New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5617548 =	60 (1.000)	3 (0.050)	3/252	NT	5.3%	coding (1104/1176 nt)	wzy	O‑antigen polymerase
	?	NC_002947	5617594 =	49 (0.850)					coding (1058/1176 nt)	wzy	O‑antigen polymerase

CCGGAAGTAGATCTTCAGGCTGGAGGTGTGCTCCGCT‑GGTCGCGGTGTTTCGGCCATTATCGAGCTCGCTGTTCAGGTTGAACCGGCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCGCACGATTTCGCCCAGC  >  NC_002947/5617404‑5617695                                                                                                                                                  |                                                                                                                                                    gcttgcccggcatgttgctgtgggtaatggtgtggctgttcacgctgggcgaaatcgtgcgcgcccgcggcaccctgttcggcaaggtcctgctgggcttctgggtctactcgaccctggccatgcagttcgatgccgccagcctCAcc                                                                                                                                                  <  8:300600‑M1/4‑1 (MQ=255)  cGGAAGTAGATCTTCAGGCTGGAGGTGTGCTCACCT‑GGTCGCGGTGTTTCGGACATTATCGAGCTCGCTGTTCAGGTTGAACCGGCAATTTTACAACAGGCGTCATTTTCGGCACGCCCCCATGGAAGCAACAAGGCAAGGCCCACCgc                                                                                                                                                >  4:121198/1‑148 (MQ=255)    gAAGTAGATCTTCAGGCTGGAGGTGTGCTCCGCT‑GGTCGCGGTGTTTCGGCCATTATCGAGCTCGCTGTTCAGGTTGAACCGGCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCgg                                                                                                                                                >  2:173341/1‑147 (MQ=255)       gTAGATCTTCAGGCTGGAGGTGTGCTCCGCTGGGTCGCGGTGTTTCGGCCATTATCGAGCTCGCTGTTCAGGTTGAACCGGCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGcagc                                                                                                                                            >  1:231616/1‑149 (MQ=255)        tAGATCTTCAGGCTGGAGGTGTGCTCCGCT‑GGTCGCGGTGTTTCGGCCATTATCGAGCTCGCTGTTCAGGTTGAACCGGCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGcagcca                                                                                                                                          <  1:173341/149‑1 (MQ=255)        tAGATCTTCAGGCTGGAGGTGTGCTCCGCT‑GGTCGCGGTGTTTCGGCCATTATCGAGCTCGCTGTTCAGGTTGAACCGGCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGcagcca                                                                                                                                          <  7:211568/149‑1 (MQ=255)         aGATCTTCAGGCTGGAGGTGTGCTCCGCT‑GGTCGCGGTGTTTCGGCCATTATCGAGCTCGCTGTTCAGGTTGAACCGGCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGcagccag                                                                                                                                         >  3:344699/1‑149 (MQ=255)                 aGGCTGGAGGTGTGCTCCGCT‑GGTCGCGGTGTTTCGGCCATTATCGAGCTCGCTGTTCAGGTTGAACCGGCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGaa                                                                                                                                 <  4:344699/149‑1 (MQ=255)                 aGGCTGGAGGTGTGCTCCGCT‑GGTCGCGGTGTTTCGGCAATTATCGAGCTCGCTGTTCAGGTTGAACCGGCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGaa                                                                                                                                 <  4:242816/149‑1 (MQ=255)                   gCTGGAGGTGTGCTCCGCT‑GGTCGCGGTGTTTCGGCCATTATCGAGCTCGCTGTTCAGGTTGAACCGGCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAAcc                                                                                                                               <  4:146786/149‑1 (MQ=255)                   gCTGGAGGTGTGCTCCGCT‑GGTCGCGGTGTTTCGGCCATTATCGAGCTCGCTGTTCAGGTTGAACCGGCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAAc                                                                                                                                >  8:131212/1‑148 (MQ=255)                     tGGAGGTGTGCTCCGCT‑GGTCGCGGTGTTTCGGCCATTATCGAGCTCGCTGTTCAGGTTGAACCGGCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCtga                                                                                                                                     >  7:145225/1‑141 (MQ=255)                     tGGAGGTGTGCTCCGCT‑GGTCGCGGTGTTTCGGCCATTATCGAGCTCGCTGTTCAGGTTGAACCGGCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCtga                                                                                                                                     <  8:145225/141‑1 (MQ=255)                          gtgtGCTCCGCT‑GGTCGCGGTGTTTCGGCCATTATCGAGCTCGCTGTTCAGGTTGAACCGGCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGc                                                                                                                        <  7:351117/149‑1 (MQ=255)                            gtgCTCCGCT‑GGTCGCGGTGTTTCGGCCATTATCGAGCTCGCTGTTCAGGTTGAACCGGCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCAc                                                                                                                      >  5:130613/1‑149 (MQ=255)                               cTCCGCT‑GGTCGCGGTGTTTCGGCCATTCTCGAGCTCGCTGTTCAGGTTGAACCGGCAATTTTACCACAGGCGTCAGTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTg                                                                                                                   <  8:333349/149‑1 (MQ=255)                               cTCCGCT‑GGTCGCGGTGTTTCGGCCATTATCGAGCTCGCTGTTCAGGTTGAACCGGCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTg                                                                                                                   <  8:174783/149‑1 (MQ=255)                               cTCCGCT‑GGTCGCGGTGTTTCGGCCATTATCGAGCTCGCTGTTCAGGTTGAACCGGCAATTTTACCACAGGCATAATTTTCGGCACGCCCCCATGGAAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTg                                                                                                                   >  7:354867/1‑149 (MQ=255)                                tCCGCT‑GGTCGCGGTGTTTCGGCCATTATCGAGCTCGCTGTTCAGGTTGAACCGGCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTgg                                                                                                                  >  1:214911/1‑149 (MQ=255)                                tCCGCT‑GCTCGCGGTGTTTCGGCTATTATCGAGCTCGCTGTTCAGTTTGAACCGGCAATTTTACCACAGGCGACATTTTCGGCACGCCCCCATGGCAGCAACATGCCAAGGCCCACCGGCAGCCAGCTGATTAACCATTCGGCACGAgg                                                                                                                  >  6:328384/1‑149 (MQ=255)                                  cGCT‑GGTCGCGGTGTTTCGGCCATTATCGAGCTCGCTGTTCAGGTTGAACCGGCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTgg                                                                                                                  <  2:214911/147‑1 (MQ=255)                                  cGCT‑GGTCGCGGTGTTTCGGCCATTATCGAGCTCGCTGTTCAGGTTGAACCGGCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGc                                                                                                                 <  2:92812/148‑1 (MQ=255)                                        gTCGCGGTGTTTCGGCCATTATCGAGCTCGCTGTTCAGGTTGAACCGGCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTAc                                                                                                             <  2:231616/147‑1 (MQ=255)                                           gcgGTGTTTCGGCCATTATCGAGCTCGCTGTTCAGGTTGAACCGGCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCAcc                                                                                                                                                  <  2:48876/107‑1 (MQ=255)                                           gcgGTGTTTCGGCCATTATCGAGCTCGCTGTTCAGGTTGAACCGGCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCAcc                                                                                                                                                  >  1:48876/1‑107 (MQ=255)                                             attctcgaaatcgtgcgcgcccgcggcaccctgttcggcaaggtcctgctgggcttctgggtctactcgaccctggccatgcagttcgatgccgccagcctCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAg                                                                                                      >  7:87733‑M1/102‑149 (MQ=255)                                                   tCGGCCATTATCGAGCTCGCTGTTCAGGTTGAACCGGCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCg                                                                                                           <  2:336242/138‑1 (MQ=255)                                                   tCGGCCATTATCGAGCTCGCTGTTCAGGTTGAACCGGCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCg                                                                                                           >  1:336242/1‑138 (MQ=255)                                                    cGGCCATTATCGAGCTCGGTGTTCAGGTTGAACAGGCAATTTTACAACAGGCGTCATTATCGGCACTCCCCCATGGCATCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTgga                                                                                                <  8:63755/148‑2 (MQ=255)                                                    cGGCCATTATCGAGCTCGCTGTTCAGGTTGAACCGGCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTggc                                                                                                <  2:119492/148‑1 (MQ=255)                                                       tcgtgcgcgcccgcggcaccctgttcgggaaggtcctgctgggcttctgggtctactcgaccctggccatgcagttcgatgccgccagcctCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGa                                                                                                       <  1:216222‑M1/47‑1 (MQ=255)                                                       tcgtgcgcgcccgcggcaccctgttcggcaaggtcctgctgggcttctgggtctactcgaccctggccatgcagttcgatgccgccagcctCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGa                                                                                                       >  2:216222‑M1/92‑138 (MQ=255)                                                                  cTCGCTGTTCAGGTTGAACCGGCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCAt                                                                                 <  3:121198/149‑1 (MQ=255)                                                                     gCTGTTCAGGTTGAACCGGCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGc                                                                              <  3:25662/149‑1 (MQ=255)                                                                         ttCAGGTTGAACCGGCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAgg                                                                          >  8:50550/1‑149 (MQ=255)                                                                              gTTGAACCGGCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTc                                                                       >  7:122046/1‑147 (MQ=255)                                                                              gTTGAACCGGCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGa                                                                     <  3:50327/149‑1 (MQ=255)                                                                                 gAACCGGCAATTTTACCACAGTCGTCATTTTCGGCACGCCACCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGt                                                                   <  2:118827/148‑1 (MQ=255)                                                                                   agcGGAAATTTTACCACAGGCGTCAATTTCGGCACGCCCCCATGGCAGCAACAAGGAAAGGCCCACCGGCCGCCAGCAGATGAACCATTCGGCACGTGGCGTACAGGTGAGGCTGGCGGCATCGAACTGCCGTGCCAGGGTCGAGTAgc                                                                >  8:236664/3‑148 (MQ=255)                                                                                   aCCGGCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGa                                                                >  6:195684/1‑149 (MQ=255)                                                                                    ccGGCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGTCATGGCCGACCGGCATCCAGCTGATGAACCATTCGGCACGTg                                                                                                                   <  1:265671/97‑1 (MQ=255)                                                                                     cGGCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGAcc                                                              >  8:45850/1‑149 (MQ=255)                                                                                      ggCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGAccc                                                             <  8:122046/149‑1 (MQ=255)                                                                                         aaTTTTACCACAGGCGTCTTTTTCGGCAGGCCCCAATGGCAGCAACAGGGCAAGGCCCACCGCCAGCCTGCGTATCACCCATCCGGCACGGGCCGTACCGGGGAGTCTGGCGGCATCGAACTGCATGGCCAGGGTCGa                                                                     <  1:44430/138‑1 (MQ=255)                                                                                         aaTTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGa                                                                     >  2:44430/1‑138 (MQ=255)                                                                                           ttttACCACAGGCGTCATTTTCGGCACGCCACCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACGATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCTACTCGAccctggcc                                                        <  7:131212/149‑6 (MQ=255)                                                                                                   caGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCcagcag                                                >  5:114770/1‑149 (MQ=255)                                                                                                    aGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCcagc                                                  <  7:274314/146‑1 (MQ=255)                                                                                                    aGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCcagc                                                  >  8:274314/1‑146 (MQ=255)                                                                                                      gCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGAc                                             >  2:265746/1‑149 (MQ=255)                                                                                                        gTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCt                                           >  7:242931/1‑149 (MQ=255)                                                                                                                cGGCACGCCCCCATGGCTGCAACATGTCAAGGCCCACGGGCAGCCAGCTGATGAAGCATTCGGGACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGaa                                    <  5:328384/148‑1 (MQ=255)                                                                                                                 ggCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACa                                  <  7:45850/149‑1 (MQ=255)                                                                                                                   cACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAgg                                <  6:357881/149‑1 (MQ=255)                                                                                                                      gCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTg                             >  4:5403/1‑149 (MQ=255)                                                                                                                        ccccATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGcc                           >  6:130627/1‑149 (MQ=255)                                                                                                                          ccATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCcgc                         >  3:353263/1‑149 (MQ=255)                                                                                                                                cagcaACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGgcgc                   <  8:242931/149‑1 (MQ=255)                                                                                                                                 agcaACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAgg                                                                          <  6:55580/93‑1 (MQ=255)                                                                                                                                 agcaACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAgg                                                                          >  5:55580/1‑93 (MQ=255)                                                                                                                                  gcaACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGgcgcgc                 <  6:33938/149‑1 (MQ=255)                                                                                                                                  gcaACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGgcgcgc                 <  4:353263/149‑1 (MQ=255)                                                                                                                                     aCATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCGCAc               >  5:233952/1‑148 (MQ=255)                                                                                                                                      cATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTAGCGGTGAGGATGGCGGCATGGAACTGCATgg                                                                               <  6:7639/83‑1 (MQ=255)                                                                                                                                      cATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCGCACGa             >  3:318386/1‑149 (MQ=255)                                                                                                                                      cATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTAACGGTGAGGCTGGCGGCATCGAACTGCATgg                                                                               >  5:7639/1‑83 (MQ=255)                                                                                                                                        ttgCATGGCCCACCGGCAGCCAGGAGATGACCCATTCGGCACTTGGCGTACCGGTGAGGCTGTCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCATAACAGGGTGCCGCGTGCGCGCACGAtt           <  8:354867/147‑1 (MQ=255)                                                                                                                                              ggCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCGCACGATTTCGccc     >  1:178718/1‑149 (MQ=255)                                                                                                                                               gCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCGCACGATTTCGCCCa    <  7:50550/149‑1 (MQ=255)                                                                                                                                                 ccACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCGCACGATTTCGCCCAGc  >  3:82951/1‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                    CCGGAAGTAGATCTTCAGGCTGGAGGTGTGCTCCGCT‑GGTCGCGGTGTTTCGGCCATTATCGAGCTCGCTGTTCAGGTTGAACCGGCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCGCACGATTTCGCCCAGC  >  NC_002947/5617404‑5617695

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.