255)                                                                                                                          tGCGCGACCTGGTGGGCGCCGAGTACGCCGGCCCCGCCAACTGGACGCTGTGGGCGGCGCTGCAGAAGGTGGCTGAGGAAGGTACTGG‑Cgtg                                                                      <  5:197040/92‑1 (MQ=255)                                                                                                                          tGCGCGACCTGGTGGGCGCCGAGTACGCCGGCCCCGCCAACTGGACGCTGTGGGCGGCGCTGCAGAAGGTGGCTGAGGAAGGTACTGG‑Cgtg                                                                      >  6:197040/1‑92 (MQ=255)                                                                                                                                aCCTGGTGGGCGCCGAGTACGCCGGCCCCGCCAACTGGACGCTGTGGGCGGCGCTGCAGAAGGTGGCTGAGGAAGGTACTGG‑CGTGGTGGTGATCCTGGCCAACCACGAATCCTTCCCAGGCCTTGCTTGAGCGTGTGCCACAACTGac       <  1:242465/149‑1 (MQ=255)                                                                                                                                aCCTGGTGGGCGCCGAGTACGCCGGCCCCGCCAACTGGACGCTGTGGGCGGCGCTGCAGAAGGTGGCTGAGGAAGGTACTGG‑CGTGGTGGTGATCCTGGCCAACCACGAATCC‑TCCCAGGc                                  >  3:341997/1‑121 (MQ=255)                                                                                                                                    ggtggGCGCCGAGTACGCCGGCCCCGCCAACTGGACGCTGTGGGCGGCGCTGCAGAAGGTGGCTGAGGAAGGTACTGG‑CGTGGTGGTGATCCTGGCCAACCACGAATCC‑TCCCAGGCCTTGCTTGAGCGTGTGcc                <  7:145195/135‑1 (MQ=255)                                                                                                                                    ggtggGCGCCGAGTACGCAGGCCCCGCCAACTGGACGCTGTGGGCGGCGCTGCAGAAGGTGGCTGAGGAAGGTACTGG‑CGTGGTGGTGATCCTGGCCAACCACGAATCC‑TCCCAGGCCTTGCTTGAGCGTGTGcc                >  8:145195/1‑135 (MQ=255)                                                                                                                                     gtggGCGCCGAGTACGCCGGCCCCGCCAACTGGACGCTGTGGGCGGCGCTGCAGAAGGTGGCTGAGGAAGGTACTGG‑CGTGGTGGTGATCCTGGCCAACCACGAATCC‑TCCCAGGCCTTGCTTGAGCGTGTGCCACAACTGacccacc  <  2:3447/148‑1 (MQ=255)                                                                                                                                     gtggGCGCCGAGTACGCCGGCCCCGCCAACTGGACGCTGTGGGCGGCGCTGCAGAAGGTGGCTGAGGAAGGTACTGG‑CGTGGTGGTGATCCTGGCCAACCACGAATCC‑TCCCAGGCCTTGCTTGAGCGTGTGCCACAACTGacccacc  <  1:45260/148‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                        GGCACCTTCCGCCTGGTCACCTATGAAGACCGCATCGAAGGTGGCGTGCACATGGCCATGGTCATGGGCGACATTCGCCGCGAACAGCCGACCCTGGTGCGGGTGCATGTGATTGACCCGCTGCGCGACCTGGTGGGCGCCGAGTACGCCGGCCCCGCCAACTGGACGCTGTGGGCGGCGCTGCAGAAGGTGGCTGAGGAAGGTACTGG‑CGTGGTGGTGATCCTGGCCAACCACGAATCC‑TCCCAGGCCTTGCTTGAGCGTGTGCCACAACTGACCCACC  >  NC_002947/4339548‑4339827

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.