New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4806771 =	40 (0.660)	4 (0.070)	4/250	NT	9.0%	coding (1121/2832 nt)	PP_4234	bifunctional aldehyde oxidase/xanthine dehydrogenase
	?	NC_002947	4806853 =	43 (0.750)					coding (1039/2832 nt)	PP_4234	bifunctional aldehyde oxidase/xanthine dehydrogenase

AGCAGTGGCGCCCACGGCGGCCACCGACGGGCTGTAGTTGATGCGCCCGCCGCCGTCGCAGCTCATGTCGGCGCGGAAGATCTTGAAGCTGTTGTCCTTCTTGTCCACCGCCAGCTGGTAGCGGATATCGAAGGCATGGCGCTTGATGCCGCTCTGGAACTGCTCGTAGCGGTCGTTGGCCAGGCGGATCGGCACGCCGGCGCCGTACAGCGCAGCCACCGCGGCATAGAAGACGAAGATATTGTTGTCTTTTGAGCCATAGCCCACGGTATAGCCCGGGTGCATGTTCAGCGT  >  NC_002947/4806626‑4806919                                                                                                                                                  |                                                                                                                                                     gtggtcgccactcagtgcccgttcgaagtggcgcaggaatgcgtgcacatgatcaaaccgtcgcgcttcgccctgaacacgctgaacatgcacccgggctataccgtgggctatggctcaaaagacaacaatatcttcgtcttctATGc                                                                                                                                                   <  2:112354‑M1/4‑1 (MQ=255)   cagTGGCGCCCACGGCGGCCACCGACGGGCTGTAGTTGATGCGCCCGCCGCCGTCGCAGCTCATGTCGGCGCGGAAGATCTTGAAGCTGTTGTCCTTCTTGTCCACCGCCAGCTGGTAGCGGATATCGAAGGCATGGCGCTTGATGCCg                                                                                                                                                 >  8:84669/1‑149 (MQ=255)     gTGGCGCCCACGGCGGCCACCGACGGGCTGTAGTTGATGCGCCCGCCGCCGTCGCAGCTCATGTCGGCGCGGAAGATCTTGAAGCTGTTGTCCTTCTTGTCCACCGCCAGCTGGTAGCGGATATCGAAGGCATGGCGCTTGATGCCGct                                                                                                                                               <  7:84669/149‑1 (MQ=255)           cccACGGCGGCCACCGACGGGCTGTAGTTGATGCGCCCGCCGCCGTCGCAGCTCATGTCGGCGCGGAAGATCTTGAAGCTGTTGTCCTTCTTGTCCACCGCCAGCTGGTAGCGGATATCGAAGGCATGGCGCTTGATGCCGCTCTGGaa                                                                                                                                         <  7:185290/149‑1 (MQ=255)            ccACGGCGGCCACCGACGGGCTGTAGTTGATGCGCCCGCCGCCGTCGCAGCTCATGTCGGCGCGGAAGATCTTGAAGCTGTTGTCCTTCTTGTCCACCGCCAGCTGGTAGCGGATATCGAAGGCATGGCGCTTGATGCCGCTCTGGAAc                                                                                                                                        >  7:83293/1‑149 (MQ=255)                ggcggcCACCGACGGGCTGTAGTTGATGCGCCCGCCGCCGTCGCAGCTCATGTCGGCGCGGAAGATCTTGAAGCTGTTGTCCTTCTTGTCCACCGCCAGCTGGTAGCGGATATCGAAGGCATGGCGCTTGATGCCGCTCTGGAACTGCt                                                                                                                                    <  3:359923/149‑1 (MQ=255)                  cccgttcgaagtggcgcaggaatgcgtgcacatgatcaaaccgtcgcgcttcgccctgaacacgctgaacatgcacccgggctataccgtgggctatggctcaaaagacaacaatatcttcgtcttctATGCCGCTCTGGAACTGCTCg                                                                                                                                  <  8:31464‑M1/21‑1 (MQ=255)                    gcCACCGACGGGCTGTAGTTGATGCGCCCGCCGCCGTCGCAGCTCATGTCGGCGCGGAAGATCTTGAAGCTGTTGTCCTTCTTGTCCACCGCCAGCTGGTAGCGGATATCGAAGGCATGGCGCTTGATGCCGCTCTGGAACTGCTCGTa                                                                                                                                <  8:23721/149‑1 (MQ=255)                       aCCGACGGGCTGTAGTTGATGCGCCCGCCGCCGTCGCAGCTCATGTCGGCGCGGAAGATCTTGAAGCTGTTGTCCTTCTTGTCCACCGCCAGCTGGTAGCGGATATCGAAGGCATGGCGCTTGATGCCGCTCTGGAACTGCTCGTAGCg                                                                                                                             <  5:290481/149‑1 (MQ=255)                           aCGGGCTGTAGTTGATGCGCCCGCCGCCGTCGCAGCTCATGTCGGCGCGGAAGATCTTGAAGCTGTTGTCCTTCTTGTCCACCGCCAGCTGGTAGCGGATATCGAAGGCATGGCGCTTGATGCCGCTCTGGAACTGCTCGTAGCGGTCg                                                                                                                         <  7:30906/149‑1 (MQ=255)                                cTGTAGTTGATGCGCCCGCCGCCGTCGCAGCTCATGTCGGCGCGGAAGATCTTGAAGCTGTTGTCCTTCTTGTCCACCGCCAGCTGGTAGCGGATATCGAAGGCATGGCGCTTGATGCCGCTCTGGAACTGCTCGt                                                                                                                                 >  3:300043/1‑136 (MQ=255)                                cTGTAGTTGATGCGCCCGCCGCCGTCGCAGCTCATGTCGGCGCGGAAGATCTTGAAGCTGTTGTCCTTCTTGTCCACCGCCAGCTGGTAGCGGATATCGAAGGCATGGCGCTTGATGCCGCTCTGGAACTGCTCGt                                                                                                                                 <  4:300043/136‑1 (MQ=255)                                     gTTGATGCGCCCGCCGCCGTCGCAGCTCATGTCGGCGCGGAAGATCTTGAAGCTGTTGTCCTTCTTGTCCACCGCCAGCTGGTAGCGGATATCGAAGGCATGGCGCTTGATGCCGCTCTGGAACTGCTCGTAGCGGTCGTTGGCCAGGc                                                                                                               >  2:243466/1‑149 (MQ=255)                                     gTTGATGCGCCCGCCGCCGTCGCAGCTCATGTCGGCGCGGAAGATCTTGAAGCTGTTGTCCTTCTTGTCCACCGCCAGCTGGTAGCGGATATCGAAGGCATGGCGCTTGATGCCGCTCTGGAACTGCTCGTAGCGGTCGTTGGCCAGGc                                                                                                               <  4:152594/149‑1 (MQ=255)                                            tgcacatgatcaaaccgtcgcgcttcgccctgaacacgctgaacatgcacccgggctataccgtgggctatggctcaaaagacaacaatatcttcgtcttctATGCCGCTCTGGAACTGCTCGTAGCGGTCGTTGGCCAGGCGGATCgg                                                                                                        <  1:304345‑M1/47‑1 (MQ=255)                                                      cgTCGCAGCTCATGTCGGCGCGGAAGATCTTGAAGCTGTTGTCCTTCTTGTCCACCGCCAGCTGGTAGCGGATATCGAAGGCATGGCGCTTGATGCCGCTCTGGAACTGCTCGTAGCGGTCGTTGGCCAGGCGGATCGGCACGCCGgcg                                                                                              <  1:291707/149‑1 (MQ=255)                                                           cAGCTCATGTCGGCGCGGAAGATCTTGAAGCTGTTGTCCTTCTTGTCCACCGCCAGCTGGTAGCGGATATCGAAGGCATGGCGCTTCATGCCGCTCTGGAACTGCTCGTAGCGGTCGTTGGCCAGGCGGATCGGCACGCCGGCGCCGTa                                                                                         <  1:109434/149‑1 (MQ=255)                                                             gCTCATGTCGGCGCGGAAGATCTTGAAGCTGTTGTCCTTCTTGTCCACCGCCAGCTGGTAGCGGATATCGAAGGCATGGCGCTTGATGCCGCTCTGGAACTGCTCGTAGCGGTCGTTGGCCAGGCGGATCGGCACGCCGgcg                                                                                              >  7:104937/1‑142 (MQ=255)                                                             gCTCATGTCGGCGCGGAAGATCTTGAAGCTGTTGTCCTTCTTGTCCACCGCCAGCTGGTAGCGGATATCGAAGGCATGGCGCTTGATGCCGCTCTGGAACTGCTCGTAGCGGTCGTTGGCCAGGCGGATCGGCACGCCGgcg                                                                                              <  8:104937/142‑1 (MQ=255)                                                             gCTCATGTCGGCGCGGAAGATCTTGAAGCTGTTGTCCTTCTTGTCCACCGCCAGCTGGTAGCGGATATCGAAGGCATGGCGCTTGATGCCGCTCTGGAACTGCTCGTAGCGGTCGTTGGCCAGGCGGATCGGCACGCCGGCGCCGTa                                                                                         >  6:187616/1‑147 (MQ=255)                                                               tCATGTCGGCGCGGAAGATCTTGAAGCTGTTGTCCTTCTTGTCCACCGCCAGCTGGTAGCGGATATCGAAGGCATGGCGCTTGATGCCGCTCTGGAACTGCTCGTAGCGGTCGTTGGCCAGGCGGATCGGCACGCCGGCGCCGTACAgc                                                                                     >  2:156035/1‑149 (MQ=255)                                                                  tggcGGCGCGGAAGATCTTGAAGCTGTTGTCCTTCTTGTCCACCGCCAGCTGGTAGCGGATATCGAAGGCATGGCGCTTGATGCCGCTCTGGAACTGCTCGTAGCGGTCGTTGGCCAGGCGGATCGGCACGCCGGCGCCGTACAGCGCa                                                                                  <  8:91915/146‑1 (MQ=255)                                                                    tCGGCGCGGAAGATCTTGAAGCTGTTGTCCTTCTTGTCCACCGCCAGCTGGTAGCGGATATCGAAGGCATGGCGCTTGATGCCGCTCTGGAACTGCTCGTAGCGGTCGTTGGCCAGGCGGATCGGCACGCCGGCGCCGTACAGCGCAGc                                                                                <  4:12907/149‑1 (MQ=255)                                                                    tCGGCGCGGAAGATCTTGAAGCTGTTGTCCTTCTTGTCCACCGCCAGCTGGTAGCGGATATCGAAGGCATGGCGCTTGATGCCGCTCTGGAACTGCTCGTAGCGGTCGTTGGCCAGGCGGATCGGCACGCCGGCGCCGTACAGCGCAGc                                                                                >  4:274033/1‑149 (MQ=255)                                                                            aacacgctgaacatgcacccgggctataccgtgggctatggctcaaaagacaacaatatcttcgtcttctATGCCGCTCTGGAACTGCTCGTAGCGGTCGTTGGCCAGGCGGATCGGCACGCCGGCGCCGTACAGCGCAGCCACcgcg                                                                         >  2:304345‑M1/71‑148 (MQ=255)                                                                                     aacatgcacccgggctataccgtgggctatggctcaaaagacaacaatatcttcgtcttctATGCCGCTCTGGAACTGCTCGTAGCGGTCGTTGGCCAGGCGGATCGGCACGCCGGCGCCGTACAGCGCAGCCACCGCGGCATagaag                                                                >  7:31464‑M1/62‑148 (MQ=255)                                                                                        ccTGGTGTCCTTCTTCTCCACCGCCAGCAGGTAGCGGATATCGAAGGAAAGGCGCTTGATGCCGCTCTCGAACTCCTCGTAGCGGTCGATCGCCAGGCGGATCGGCACGCCGGCGCCGTACAGCTCAGCCACCCCGCCATACCAGACg                                                             >  8:83887/2‑148 (MQ=255)                                                                                            ttgtCCTTCTTGTCCACCGCCAGCTGGTAGCGGATATCGAAGGCATGGCGCTTGATGCCGCTCTGGAACTGCTCGTAGCGGTCGTTGGCCAGGCGGATCGGCACGCCGGCGCCGTACAGCGCAGCCACCGCGGCATAGAAGACGAAg                                                          <  6:131195/147‑1 (MQ=255)                                                                                               tCCTTCTTGTCCACCGCCAGTTGGTAGCGGATATCGAAGGCATGGCGCTTGATGCCGCTCTGGAACTGCTCGTAGCGGTCGTTGGCCAGGCGGATCGGCACGCCGGCGCCGTACAGCGCAGCCACCGCGGCATAGAAGACGAAGATAtt                                                     >  6:331058/1‑149 (MQ=255)                                                                                               tCCTTCTTGTCCACCGCCAGCTGGTAGCGGATATCGAAGGCATGGCGCTTGATGCCGCTCTGGAACTGCTCGTAGCGGTCGTTGGCCAGGCGGATCGGCACGCCGGCGCCGTACAGCGCAGCCACCGCGGCATAGAAGACGAAGATAtt                                                     <  1:156035/149‑1 (MQ=255)                                                                                                ccTTCTTGTCCACCGCCAGCTGGTAGCGGATATCGAAGGCATGGCGCTTGATGCCGCTCTGGAACTGCTCGTAGCGGTCGTTGGCCAGGCGGATCGGCACGCCGGCGCCGTACAGCGCAGCCACCGCGGCATAGAAGACGAAGATAttg                                                    >  7:1405/1‑149 (MQ=255)                                                                                                 cttcttGTCCACCGCCAGCTGGTAGCGGATATCGAAGGCATGGCGCTTGATGCCGCTCTGGAACTGCTCGTAGCGGTCGTTGGCCAGGCGGATCGGCACGCCGGCGCCGTACAGCGCAGCCACCGCGGCATAGAAGACGAAGATAttgt                                                   >  1:112354/1‑149 (MQ=255)                                                                                                       gTCCACCGCCAGCTGGTAGCGGATATCGAAGGCATGGCGCTTGATGCCGCTCTGGAACTGCTCGTAGCGGTCGTTGGCCAGGCGGATCGGCACGCCGGCGCCGTACAGCGCAGCCACCGCGGCATAGAAGACGAAGATATTGTTGTCtt                                             >  5:190470/1‑149 (MQ=255)                                                                                                           aCCGCCAGCTGGTAGCGGATATCGAAGGCATGGCGCTTGATGCCGCTCTGGAACTGCTCGTAGCGGTCGTTGGCCAGGCGGATCGGCACGCCGGCGCCGTACCGCGCAGCCACCGCGGCATAGAAGACGAAGATATTGTTGTCtttt                                           >  6:208650/1‑147 (MQ=255)                                                                                                           aCCGCCAGCTGGTAGCGGATATCGAAGGCATGGCGCTTGATGCCGCTCTGGAACTGCTCGTAGCGGTCGTTGGCCAGGCGGATCGGCACGCCGGCGCCGTACAGCGCAGCCACCGCGGCATAGAAGACGAAGATATTGTTGTCtttt                                           >  3:157676/1‑147 (MQ=255)                                                                                                              gCCAGCTGGTAGCGGATATCGAAGGCATGGCGCTTGATGCCGCTCTGGAACTGCTCGTAGCGGTCGTTGGCCAGGCGGATCGGCACGCCGGCGCCGTACAGCGCAGCCACCGCGGCATAGAAGACGAAGATATTGTTGTCTTTTGAGc                                       >  7:122975/1‑148 (MQ=255)                                                                                                              gCCAGCTGGTAGCGGATATCGAAGGCATGGCGCTTGATGCCGCTCTGGAACTGCTCGTAGCGGTCGTTGGCCAGGCGGATCGGCACGCCGGCGCCGTACAGCGCAGCCACCGCGGCATAGAAGACGAAGATATTGTTGTCTTTTGAGc                                       >  7:128282/1‑148 (MQ=255)                                                                                                                          cGGATATCGAAGGCATGGCGCTTGATGCCGCTCTGGAACTGCTCGTAGCGGTCGTTGGCCAGGCGGATCGGCACGCCGGCGCCGTACAGCGCAGCCACCGCGGCATAGAAGACGACGATATTGTTGTCTTTTGAGCCATAGCCCACGGt                          <  1:243466/149‑1 (MQ=255)                                                                                                                           ggATATCGAAGGCATGGCGCTTGATGCCGCTCTGGAACTGCTCGTAGCGGTCGTTGGCCAGGCGGATCGGCACGCCGGCGCCGTACAGCGCAGCCACCGCGGCATAGAAGACGAAGATATTGTTGTCTTTTGAGCCATAGCCCACGGta                         >  7:119906/1‑149 (MQ=255)                                                                                                                                 cGAAGGCATGGCGCTTGATGCCGCTCTGGAACTGCTCGTAGCGGTCGTTGGCCAGGCGGATCGGCACGCCGGCGCCGTACAGCGCAGCCACCGCGGCATAGAAGACGAAGATATTGTTGTCTTTTGAGCCATAGCCCACGGTATAGccc                   >  1:82620/1‑149 (MQ=255)                                                                                                                                 cGAAGGCATGGCGCTTGATGCAGCTCTGGAAGTGCTCGTAGCGGTCGTTGGCCAGGCGGATCGGCACGCCGGCGGCGTACAGCGCAGCCACCGCGGCATTGAAGACGAAGATATAGTTGTCTTTTGAGCCATAGCCCACGGTATAGccc                   >  6:227264/1‑149 (MQ=255)                                                                                                                                   aaGGCATGGCGCTTGATGCCGCTCTGGAACTGCTCGTAGCGGTCGTTGGCCAGGCGGATCGGCACGCCGGCGCCGTACAGCGCAGCCACCGCGGCATAGAAGACGAAGATATTGTTGTCTTTTGAGCCATAGCCCACGGTATAGCCCgg                 >  3:7793/1‑149 (MQ=255)                                                                                                                                   aaGGCATGGCGCTTGATGCCGCTCTGGAACTGCTCGTAGCGGTCGTTGGCCAGGCGGATCGGCACGCCGGCGCCGTACAGCGCAGCCACCGCGGCATAGAAGACGAAGATATTGTTGTCTTTTGAGCCATAGCCCACGGTATAGCCCgg                 >  3:12998/1‑149 (MQ=255)                                                                                                                                   aaGGCATGGCGCTTGATGCCGCTCTGGAACTGCTCGTAGCGGTCGTTGGCCAGGCGGATCGGCACGCCGGCGCCGTACAGCGCAGCCACCGCGGCATAGAAGACGAAGATATTGTTGTCTTTTGAGCCATAGCCCACGGTATAGCCCgg                 >  7:26938/1‑149 (MQ=255)                                                                                                                                            cgcTTGATGCCGCTCTGGAACTGCTCGTAGCGGTCGTTGGCCAGGCGGATCGGCACGCCGGCGCCGTACAGCGCAGCCACCGCGGCATAGAAGACGAAGATATTGTTGTCTTTTGAGCCATAGCCCACGGTATAGCCCGGGTGCATGtt        <  8:6938/149‑1 (MQ=255)                                                                                                                                                 gATGCCGCTCTGGAACTGCTCGTAGCGGTCGTTGGCCAGGCGGATCGGCACGCCGGCGCCGTACAGCGCAGCCACCGCGGCATAGAAGACGAAGATATTGTTGTCTTTTGAGCCATAGCCCACGGTATAGCCCGGGTGCATGTTCAGc    <  4:12998/148‑1 (MQ=255)                                                                                                                                                 gATGCCGCTCTGGAACTGCTCGTAGCGGTCGTTGGCCAGGCGGATCGGCACGCCGGCGCCGTACAGCGCAGCCACCGCGGCATAGAAGACGAAGATATTGTTGTCTTTTGAGCCATAGCCCACGGTATAGCCCGGGTGCATGTTCAGc    <  4:7793/148‑1 (MQ=255)                                                                                                                                                 gATGCCGCTCTGGAACTGCTCGTAGCGGTCGTTGGCCAGGCGGATCGGCACGCCGGCGCCGTACAGCGCAGCCACCGCGGCATAGAAGACGAAGATATTGTTGTCTTTTGAGCCATAGCCCACGGTATAGCCCGGGTGCATGTTCAGCg   >  3:297315/1‑149 (MQ=255)                                                                                                                                                 gATGCCGCTCTGGAACTGCTCGTAGCGGTCGTTGGCCAGGCGGATCGGCACGCCGGCGCCGTACAGCGCAGCCACCGCGGCATAGAAGACGAAGATATTGTTGTCTTTTGAGCCATAGCCCACGGTATAGCCCGGGTGCATGTTCAGCg   >  6:40750/1‑149 (MQ=255)                                                                                                                                                  ATGCCGCTCTGGAACTGCTCGTAGCGGTCGTTGGCCAGGCGGATCGGCACGCCGGCGCCGTACAGCGCAGCCACCGCGGCATAGAAGACGAAGATATTGTTGTCTTTTGAGCCATAGCCCACGGTATAGCCCGGGTGCATGTTCAGCgt  >  8:83293‑M1/1‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                     AGCAGTGGCGCCCACGGCGGCCACCGACGGGCTGTAGTTGATGCGCCCGCCGCCGTCGCAGCTCATGTCGGCGCGGAAGATCTTGAAGCTGTTGTCCTTCTTGTCCACCGCCAGCTGGTAGCGGATATCGAAGGCATGGCGCTTGATGCCGCTCTGGAACTGCTCGTAGCGGTCGTTGGCCAGGCGGATCGGCACGCCGGCGCCGTACAGCGCAGCCACCGCGGCATAGAAGACGAAGATATTGTTGTCTTTTGAGCCATAGCCCACGGTATAGCCCGGGTGCATGTTCAGCGT  >  NC_002947/4806626‑4806919

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.