| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4389430 = | 32 (0.530) | 6 (0.100) | 6/256 | NT | 16.0% | coding (1311/1956 nt) | PP_3865 | tail protein |
| ? | NC_002947 | 4389463 = | 32 (0.550) | coding (1278/1956 nt) | PP_3865 | tail protein | |||||
GTTCCCAGTTCTTGATGATCAATGCCAGCGGGGCCCAGCCAAACACGCTTTTAATGAATTCCATGAACGGCGTGGTGTAGGCCTTGATCAGCTCCCACAGGGCGCTGAAGAACGGCCCGACCTTCTCCCAGTTGGCGACGATCAGACCGGCC‑G‑CCGCCGCG‑ATCCCCGCGGCGATCAGGCCAATCGGCGTGGCCG‑CGAAGGCCACACCGAGCACCCGCGTGGCCACTGTGGCCGCGAACACC‑GCCGCACGCAGCGCGGTGAAGGCCGCCCCGGCAATGACGATGCCGCG > NC_002947/4389282‑4389570 | gTTCCCAGTTCTTGATGATCAATGCCAGCGGGGCCCAGCCAAACACGCTTTTAATGAATTCCATGAACGGCGTGGTGTAGGCCTTGATCAGCTCCCACAGGGCGCTGAAGAACGGCCCGACCTTCTCCCAGTTGGCGACGATCAGACCg > 8:251429/1‑149 (MQ=255)ccatatggcgcagatgatcagcgacaacccgcagttggtgcgcggcatcgtcattgccggggcggccttcaccgcgctgcgtgcggcggtgttcgcggccacagtggccacgcgggtgctcggtgtggccttcgcggccacgccgattg < 4:80726‑M1/1‑1 (MQ=255) atatggcgcagatgatcagcgacaacccgcagttggtgcgcggcatcgtcattgccggggcggccttcaccgcgctgcgtgcggcggtgttcgcggccacagtggccacgcgggtgctcggtgtggccttcgcggccacgccgattGgc > 2:155266‑M1/147‑149 (MQ=255) cccAGTTCTTGATGATCAATTCCTGCGGGGCCCAGCCAAACACGCTTTTAATGAATTCCATGAACGGCGGGGTGTAGGCCTTGATGAGCTCCCACAGGGCGCTGAAGAACGGCCCGACCTTCTCCCAGTTGGCGACGATCAGACCGgc < 5:48522/148‑1 (MQ=255) ccAGTTCTTGATGATCAATGCCAGCGGGGCCCAGCCAAACACGCTTTTAATGAATTCCATGAACGGCGTGGTGTAGGCCTTGATCAGCTCCCACAGGGCGCTGAAGAACGGCCCGACCTTCTCCCAGTTGGCGACGATCAGACCGgcc < 7:135156/148‑1 (MQ=255) aGTTCTTGATGATCAATGCCAGCGGGGCCCAGCCAAACACGCTTTTAATGAATTCCATGAACGGCGTGGTGTAGGCCTTGATCAGCTCCCACAGGGCGCTGAAGAACGGCCCGACCTTCTCCCAGTTGGCGACGATCAGACCGgcc‑g‑cc < 5:261932/149‑1 (MQ=255) gatCAATGCCAGCGGGGCCCAGCCAAACACGCTTTTAATGAATTCCATGAACGGCGTGGTGTAGGCCTTGATCAGCTCCCACAGGGCGCTGAAGAACGGCCCGACCTTCTCCCAGTTGGCGACGATCAGACCGGCC‑G‑CCGCCGCG‑ATcc > 1:274557/1‑149 (MQ=255) tcagcgacaacccgcagttggtgcgcggcatcgtcattgccggggcggccttcaccgcgctgcgtgcggcggtgttcgcggccacagtggccacgcgggtgctcggtgtggccttcgcggccacgccgattGGCC‑G‑CCGCCGCG‑ATccc < 7:210598‑M1/18‑1 (MQ=255) cGGGGCCCAGCCAAACACGCTTTTAATGAATTCCATGAACGGCGTGGTGTAGGCCTTGATCAGCTCCCACAGGGCGCTGAAGAACGGCCCGACCTTCTCCCAGTTGGCGACGATCAGACCGGCC‑G‑CCGCCGCG‑ATCCCCGCGGCGATCa < 2:142730/149‑1 (MQ=255) gggCCCAGCCAAACACGCTTTTAATGAATTCCATGAACGGCGTGGTGTAGGCCTTGATCAGCTCCCACAGGGCGCTGAAGAACGGCCCGACCTTCTCCCAGTTGGCGACGATCAGACCGGCC‑G‑CCGCCGCG‑ATCCCCGCGGCGATCAgg < 7:166896/149‑1 (MQ=255) gcagttggtgcgcggcatcgtcattgccggggcggccttcaccgcgctgcgtgcggcggtgttcgcggccacagtggccacgcgggtgctcggtgtggccttcgcggccacgccgattGGCCTGACCGCCGCG‑ATCCCCGCGGCGATCa > 8:82391‑M1/119‑149 (MQ=255) ggCCCAGCCAAACACGCTTTTAATGAATTCCATGAACGGCGTGGTGTAGGCCTTGATCAGCTCCCACAGGGCACTGAAGAACGGCCCGACCTTCTCCCAGTTGGCGACGATCAGACCGGCC‑G‑CCGCCGCG‑ATCCCCGCGGCGATCAGGc < 5:261211/149‑1 (MQ=255) gttggtgcgcggcatcgtcattgccggggcggccttcaccgcgctgcgtgcggcggtgttcgcggccacagtggccacgcgggtgctcggtgtggccttcgcggccacgccgattGGCCTGACCGCCGCG‑ATCCCCGCGGCGATCAGGc > 3:299135‑M1/116‑149 (MQ=255) gtgcgcggcatcgtcattgccggggcggccttcaccgcgctgcgtgcggcggtgttcgcggccacagtggccacgcgggtgctcggtgtggccttcgcggccacgccgattGGCC‑G‑CCGCCGCG‑ATCCCCGCGGCGATCAGGCCAATc > 8:210598‑M1/112‑148 (MQ=255) aaaCACGCTTTTAATGAATTCCATGAACGGCGTGGTGTAGGCCTTGATCAGCTCCCACAGGGCGCTGAAGAACGGCCCGACCTTCTCCCAGTTGGCGACGATCAGACCGGCC‑G‑CCGCCGCGCATCCCCGCGGCGATCAGGCCAATCGGc < 1:17442/149‑1 (MQ=255) aaCACGCTTTTAATGAATTCCATGAACGGCGTGGTGTAGGCCTTGATCAGCTCCCACAGGGCGCTGAAGAACGGCCCGACCTTCTCCCAGTTGGCGACGATCAGACCGGCC‑G‑CCGCCGCG‑ATCCCCGCGGCGATCAGGCCAATCGGCGt < 7:251429/149‑1 (MQ=255) aaCACGCTTTTAATGAATTCCATGAACGGCGTGGTGTAGGCCTTGATCAGCTCCCACAGGGCGCTGAAGAACGGCCCGACCTTCTCCCAGTTGGCGACGATCAGACCGGCC‑G‑CCGCCGCG‑ATCCCCGCGGCGATCAGGCCAATCGGCGt < 7:302681/149‑1 (MQ=255) aaCACGCTTTTAATGAATTCCATGAACGGCGTGGTGTAGGCCTTGATCAGCTCCCACAGGGCGCTGAAGAACGGCCCGACCTTCTCCCAGTTGGCGACGATCAGACCGGCC‑G‑CCGCCGCG‑ATCCCCGCGGCGATCAGGCCAATCGGCGt < 7:36529/149‑1 (MQ=255) gCTTTTAATGAATTCCATGAACGGCGTGGTGTAGGCCTTGATCAGCTCCCACAGGGCGCTGAAGAACGGCCCGACCTTCTCCCAGTTGGCGACGATCAGACCGGCC‑G‑CCGCCGCG‑ATCCCCgcggc < 6:198547/126‑1 (MQ=255) gCTTTTAATGAATTCCATGAACGGCGTGGTGTAGGCCTTGATCAGCTCCCACAGGGCGCTGAAGAACGGCCCGACCTTCTCCCAGTTGGCGACGATCAGACCGGCC‑G‑CCGCCGCG‑ATCCCCgcggc > 5:198547/1‑126 (MQ=255) ttttAATGAATTCCATGAACGGCGTGGTGTAGGCCTTGATCAGCTCCCACAGGGCGCTGAAGAACGGCCCGACCTTCTCCCAGTTGGCGACGATCAGACCGGCC‑G‑CCGCCGCG‑ATCCCCGCGGCGATCAGGCCAATCGGCGTGGCcg‑c > 1:124147/1‑148 (MQ=255) tAATGAATTCCATGAACGGCGTGGTGTAGGCCTTGATCAGCTCCCACAGGGCGCTGAAGAACGGCCCGACCTTCTCCCAGTTGGCGACGATCAGACCGGCC‑G‑CCGCCGCG‑ATCCCCGCGGCGATCAGGCCAATCGGCGTGGCCG‑CGaa < 2:124147/148‑1 (MQ=255) aaTGAATTCCATGAACGGCGTGGTGTAGGCCTTGATCAGCTCCCACAGGGCGCTGAAGAACGGCCCGACCTTCTCCCAGTTGGCGACGATCAGACCGGCC‑G‑CCGCCGCG‑CACCCCCCGGCGCTCAGGCCCATCGGCGTGGCCG‑CGAAgg > 7:153889/1‑149 (MQ=255) aTGAATTCCATGAACGGCGTGGTGTAGGCCTTGATCAGCTCCCACAGGGCGCTGAAGAACGGCCCGACCTTCTCCCAGTTGGCGACGATCAGACCGGCC‑G‑CCGCCGCG‑ATCCCCGCGGGGATCAGGGCAATACGCGTGGCCG‑CGCAGGc > 1:295197/1‑149 (MQ=255) ccATGAACGGCGTGGTGTAGGCCTTGATCAGCTCCCACAGGGCGCTGAAGAACGGCCCGACCTTCTCCCAGTTGGCGACGATCAGACCGGCC‑G‑CCGCCGCG‑ATCCCCGCGGCGATCAGGCCAATCGGCGTGGCCG‑CGAAGGCCACAcc < 2:274557/148‑1 (MQ=255) aTGAACGGCGTGGTGTAGGCCTTGATCAGCTCCCACAGGGCGCTGAAGAACGGCCCGACCTTCTCCCAGTTGGCGACGATCAGACCGGCC‑G‑CCGCCGCG‑ATCCCCGCGGCGATCAGGCCAATCGGCGTGGCCG‑CGAAGGCCACACCGAg > 4:309141/1‑149 (MQ=255) tcaccgcgctgcgtgcggcggtgttcgcggccacagtggccacgcgggtgctcggtgtggccttcgcggccacgccgattGGCC‑G‑CCGCCGCG‑ATCCCCGCGGCGATCAgg > 4:222867‑M1/81‑111 (MQ=255) tcaccgcgctgcgtgcggcggtgttcgcggccacagtggccacgcgggtgctcggtgtggccttcgcggccacgccgattGGCC‑G‑CCGCCGCG‑ATCCCCGCGGCGATCAgg < 3:222867‑M1/31‑1 (MQ=255) gCCTTGATCAGCTCCCACAGGGCGCTGAAGAACGGCCCGACCTTCTCCCAGTTGGCGACGATCAGACCGGCC‑G‑CCGCCGCG‑ATCCCCGCGGCGATCAGGCCAATCGGCGTGGCCG‑CGAAGGCCACACCGAGCACCCGCGTGGCCACtgt > 5:277704/1‑149 (MQ=255) aTCAGCTCCCACAGGGCGCTGAAGAACGGCCCGACCTTCTCCCAGTTGGCGACGATCAGACCGGCC‑G‑CCGCCGCG‑ATCCCCGCGGCGATCAGGCCAATCGGCGTGGCCG‑CGAAGGCCACACCGAGCACCCGCGTGGCCACTGTGGCcgc < 1:176348/149‑1 (MQ=255) cAGCTCCCACAGGGCGCTGAAGAACGGCCCGACCTTCTCCCAGTTGGCGACGATCAGACCGGCC‑G‑CCGCCGCG‑ATCCCCGCGGCGATCAGGCCAATCGGCGTGGCCG‑CGAAGGCCACACCGAGCACCCGCGTGGCCACTGTGGCcgcg > 7:28566/1‑148 (MQ=255) aGCTCCCACAGGGCGCTGAAGAACGGCCCGACCTTCTCCCAGTTGGCGACGATCAGACCGGCC‑G‑CCGCCGCG‑ATCCCCGCGGCGATCAGGCCAATCGGCGTGGCCG‑CGAAGGCCACACCGAGCACCCGCGTGGCCACTGTGGCCGCGaa < 5:297615/149‑1 (MQ=255) cTCCCACAGGGCGCTGAAGAACGGCCCGACCTTCTCCCAGTTGGCGACGATCAGACCGGCC‑G‑CCGCCGCG‑ATCCCCGCGGCGATCAGGCCAATCGGCGTGGCCG‑CGAAGGCCACACCGAGCACCCGCGTGGCCACTGTGGCCGCGAaca > 5:116478/1‑149 (MQ=255) acaGGGCGCTGAAGAACGGCCCGACCTTCTCCCAGTTGGCGACGATCAGACCGGCC‑G‑CCGCCGCG‑ATCCCCGCGGCGATCAGGCCAATCGGCGTGGCCG‑CGAAGGCCACACCGAGCACCCGCGTGGCCACTGTGGCCGCGAACAcc‑gcc < 3:137417/149‑1 (MQ=255) tgcgcTGAATAACGGCCCGACCTTCTCCCAGTTGGCGACGATCAGACCGGCA‑G‑CCGCCGCG‑ATCCCCGCGGCGATCAGGCCAATCGGCGTGGCCG‑CGAAGGCCACACCGAGCACCCGCGTGGCCACTGTGGCCGCGAACACC‑GCcgcac < 8:276896/148‑1 (MQ=255) aagaaCGGCCCGACCTTCTCCCAGTTGGCGACGATCAGACCGGCC‑G‑CCGCCGCG‑ATCCCCGCGGCGATCAGGCCAATCGGCGTGGCCG‑CGAAGGCCACACCGAGCACCCGCGTGGCCACTGTGGCCGCGAACACC‑GCCGCACGCAgcgc < 6:277704/149‑1 (MQ=255) aCCTTCTCCCAGTTGGCGACGATCAGACCGGCC‑G‑CCGCCGCG‑ATCCCCGCGGCGCTCAGGCCAATAGGCGTGGCCG‑CGGAGGCCCCACCGAGCCCCCGCGGGGGCCCAGGGGGCGCCCACACC‑CCCGCCCGCCGCGCGGGGAAGgcccc > 2:296795/1‑147 (MQ=255) aCCTTCTCCCAGTTGGCGACGATCAGACCGGCC‑G‑CCGCCGCG‑ATACCCGCGGCGATCAGGCCAATCGGCGTGGCCG‑CGAAGGCCACACCGAGCACCCGCGTGGCCACTGTGGCCGCGAACACA‑GCCGCACGCAGCGCGGTGAAGgccgc > 5:375222/1‑149 (MQ=255) ctcCCAGTTGGCGACGATCAGACCGGCC‑G‑CCGCCGCG‑ATCCCCGCGGCGATCAGGCCAATCGGCGTGGCCG‑CGAAGGCCACACCGAGCACCCGCGTGGCCACTGTGGCCGCGAACACCAGCCGCACGCAGCGCGGTGAAGGCCGccc < 1:214249/147‑1 (MQ=255) ccAGTTGGCGACGATCAGACCGGCC‑G‑CCGCCGCG‑ATCCCCGCGGCGATCAGGCCAATCGGCGTGGCCG‑CGAAGGCCACACCGAGCACCCGCGTGGCCACTGTGGCCGCGAACACC‑GCCGCACGCAGCGCGGTGAAGGCCGCCCCgg < 6:116478/146‑1 (MQ=255) cgacgaTCAGACCGGCC‑G‑CCGCCGCG‑ATCCCCGCGGCGATCAGGCCAATCGGCGTGGCCG‑CGAAGGCCACACCGAGCACCCGCGTGGCCACTGTGGCCGCGAACACC‑GCCGCACGCAGCGCGGTGAAGGCCGCCCCGGCAATGACGATg > 3:80726/1‑149 (MQ=255) gacgaTCAGACCGGCC‑G‑CCGCCGCA‑AACCCCGCCGCGATCAAGCCAAAACCCCTGGACGAGGACGACCAACCCCCCCACCC‑CGAGGCCACATTGGCCGCGAACACC‑CACGCAAGCAGCGCGCTGAAGCCCCACCCGGCAAAGCCGAttc > 6:147084/1‑147 (MQ=255) aTCAGACCGGCC‑G‑CCGCCGCG‑ATCCCCGCGGCGATCAGGCCAATCGGCGTGGCCG‑CGAAGGCCACACCGAGCACCCGCGTGGCCACTGTGGCCGCGAACACC‑GCCGCACGCAGCGCGGTGAAGGCCGCCCCGGCAATGACGATGCcgcg < 8:153889/149‑1 (MQ=255) ccGGCC‑G‑CCGCCGCG‑ATCCCCGCGGCGATCAGGCCAATCGGCGTGGCCG‑CGAAGGCCACACCGAGCACCCGCGTGGCCACTGTGGCCGCGAACACC‑GCCGCACGCAGCGCGGTGAAGGCCGCCCCg < 1:68983/126‑1 (MQ=255) ccGGCC‑G‑CCGCCGCG‑ATCCCCGCGGCGATCAGGCCAATCGGCGTGGCCG‑CGAAGGCCACACCGAGCACCCGCGTGGCCACTGTGGCCGCGAACACC‑GCCGCACGCAGCGCGGTGAAGGCCGCCCCg > 2:68983/1‑126 (MQ=255) | GTTCCCAGTTCTTGATGATCAATGCCAGCGGGGCCCAGCCAAACACGCTTTTAATGAATTCCATGAACGGCGTGGTGTAGGCCTTGATCAGCTCCCACAGGGCGCTGAAGAACGGCCCGACCTTCTCCCAGTTGGCGACGATCAGACCGGCC‑G‑CCGCCGCG‑ATCCCCGCGGCGATCAGGCCAATCGGCGTGGCCG‑CGAAGGCCACACCGAGCACCCGCGTGGCCACTGTGGCCGCGAACACC‑GCCGCACGCAGCGCGGTGAAGGCCGCCCCGGCAATGACGATGCCGCG > NC_002947/4389282‑4389570 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |