New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 1043754 | 51 (0.850) | 3 (0.050) | 3/256 | NT | 5.7% | coding (146/681 nt) | PP_0903 | hypothetical protein |
? | NC_002947 | = 1043781 | 50 (0.860) | coding (173/681 nt) | PP_0903 | hypothetical protein |
AGAAGTACGACAAAGACCATGCGCGCGAGTACTTTCTCAAGCACCAGGACG‑GCCTGGCGCGACGCCTTTCCCACAAGCGAGATGAGCAGTTGGCGCGCCGCGCCTTGGCATTGGCGGGCGA‑GCCTGGCCTGGTACTCGACCTGCCATGCGGAGCGGGCCGTTTCTGGCCGCTGTTGGCGGAAAAGCCCAATCGGGTAATCATCGGTGCCGACAACTCCGAGGCCATGATCGAGACAGCCTGTGCGGCGCAACCGCCAGAAGTTGTGGCACGGGTACGGCCTTTGCA > NC_002947/1043640‑1043925 | agaAGTACGACAAAGACCATGCGCGCGAGTACTTTCTCAAGCACCAGGACG‑GCCTGGCGCGACGCCTTTCCCACAAGCGAGATGAGCAGTTGGCGCGCCGCGCCTTGGCATTGGCGGGCGA‑GCCTGGCCTGGTACTCGACCTGCCATGc > 1:379867/1‑149 (MQ=255) cGACAAAGACCATGCGCGCGAGTACTTTCTCAAGCACCAGGACG‑GCCTGGCGCGACGCCTTTCCCACAAGCGAGATGAGCAGTTGGCGCGCCGCGCCTTGGCATTGGCGGGCGA‑GCCTGGCCTGGTACTCGACCTGCCATGCGGAGCgg < 1:168063/149‑1 (MQ=255) gACAAAGACCATGCGCGCGAGTACTTTCTCAAGCACCAGGACG‑GCCTGGCGCGACGCCTTTCCCACAAGCGAGATGAGCAGTTGGCGCGCCGCGCCTTGGCATTGGCGGGCGA‑GCCTGGCCTGGTACTCGACCTGCCATGCGGAGCggg < 4:55225/149‑1 (MQ=255) aaaGACCATGCGCGCGAGTACTTTCTCAAGCACCAGGACG‑GCCTGGCGCGACGCCTTTCCCACAAGCGAGATGAGCAGTTGGCGCGCCGCGCCTTGGCATTGGCGGGCGA‑GCCTGGCCTGGTACTCGACCTgcca < 4:327190‑M2/135‑5 (MQ=255) aaaGACCATGCGCGCGAGTACTTTCTCAAGCACCAGGACG‑GCCTGGCGCGACGCCTTTCCCACAAGCGAGATGAGCAGTTGGCGCGCCGCGCCTTGGCATTGGCGGGCGA‑GCCTGGCCTGGTACTCGACCTgcca > 3:327190‑M2/1‑131 (MQ=255) aaGACCATGCGCGCGAGTACTTTCTCAAGCACCAGGACG‑GCCTGGCGCGACGCCTTTCCCACAAGCGAGATGAGCAGTTGGCGCGCCGCGCCTTGGCATTGGCGGGCGA‑GCCTGGCCTGGTACTCGACCTGCCATGCGGAGCGGGCCGt < 6:1975/149‑1 (MQ=255) aCCATGCGCGCGAGTACTTTCTCAAGCACCAGGACGAGCCTGGCGCGCCGCCTTTCCCACAAGCGAGATGAGCAGTTGGCGCGCCGCGCGTTGGCATTGGCGGGCGA‑GCCTGGCCTGGTCCTCGCCCTGCCATGCGGAGCGGGCCGttt > 1:252609/1‑149 (MQ=255) aCCATGCGCGCGAGTACTTTCTCAAGCACCAGGACG‑GCCTGGCGCGACGCCTTTCCCACAAGCGAGATGAGCAGTTGGCGCGCCGCGCCTTGGCATTGGCGGGCGA‑GCCTGGCCTGGTACTCGACCTGCCATGCGGAGCGGGCCGTTTc < 2:252609/149‑1 (MQ=255) ccATGCGCGCGAGTACTTTCTCAAGCACCAGGACG‑GCCTGGCGCGACGCCTTTCCCACAAGCGAGATGAGCAGTTGGCGCGCCGCGCCTTGGCATTGGCGGGCGA‑GCCTGGCCTGGTACTCGACCTGCCATGCGGAGCGGGCCGTTTCt < 4:365444/149‑1 (MQ=255) cATGCGCGCGAGTACTTTCTCAAGCACCAGGACG‑GCCTGGCGCGACGCCTTTCCCACAAGCGAGATGAGCAGTTGGCGCGCCGCGCCTTGGCATTGGCGGGCGA‑GCCTGGCCTGGTACTCGACCTGCCATGCGGAGCGGGCCGTTTCTg < 7:268829/149‑1 (MQ=255) gcgcgAGTACTTTCTCAAGCACCAGGACG‑GCCTGGCGCGACGCCTTTCCCACAAGCGAGATGAGCAGTTGGCGCGCCGCGCCTTGGCATTGGCGGGCGA‑GCCTGGCCTGGTACTCGACCTGCCATGCGGAGCGGGCCGTTTCTGGCCGc > 8:321454/1‑149 (MQ=255) gTACTTTCCCAAGCACCAGGACG‑GCCTGGCGCGACGCCTGTCCCACAACCGAGCTGAGCAGGTGGCGCGCCGCGCCTTGTCATTGTCGGGCGA‑GCCTGGCCTGGTACTCGACCTGCCATGCGGAGCGGGCCGTTTCTGGCCGCTGTTgg < 4:63504/149‑1 (MQ=255) cTTTCTCAAGCACCAGGACG‑GCCTGGCGCGACGCCTTTCCCACAAGCGAGATGAGCAGTTGGCGCGCCGCGCCTTGGCATTGGCGGGCGA‑GCCTGGCCTGGTACTCGACCTGCCATGCGGAGCGGGCCGTTTCTGGCCGCTGTTGGCg > 7:346896/1‑148 (MQ=255) cTTTCTCAAGCACCAGGACG‑GCCTGGCGCGACGCCTTTCCCACAAGCGAGATGAGCAGTTGGCGCGCCGCGCCTTGGCATTGGCGGGCGA‑GCCTGGCCTGGTACTCGACCTGCCATGCGGAGCGGGCCGTTTCTGGCCGCTGTTGGCg < 2:50939/148‑1 (MQ=255) tttCTCAAGCACCAGGACG‑GCCTGGCGCGACGCCTTTCCCACAAGCGAGATGAGCAGTTGGCGCGCCGCGCCTTGGCATTGGCGGGCGA‑GCCTGGCCTGGTACTCGACCTGCCATGCGGAGCGGGCCGTTTCTGGCCGCTGTTGGCgg > 3:199792/1‑148 (MQ=255) aaGCACCAGGACG‑GCCTGGCGCGACGCCTTTCCCACAAGCGAGATGAGCAGTTGGCGCGCCGCGCCTTGGCATTGGCGGGCGA‑GCCTGGCCTGGTACTCGACCTGCCATGCGGAGCGGGCCGTTTCTGGCCGCTGTTGGCGGaaaa < 1:365496/146‑1 (MQ=255) aaGCACCAGGACG‑GCCTGGCGCGACGCCTTTCCCACAAGCGAGATGAGCAGTTGGCGCGCCGCGCCTTGGCATTGGCGGGCGA‑GCCTGGCCTGGTACTCGACCTGCCATGCGGAGCGGGCCGTTTCTGGCCGCTGTTGGCGGAAAAGcc > 5:293841/1‑149 (MQ=255) cACCAGGACG‑GCCTGGCGCGACGCCTTTCCCACAAGCGAGATGAGCAGTTGGCGCGCCGCGCCTTGGCATTGGCGGGCGA‑GCCTGGCCTGGTACTCGACCTGCCATGCGGAGCGGGCCGTTTCTGGCCGCTGTTGGCGGAAAAGCCCaa < 7:321454/149‑1 (MQ=255) gACG‑GCCTGGCGCGACGCCTTTCCCACAAGCGAGATGAGCAGTTGGCGCGCCGCGCCTTGGCATTGGCGGGCGA‑GCCTGGCCTGGTACTCGACCTGCCATGCGGAGCGGGCCGTTTCTGGCCGCTGTTGGCGGAAAAGCCCAATCggg > 5:306636/1‑148 (MQ=255) gACG‑GCCTGGCGCGACGCCTTTCCCACAAGCGAGATGAGCAGTTGGCGCGCCGCGCCTTGGCATTGGCGGGCGA‑GCCTGGCCTGGTACTCGACCTGCCATGCGGAGCGGGCCGTTTCTGGCCGCTGTTGGCGGAAAAGCCCAATCggg > 1:43220/1‑148 (MQ=255) gACG‑GCCTGGCGCGACGCCTTTCCCACAAGCGAGATGAGCAGTTGGCGCGCCGCGCCTTGGCATTGGCGGGCGA‑GCCTGGCCTGGTACTCGACCTGCCATGCGGAGCGGGCCGTTTCTGGCCGCTGTTGGCGGAAAAGCCCAATCGGGt < 4:199792/149‑1 (MQ=255) ggCGCGACGCCTTTCCCACAAGCGAGATGAGCAGTTGGCGCGCCGCGCCTTGGCATTGGCGGGCGA‑GCCTGGCCTGGTACTCGACCTGCCATGCGGAGCGGGCCGTTTCTGGCCGCTGTTGGCGGAAAAGCCCAATCGGGTAATCATCg < 2:236416/149‑1 (MQ=255) gcgcGACGCCTTTCCCACAAGCGAGATGAGCAGTTGGCGCGCCGCGCCTTGGCATTGGCGGGCGA‑GCCTGGCCTGGTACTCGACCTGCCATGCGGAGCGGGCCGTTTCTGGCCGCTGTTGGCGGAAAAGCCCAATCGGGTAATCATCgg > 5:162462/1‑149 (MQ=255) gCCTTTCCCACAAGCGAGATGAGCAGTTGGCGCGCCGCGCCTTGGCATTGGCGGGCGA‑GCCTGGCCTGGTTCTCGACCTGCCATGCGGAGCGGGCCGTTTCTGGCCGCTGTTGGCGGAAAAGCCCAATCGGGTAATCATCGGTGCCGa > 6:203584/1‑148 (MQ=255) gCCTTTCCCACAAGCGAGATGAGCAGTTGGCGCGCCGCGCCTTGGCATTGGCGGGCGA‑GCCTGGCCTGGTACTCGACCTGCCATGCGGAGCGGGCCGTTTCTGGCCGCTGTTGGCGGAAAAGCCCAATCGGGTAATCATCGGTGCCGa > 7:354494/1‑148 (MQ=255) cTTTCCCACAAGCGAGATGAGCAGTTGGCGCGCCGCGCCTTGGCATTGGCGGGCGA‑GCCTGGCCTGGTACTCGACCTGCCATGCGGAGCGGGCCGTTTCTGGCCGCTGTTGGCGGAAAAGCCCAATCGGGTAATCATCGGTGCCGACaa > 7:105866/1‑149 (MQ=255) tttCCCACAAGCGAGATGAGCAGTTGGCGCGCCGCGCCTTGGCATTGGCGGGCGA‑GCCTGGCCTGGTACTCGACCTGCCATGCGGAGCGGGCCGTTTCTGGCCGCTGTTGGCGGAAAAGCCCAATCGGGTAATCATCGGTGCCGACaa > 8:94286/1‑148 (MQ=255) ccACAAGCGAGATGAGCAGTTGGCGCGCCGCGCCTTGGCATTGGCGGGCGA‑GCCTGGCCTGGTACTCGACCTGCCATGCGGAGCGGGCCGTTTCTGGCCGCTGTTGGCGGAAAAGCCCAATCGGGTAATCATCGGTGCCGACAACTcc < 2:379867/148‑1 (MQ=255) cacaAGCGAGATGAGCAGTTGGCGCGCCGCGCCTTGGCATTGGCGGGCGA‑GCCTGGCCTGGTACTCGACCTGCCATGCGGAGCGGGCCGTTTCTGGCCGCTGTTGGCGGAAAAGCCCAATCGGGTAATCATCGGTGCCGACAACTCCGa < 6:306636/149‑1 (MQ=255) acaAGCGAGATGAGCAGTTGGCGCGCCGCGCCTTGGCATTGGCGGGCGA‑GCCTGGCCTGGTACTCGACCTGCCATGCGGAGCGTGCCGTTTCTGGCCGCTGTTGGCGGAAAAGCCCAATCGGGTAATCATCGGTGCCGACAACTCCGAg < 4:276037/149‑1 (MQ=255) aaGCGAGATGAGCAGTTGGCGCGCCGCGCCTTGGCATTGGCGGGCGA‑GCCTGGCCTGGTACTCGACCTGCCATGCGGAGCGGGCCGTTTCTGGCCGCTGTTGGCGGAAAAGCCCAATCGGGTAATCATCGGTGCCGACAACTCCGAGGc > 1:154484/1‑149 (MQ=255) aaGCGAGATGAGCAGTTGGCGCGCCGCGCCTTGGCATTGGCGGGCGA‑GCCTGGCCTGGTACTCGACCTGCCATGCGGAGCGGGCCGTTTCTGGCCGCTGTTGGCGGAAAAGCCCAATCGGGTAATCATCGGTGCAGACAACTCCGAGGc > 2:254518/1‑149 (MQ=255) gCGAGATGAGCAGTTGGCGCGCCGCGCCTTGGCATTGGCGGGCGAGGCCTGGCCTGGTACTCGACCTGCCATGCGGAGCGGGCCGTCTCTGGCCGCTGTTGGCGGAAAAGCCCAATCGGGTAATCATCGGTGCCGACAACTCCGAGGc > 1:83855/1‑148 (MQ=255) tGAGCAGTTGGCGCGCCGCGCCTTGGCATTGGCGGGCGA‑GCCTGGCCTGGTACTCGACCTGCCATGCGGAGCGGGCCGTTTCTGGCCGCTGTTGGCGGAAAAGCCCAATCGGGTAATCATCGGTGCCGACAACTCCGAGGCCATGATc < 8:105866/148‑1 (MQ=255) gAGCAGTTGGCGCGCCGCGCCTTGGCATTGGCGGGCGA‑GCCTGGCCTGGTACTCGACCTGCCATGCGGAGCGGGCCGTTTCTGGCCGCTGTTGGCGGAAAAGCCCAATCGGGTAATCATCGGTGCCGACAACTCCGAGGCCATGATc > 2:350083/1‑147 (MQ=255) atcAGTTGGCGCGCCGCGCCTTGGCATTGGCGGGAGA‑GCCTGGCCTGGTACTCGACCTGCCATGCGGAGCGGGCCGTTTCTGGCCGCTGTTGGCGGAAAAGCCCAATCGGGTAATCATCGGTGCCGACAACTCCGAGGCCATGATCga < 3:190468/146‑1 (MQ=255) cAGTTGGCGCGCCGCGCCTTGGCATTGGCGGGCGA‑GCCTGGCCTGGTACTCGACCTGCCATGCGGAGCGGGCCGTTTCTGGCCGCTGTTGGCGGAAAAGCCCAATCGGGTAATCATCGGTGCCGACAACTCCGAGGCCATGATCGAGAc > 5:220337/1‑149 (MQ=255) cAGTTGGCGCGCCGCGCCTTGGCATTGGCGGGCGA‑GCCTGGCCTGGTACTCGACCTGCCATGCGGAGCGGGCCGTTTCTGGCCGCTGTTGGCGGAAAAGCCCAATCGGGTAATCATCGGTGCCGACAACTCCGAGGCCATGATCGAGAc < 2:43220/149‑1 (MQ=255) ggCGCGCCGCGCCTTGGCATTGGCGGGCGA‑GCCTGGCCTGGTACTCGACCTGCCATGCGGAGCGGGCCGTTTCTGGCCGCTGTTGGCGGAAAAGCCCAATCGGGTAATCATCGGTGCCGACAACTCCGAGGCCATGATCGAGACAGCCt > 2:166228/1‑149 (MQ=255) cgccgcgccTTGGCATTGGCGGGCGA‑GCCTGGCCTGGTACTCGACCTGCCATGCGGAGCGGGCCGTTTCTGGCCGCTGTTGGCGGAAAAGCCCAATCGGGTAATCATCGGTGCCGACAACTCCGAGGCCATGATCGAGACAGCCTGTgc > 6:1473/1‑149 (MQ=255) cgcgccTTGGCATTGGCGGGCGA‑GCCTGGCCTGGTACTCGACCTGCCATGCGGAGCGGGCCGTTTCTGGCCGCTGTTGGCGGAAAAGCCCAATCGGGTAATCATCGGTGCCGACAACTCCGAGGCCATGATCGAGACAGCCTGTgcggc < 6:83767/149‑1 (MQ=255) ggCATTGGCGGGCGA‑GCCTGGCCTGGTACTCGACCTgccaatgccaaggcgcggcgcgccaactgctcatctcgcttgtgggaaaggcgtcgcgccaggccgtcctggtgcttgagaaagtactcgcgcgcatggtctttgtcgtactt < 4:287040‑M2/149‑114 (MQ=255) aTTGGCGGGCGA‑GCCTGGCCTGGTACTCGACCTgccaatgccaaggcgcggcgcgccaactgctcatctcgcttgtgggaaaggcgtcgcgccaggccgtcctggtgcttgagaaagtactcgcgcgcatggtctttgtcgtacttctc < 5:50907‑M2/149‑117 (MQ=255) aTTGGCGGGCGA‑GCCTGGCCTGGTACTCGACCTgccaatgccaaggcgcggcgcgccaactgctcatctcgcttgtgggaaaggcgtcgcgccaggccgtcctggtgcttgagaaagtactcgcgcgcatggtctttgtcgtacttctc > 3:287040‑M2/1‑33 (MQ=255) cgggcgA‑GCCTGGCCTGGTACTCGACCTGCCATGCGGAGCGGGCCGTTTCTGGCCGCTGTTGGCGGAAAAGCCCAATCGGGTAATCATCGGTGCCGACAACTCCGAGGCCATGATCGAGACAGCCTGTGCGGCGCAACCGCCAGAAGtt < 8:346896/149‑1 (MQ=255) cgA‑GCCTGGCCTGGTACTCGACCTGCCATGCGGAGCGGGCCGTTTCTGGCCGCTGTTGGCGGAAAAGCCCAATCGGGTAATCATCGGTGCCGACAACTCCGAGGCCATGATCGAGACAGCCTGTGCGGCGCAACCGCCAGAAGTTGTgg < 7:94286/149‑1 (MQ=255) gcctggcctgGTACTCGACCTGCCATGCGGAGCGGGCCGTTTCTGGCCGCTGTTGGCGGAAAAGCGCAATCGGGTAATCATCGGTGCCGACAACTCCGAGGCCATGATCGAGACAGCCTGTGCGGCGCAACCGCCAGAAGTTGTGGCAc < 6:293841/149‑1 (MQ=255) gcctggcctgGTACTCGACCTGCCATGCGGAGCGGGCCGTTTCTGGCCGCTGTTGGCGGAAAAGCCCAATCGGGTAATCATCGGTGCCGACAACTCCGAGGCCATGATCGAGACAGCCTGTGCGGCGCAACCGCCAGAAGTTGTGGCAc > 6:332735/1‑149 (MQ=255) ctggcctggTACTCGACCTGCCATGCGGAGCGGGCCGTTTCTGGCCGCTGTTGGCGAAAAAGCCCAATCGGGTAATCATCGGTGCCGACAACTCCGAGGCCATGATCGAGACAGCCTGTGCGGCGCAACCGCCAGAAGTTGTGGCACgg > 3:297770/1‑149 (MQ=255) cctggTACTCGACCTGCCATGCGGAGCGGGCCGTTTCTGGCCGCTGTTGGCGGAAAAGCCCAATCGGGTAATCATCGGTGCCGACAACTCCGAGGCCATGATCGAGACAGCCTGTGCGGCGCAACCGCCAGAAGTTGTGGCACGGGTAc < 3:268031/149‑1 (MQ=255) ctggTACTCGACCTGCCATGCGGAGCCGGCCGTTTCTGGCCGCTGTTGGCGGAAAAGCACAATCGGGTAATCATCGGTGCCGACAACACCGAGGCCATGATCGAGACAGCCTGTGCGGCGCAACCGCCAGAACTTGTGGCACGGGTACg > 7:216685/1‑149 (MQ=255) tACTAGACCTGCCATGCGGAGCGGGCCGTTTCTGGCCGCTGTTGGCGGAAAAGCCCAATAGGGTAATCATCGGTGCCGACAACTCCGAGGCCATGATCGAGACAGCCTGTGCGGCGCAACAGCCAGAAGTTGTGGCACGGGTACGGCCt > 5:380853/1‑149 (MQ=255) aCTCGACCTGCCATGCGGAGCGGGCCGTTTCTGGCCGCTGTTGGCGGAAAAGCCCAATCGGGTAATCATCGGTGCCGACAACTCCGAGGCCATGATCGAGACAGCATGTGCGGCGCAACCGCCAGAAGTTGTGGCACGGGTACGGCCtt > 8:292844/1‑149 (MQ=255) cTCGACCTGCCATGCGGAGCGGGCCGTTTCTGGCCGCTGTTGGCGGAAAAGCCCAATCGGGTAATCATCGGTGCCGACAACTCCGAGGCCATGATCGAGACAGCCTGTGCGGCGCACCCGCCAGAAGTTGTGGCACGGGTACGGCCttt > 6:9028/1‑149 (MQ=255) tCGACCTGCCATGCGGAGCGGGCCGTTTCTGGCCGCTGTTGGCGGAAAAGCCCAATCGGGTAATCATCGGTGCCGACAACTCCGAGGCCATGATCGAGACAGCCTGTGCGGCGCAACCGCCAGAAGTTGTGGCACGGGTACGGCCTTTg > 8:188688/1‑149 (MQ=255) tCGACCTGCCATGCGGAGCGGGCCGTTTCTGGCCGCTGTTGGCGGAAAAGCCCAATCGGGTAATCATCGGTGCCGACAACTCCGAGGCCATGATAGAGACAGCCTGTGCGGCGCAACCGCCAGAAGTTGTGGCACGGGTACGGCCTTTg > 7:291849/1‑149 (MQ=255) gACCTGCCATGCGGAGCGGGCCGTTTCTGGCCGCTGTTGGCGGAAAAGCCCAATCGGGTAATCATCGGTGCCGACAACTCCGAGGCCATGATCGAGACAGCCTGTGCGGCGCAACCGCCAGAAGTTGTGGCACGGGTACGGCCTTTGCa < 5:1473/149‑1 (MQ=255) gACCTGCCATGCGGAGCGGGCCGTCTCTGGCCGCTGTTGGCGGAAAAGCCCAATCGGGTAATCATCGGTGCCGACAACTCCGAGGCCATGATCGAGACAGCCTGTGCGGCGCAACCGCCAGAAGTTGTGGCACGGGTACGGCCTTTGCa < 2:83855/149‑1 (MQ=255) | AGAAGTACGACAAAGACCATGCGCGCGAGTACTTTCTCAAGCACCAGGACG‑GCCTGGCGCGACGCCTTTCCCACAAGCGAGATGAGCAGTTGGCGCGCCGCGCCTTGGCATTGGCGGGCGA‑GCCTGGCCTGGTACTCGACCTGCCATGCGGAGCGGGCCGTTTCTGGCCGCTGTTGGCGGAAAAGCCCAATCGGGTAATCATCGGTGCCGACAACTCCGAGGCCATGATCGAGACAGCCTGTGCGGCGCAACCGCCAGAAGTTGTGGCACGGGTACGGCCTTTGCA > NC_002947/1043640‑1043925 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |