New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4768559	44 (0.730)	3 (0.050)	3/252	NT	6.6%	coding (253/957 nt)	PP_4218	lipase/esterase family protein
	?	NC_002947	= 4768582	43 (0.750)					coding (230/957 nt)	PP_4218	lipase/esterase family protein

GCTGTCGGGAAACGCCACTGCGGCGCCAGCCGGTAGCCCACGGCAATCACCGGCACCCCGGCATCCTGCGCCAGGTTCCAGCACAGCGTGTCATGCGAATCGAGGCTGCCCACCACGTAGCCGCCGCCATGCAGGTACAGCAGCGCCGCGCCGGCCAGTGCAGGGTCGGCCTGCGGCGGGCGGTACAAGCGCACCGGCAAGGTATGGCCATCGCGGGTGGTCAACGAAAGGTCG‑CTGATGCAGTCCGGCTCGTCGGCCTTGCCCGCAATCAGCGCCGAGGACTCTTCGAACTGGCG  >  NC_002947/4768411‑4768706                                                                                                                                                     |                                                                                                                                                     gCTGTCGGGAAACGCCACTGCGGCGCCAGCCGGTAGCCCACGGCAATCACCGGCACCCCGGCATCCTGCGCCAGGTTCCAGCACAGCGTGTCATGCGAATCGAGGCTGCCCACCACGTAGCCGCCGCCATGCAGGTACAGCAGCGCCGC                                                                                                                                                      >  8:258558‑M1/1‑149 (MQ=255)              gCCACTGCGGCGCCAGCCGGTAGCCCACGGCAATCACCGGCACCCCGGCATCCTGCGCCAGGTTCCAGCACAGCGTGTCATGCGAATCGAGGCTGCCCACCACGTAGCCGCCGCCATGCAGGTACAGCAGCGCCGCGCCGGCCAGTg                                                                                                                                           >  5:340871/1‑147 (MQ=255)              gCCACTGCGGCGCCAGCCGGTAGCCCACGGCAATCACCGGCACCCCGGCATCCTGCGCCAGGTTCCAGCACAGCGTGTCATGCGAATCGAGGCTGCCCACCACGTAGCCGCCGCCATGCAGGTACAGCAGCGCCGCGCCGGCCAGTGCa                                                                                                                                         <  3:31194/149‑1 (MQ=255)               ccACTGCGGCGCCAGCCGGTAGCCCACGGCAATCACCGGCACACCGGCATCCTGCTCCAGGTTCCAGCAGAGCGTGTCATGCGAATCGAGGCTGCCCACCACGTAGCCGCCGCCATGCAGGTACAGCAGCGCCGCGCCGGCCAGTGCAg                                                                                                                                        <  8:346082/149‑1 (MQ=255)                cACTGCGGCGCCAGCCGGTAGCCCACGGCAATCACCGGCACCCCGGCATCCTGCGCCAGGTTCCAGCACAGCGTGTCATGCGAATCGAGGCTGCCCACCACGTAGCCGCCGCCATGCAGGTACAGCAGCGCCGCGCCGGCCAGTGCAgg                                                                                                                                       >  4:328756/1‑149 (MQ=255)                      ggcgCCAGCCGGTAGCCCACGGCAATCACCGGCACCCCGGCATCCTGCGCCAGGTTCCAGCACAGCGTGTCATGCGAATCGAGGCTGCCCACCACGTAGCCGCCGCCATGCAGGTACAGCAGCGCCGCGCCGGCCAGTGCAGGGTCGGc                                                                                                                                 >  6:302111/1‑149 (MQ=255)                           cAGCCGGTAGCCCACGGCAATCACCGGCACCCCGGCATCCTGCGCCAGGTTCCAGCACAGCGTGTCATGCGAATCGAGGCTGCCCACCACGTAGCCGCCGCCATGCAGGTACAGCAGCGCCGCGCCGGCCAGTGCAGGGTCGGCCTgcg                                                                                                                            >  5:327341‑M2/1‑146 (MQ=255)                               cGGTAGCCCACGGCAATCACCGGCACCCCGGCATCCTGCGCCAGGTTCCAGCACAGCGTGTCATGCGAATCGAGGCTGCCCACCACGTAGCCGCCGCCATGCAGGTACAGCAGCGCCGCGCCGGCCAGTGCAGGGTCGGCCTGcggcgg                                                                                                                        <  2:335458/149‑1 (MQ=255)                                    gCCCACGGCAATCACCGGCACCCCGGCATCCTGCGCCAGGTTCCAGCACAGCGTGTCATGTGAATCGAGGCTGCCCACCACGTAGCCGCCGCCATGCAGGTACAGCAGCGCCGCGCCGGCCAGTGCAGGGTCGGCCTGCGgcgggcgg                                                                                                                    >  5:131539/1‑148 (MQ=255)                                    gCCCACGGCAATCACCGGCACCCCGGCATCCTGCGCCAGGTTCCAGCACAGCGTGTCATGCGAATCGAGGCTGCCCACCACGTAGCCGCCGCCATGCAGGTACAGCAGCGCCGCaggccgaccctgcactggccggcgcggcgctgct                                                                                                                    <  1:38122‑M1/148‑35 (MQ=255)                                     cccACGGCAATCACCGGCACCCCGGCATCCTGCGCCAGGTTCCAGCACAGCGTGTCATGCGAATCGAGGCTGCCCACCACGTAGCCGCCGCCATGCAGGTACAGCAGCGCCGCGCCGGCCAGTGCAGGGTCGGCCTGCGGCGGGCGGTa                                                                                                                  <  2:145496/149‑1 (MQ=255)                                        aCGGCAATCACCGGCACCCCGGCATCCTGCGCCAGGTTCCAGCACAGCGTGTCATGCGAATCGAGGCTGCCCACCACGTAGCCGCCGCCATGCAGGTACAGCAGCGCCGCGCCGGCCAGTGCAGGGTCGGCCTGCGGCGGGCGGTAc                                                                                                                 >  1:223246/1‑147 (MQ=255)                                        aCGGCAATCACCGGCACCCCGGCATCCTGCGCCAGGTTCCAGCACAGCGTGTCATGCGAATCGAGGCTGCCCACCACGTAGCCGCCGCCATGCAGGTACAGCAGCGCCGCGCCGGCCAGTGCAGGGTCGGCCTGCGGCGGGCGGTACaa                                                                                                               >  4:14059/1‑149 (MQ=255)                                        aCGGCAATCACCGGCACCCCGGCATCCTGCGCCAGGTTCCAGCACAGCGTGTCATGCGAATCGAGGCTGCCCACCACGTAGCCGCCGCCATGCAGGTACAGCAGCGCCGCGCCGGCCAGTGCAGGGTCGGCCTGCGGCGGGCGGTACaa                                                                                                               <  7:258558/149‑1 (MQ=255)                                          ggCAATCACCTCCACCCCGGCATCCTGCGCCAGGGTCCAGCACAGCGTGTCATGCGAATCGAGGCTGCCCACCACGTAGCCGCCGCCATGCAGGTACAGCAGCGCCGCGCCGGCCAGTGCAGGGTCGGCCTGCGGCGGGCTGTACAAgc                                                                                                             <  7:115579/149‑1 (MQ=255)                                             aaTCACCGGCACCCCGGCATCCTGCGCCAGGTTCCAGCACAGCGTGTCATGCGAATCGAGGCTGCCCACCACGTAGCCGCCGCCATGCAGGTACAGCAGCGCCGCGCCGGCCAGTGCAgg                                                                                                                                       >  3:248462/1‑120 (MQ=255)                                             aaTCACCGGCACCCCGGCATCCTGCGCCAGGTTCCAGCACAGCGTGTCATGCGAATCGAGGCTGCCCACCACGTAGCCGCCGCCATGCAGGTACAGCAGCGCCGCGCCGGCCAGTGCAgg                                                                                                                                       <  4:248462/120‑1 (MQ=255)                                             aaTCACCGGCACCCCGGCATCCTGCGCCAGGTTCCAGCACAGCGTGTCATGCGAATCGAGGCTGCCCACCACGTAGCCGCCGCCATGCAGGTACAGCAGCGCCGCGCCGGCCAGTGCAGGGTCGGCCTGCGGCGGGCGGTACAAGCGCa                                                                                                          >  6:59238/1‑149 (MQ=255)                                               tCACCGGCACCCCGGCATCCTGCGCCAGGTTCCAGCACAGCGTGTCATGCGAATCGAGGCTGCCCACCACGTAGCCGCCGCCATGCAGGTACAGCAGCGCCGCGCCGGCCAGTGCAGGGTCGGCCTGCGGCGGGCGGTACAAGCGCAcc                                                                                                        <  3:52281/149‑1 (MQ=255)                                               tCACCGGCACCCCGGCATCCTGCGCCAGGTTCCAGCACAGCGTGTCATGCGAATCGAGGCTGCCCACCACGTAGCCGCCGCCATGCAGGTACAGCAGCGCCGCGCCGGCCAGTGCAGGGTCGGCCTGCGGCGGGCGGTACAAGCGCAcc                                                                                                        <  5:302111/149‑1 (MQ=255)                                                    ggCACCCCGGCATCCTGCGCCAGGTTCCAGCACAGCGTGTCATGCGAATCGAGGATGCCCACCACGTAGCCGCCGCCATGGAGGTACAGCAGCGCTGCGCCGGCCAGTGCAGGGTCGGCCTGCGGCGGGCGGTACAAGCGCACCGGCaa                                                                                                   <  4:229606/149‑1 (MQ=255)                                                       aCCCCGGCATCCTGCGCCAGGTTCCAGCACAGCGTGTCATGCGAATCGAGGCTGCCCACCACGTAGCCGCCGCCATGCAGGTACAGCAGCGCCGCGCCGGCCAGTGCAGGGTCGGCCTGCGGCGGGCGGTACAAGCGCACCGGCAAGGt                                                                                                <  1:192674/149‑1 (MQ=255)                                                         cccGGCATCCTGCGCCAGGTTCCAGCACAGCGTGTCATGCGAATCGAGGCTGCCCACCACGTAGCCGCCGCCATGCAGGTACAGCAGCGCCGCGCCGGCCAGTGCAGGGTCGGCCTGCGGCGGGCGGTACaa                                                                                                               <  3:306373/132‑1 (MQ=255)                                                         cccGGCATCCTGCGCCAGGTTCCAGCACAGCGTGTCATGCGAATCGAGGCTGCCCACCACGTAGCCGCCGCCATGCAGGTACAGCAGCGCCGCGCCGGCCAGTGCAGGGTCGGCCTGCGGCGGGCGGTACaa                                                                                                               >  4:306373/1‑132 (MQ=255)                                                                     cgcCAGGTTCCAGCACAGCGTGTCATGCGAATCGAGGCTGCCCACCACGTAGCCGCCGCCATGCAGGTACAGCAGCGCCGCGCCGGCCAGTGCAGGGTCGGCCTGCGGCGGGCGGTACAAGCGCACCGGCAAGGTATGGCCATCGCgg                                                                                   <  3:197100/148‑1 (MQ=255)                                                                      gcCAGGTTCCAGCACAGCGTGTCATGCGAATCGAGGCTGCCCACCACGTAGCCGCCGCCATGCAGGTACAGCAGCGCCGCGCCGGCCAGTGCAGGGTCGGCCTGCGGCGGGCGGTACAAGCGCACCGGCAAGGTATGGCCATCGCGggt                                                                                 >  5:326606/1‑149 (MQ=255)                                                                       ccAGGTTCCAGCACAGCGTGTCATGCGAATCGAGGCTGCCCACCACGTAGCCGCCGCCATGCAGGTACAGCAGCGCCGCGCCGGCCAGTGCAGGGTCGGCCTGCGGCGGGCGGTACAAGCGCACCGGCAAGGTATGGCCATCGCGggtg                                                                                <  5:300311/149‑1 (MQ=255)                                                                            ttCCAGCACAGCGTGTCATGCGAATCGAGGCTGCCCACCACGTAGCCGCCGCCATGCAGGTACAGCAGCGCCGCGCCGGCCAGTGCAGGGTCGGCCTGCGGCGGGCGGTACAAGCGCACCGGCAAGGTATGGCCATCGCGGGTGGTCaa                                                                           <  2:357309/149‑1 (MQ=255)                                                                                       cgggtCATGCGCATCGACGCTGCCCACCACGTAGCCGCCGCCATGCAGGTACAGCAGCGCCGCGCCGGCCAGTGCAGGGTCGGCCTGCGGCGGGCGGTACAAGCGCACCGGCAAGGTATGGCCATCGCGGGTGGTCAACGAAAGGTCG‑c                                                               <  4:10616/146‑1 (MQ=255)                                                                                       cGTGTCATGTGAATCGAGGCTGCCCACCACGTAGCCGCCGCCATGCAGGTACAGCAGCGCCGCGCCGGCCAGTGCAGGGTCGGCCTGCGGCGGGCGGTACAAGCGCACCGGCAAGGTATGGCCATCGCGGGTGGTCAACGAAAGGTCG‑c                                                               <  6:131539/149‑1 (MQ=255)                                                                                           tCATGCGAATCGAGGCTGCCCACCACGTAGCCGCCGCCATGCAGGTACAGCAGCGCCGCGCCGGCCAGTGCAGGGTCGGCCTGCGGCGGGCGGTACAAGCGCACCGGCAAGGTATGGCCATCGCGGGTGGTCAACGAAAGGTCG‑CTGAt                                                           >  3:87579/1‑149 (MQ=255)                                                                                             aTGCGAATCGAGGCTGCCCACCACGTAGCCGCCGCCATGCAGGTACAGCAGCGCCGCGCCGGCCAGTGCAGGGTCGGCCTGCGGCGGGCGGTACAAGCGCACCGGCAAGGTATGGCCATCGCGGGTGGTCAACGAAAGGTCG‑CTGATg                                                          >  7:353469/1‑148 (MQ=255)                                                                                              tGCGAATCGAGGCTGCCCACCACGTAGCCGCCGCCATGCAGGTACAGCAGCGCCGCGCCGGCCAGTGCAGGGTCGGCCTGCGGCGGGCGGTACAAGCGCACCGGCAAGGTATGGCCATCGCGGGTGGTCAACGAAAGGTCG‑CTGATg                                                          >  3:284139/1‑147 (MQ=255)                                                                                              tGCGAATCGAGGCTGCCCACCACGTAGCCGCCGCCATGCAGGTACAGCAGCGCCGCGCCGGCCAGTGCAGGGTCGGCCTGCGGCGGGCGGTACAAGCGCACCGGCAAGGTATGGCCATCGCGGGTGGTCAACGAAAGGTCG‑CTGATg                                                          >  4:315530/1‑147 (MQ=255)                                                                                               gCGAATCGAGGCTGCCCACCACGTAGCCGCCGCCATGCAGGTACAGCAGCGCCGCaggccgaccctgcactggccggcgcggcgctgctgtac                                                                                                                >  4:331078‑M1/1‑55 (MQ=255)                                                                                               gCGAATCGAGGCTGCCCACCACGTAGCCGCCGCCATGCAGGTACAGCAGCGCCGCaggccgaccctgcactggccggcgcggcgctgctgtac                                                                                                                <  3:331078‑M1/93‑39 (MQ=255)                                                                                                          cTGCCCACCACGTAGCCGCCGCCATGCAGGTACAGCAGCGCCGCGCCGGCCAGTGCAGGGTCGGCCTGCGGCGGGCGGt                                                                                                                   <  6:26460/79‑1 (MQ=255)                                                                                                                 ccacGTAGCCGCCGCCATGCAGGTACAGCAGCGCCGCGCCGGCCAGTGCAGGGTCGGCCTGCGGCGGGCGGTACAAGCGCACCGGCAAGGTATGGCCATCGCGGGTGGTCAACGAAAGGTCG‑CTGATGCAGTCCGGCTCGTCGGCCTTg                                     <  5:383362/149‑1 (MQ=255)                                                                                                                  cacGTAGCCGCCGCCATGCAGGTACAGCAGCGCCGCGCCGGCCAGTGCAGGGTCGGCCTGCGGCGGGCGGTACAAGCGCACCGGCAAGGTATGGCCATCGCGGGTGGTCAACGAAAGGTCG‑CTGATGCAGTCCGGCTCGTCGGCCTTGc                                    <  3:315530/149‑1 (MQ=255)                                                                                                                  cacGTAGCCGCCGCCATGCAGGTACAGCAGCGCCGCGCCGGCCAGTGCAGGGTCGGCCTGCGGCGGGCGGTACAAGCGCACCGGCAAGGTATGGCCATCGCGGGTGGTCAACGAAAGGTCG‑CTGATGCAGTCCGGCTCGTCGGCCTTGc                                    <  2:184476/149‑1 (MQ=255)                                                                                                                   acGTAGCCGCCGCCATGCAGGTACAGCAGCGCCGCGCCGGCCAGTGCAGGGTCGGCCTGCGGCGGGCGGTACAAGCGCACCGGCAAGGTATGGCCATCGCGGGTGGTCAACGAAAGGTCG‑CTGATGCAGTCCGGCTCGTCGGCCTTGcc                                   >  5:256344/1‑149 (MQ=255)                                                                                                                    cGTAGCCGCCGCCATGCAGGTACAGCAGCGCCGCGCCGGCCAGTGCAGGGTCGGCCTGCGGCGGGCGGTACAAGCGCACCGGCAAGGTATGGCCATCGCGGGTGGTCAACGAAAGGTCG‑CTGATGCAGTCCGGCTCGTCGGCCTTGccc                                  <  3:328756/149‑1 (MQ=255)                                                                                                                        gccgccgccATGCAGGTACAGCAGCGCCGCGCCGGCCAGTGCAGGGTCGGCCTGCGGCGGGCGGTACAAGCGCACCGGCAAGGTATGGCCATCGCGGGTGGTCAACGAAAGGTCG‑CTGATGCAGTCCGGCTCGTCGGCCTTGCCCGCaa                              <  3:14059/149‑1 (MQ=255)                                                                                                                          cgccgccATGCAGGTACAGCAGCGCCGCGCCGGCCAGTGCAGGGTCGGCCTGCGGCGGGCGGTACAAGCGCACCGGCAAGCTATGGCCATCGCGGGTGGTCAACGAAAGGTCG‑CTGATGCAGTCCGGCTCGTCGGCCTTGCCCGCAAt                             >  2:317245/1‑148 (MQ=255)                                                                                                                             cgccATGCAGGTACAGCAGCGCCGCGCCGGCCAGTGCAGGGTCGGCCTGCGGCGGGCGGTACAAGCGCACCGGCAAGGTATGGCCATCGCGGGTGGTCAACGAAAGGAAGAGTCATGCAGTCCGCCTCTACGGCCTTGCCCGCAATCac                          >  1:315911/1‑148 (MQ=255)                                                                                                                                       gTACAGCAGCGCCGCGCCGGCCAGTGCAGGGTCGGCCTgcggcgctgctgtacctgcatggcggcggctacgtggtgggcagcctcgattcgc                                                                        >  4:331078‑M2/1‑38 (MQ=255)                                                                                                                                       gTACAGCAGCGCCGCGCCGGCCAGTGCAGGGTCGGCCTgcggcgctgctgtacctgcatggcggcggctacgtggtgggcagcctcgattcgc                                                                        <  3:331078‑M2/93‑56 (MQ=255)                                                                                                                                           agcagcGCCGCGCCGGCCAGTGCAGGGTCGGCCTgcggcgctgctgtacctgcatggcggcggctacgtggtgggcagcctcgattcgcatgacacgctgtgctggaacctggcgcaggatgccggggtgccggtgattgccgtgggc             <  1:38122‑M2/148‑115 (MQ=255)                                                                                                                                           agcagcGCCGCGCCGGCCAGTGCAGGGTCGGCCTGCGGCGGGCGGTACAAGCGCACCGGCAAGGTATGGCCATCGCGGGTGGTCAACGAAAGGTCG‑CTGATGCAGTCCGGCTCGTCGGCCTTGCCCGCAATCAGCGCCGAGGACTCTTc           >  7:183254/1‑149 (MQ=255)                                                                                                                                           agcagcGCCGCGCCGGCCAGTGCAGGGTCGGCCTGCGGCGGGCGGTACAAGCGCACCGGCAAGGTATGGCCATCGCGGGTGGTCAACGAAAGGTCG‑CTGATGCAGTCCGGCTCGTCGGCCTTGCCCGCAATCAGCGCCGAGGACTCTTc           >  8:233671/1‑149 (MQ=255)                                                                                                                                            gcagcGCCGCGCCGGCCAGTGCAGGGTCGGCCTGCGGCGGGCGGTACAAGCGCACCGGCAAGGTATGGCCATCGCGGGTGGTCAACGAAAGGTCG‑CTGATGCAGTCCGGCTCGTCGGCCTTGCCCGCAATCAGCGCCGAGGACTCTTc           >  8:254325/1‑148 (MQ=255)                                                                                                                                            gcagcGCCGCGCCGGCCAGTGCAGGGTCGGCCTGCGGCGGGCGGTACAAGCGCACCGGCAAGGTATGGCCATCGCGGGTGGTCAACGAAAGGTCG‑CTGATGCAGTCCGGCTCGTCGGCCTTGCCCGCAATCAGCGCCGAGGACTCTTCg          <  6:340871/149‑1 (MQ=255)                                                                                                                                                   cgcaggccgaccctgcactggccggcgcggcgctgctgtacctgcatggcggcggctacgtggtgggcagcctcgattcgcatgacacgctgtgctggaacctggcgcaggatgccggggtgccggtgattgccgtgggctaccggctg    >  5:327341‑M1/1‑3 (MQ=255)                                                                                                                                                    gcgccgGCCAGTGCAGGGTCGGCCTGCGGCGGGCGGTACAAGCGCACCGGCAAGGTATGGCCATCGCGGGTGGTCAACGAAAGGTCG‑CTGATGCAGTCCGGCTCGTCGGCCTTGCCCGCAATCAGCGCCGAGGACTCTTCGAACTggcg  >  3:90409/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                     GCTGTCGGGAAACGCCACTGCGGCGCCAGCCGGTAGCCCACGGCAATCACCGGCACCCCGGCATCCTGCGCCAGGTTCCAGCACAGCGTGTCATGCGAATCGAGGCTGCCCACCACGTAGCCGCCGCCATGCAGGTACAGCAGCGCCGCGCCGGCCAGTGCAGGGTCGGCCTGCGGCGGGCGGTACAAGCGCACCGGCAAGGTATGGCCATCGCGGGTGGTCAACGAAAGGTCG‑CTGATGCAGTCCGGCTCGTCGGCCTTGCCCGCAATCAGCGCCGAGGACTCTTCGAACTGGCG  >  NC_002947/4768411‑4768706

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.