New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1947800	46 (0.760)	4 (0.080)	4/212	NT	9.1%	intergenic (‑61/+109)	PP_1748/PP_1749	hypothetical protein/acetyltransferase
	?	NC_002947	= 1947867	43 (0.890)					intergenic (‑128/+42)	PP_1748/PP_1749	hypothetical protein/acetyltransferase

TCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGA‑GACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTGGGCTGCGGTTCATGGTTGGCCAGGCCAGCACGTTCGTTGGCCTCGATGATCA  >  NC_002947/1947728‑1948015                                                                                                                                             |                                                                                                                                                     tCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTTTCGCGTAAGGGCCGCAAAGCGGCCCCGGCAATATGGGCAGCGAAGCTGA‑GAACCTAGGGGGGCTTCGCACCCCCttagcgac                                                                                                                                              <  1:60236‑M2/148‑9 (MQ=255)           aTGTCCTGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGA‑GACCCTAGGGGCGCTTCGCACCCCAttcgcgacacaaggccgct                                                                                                                                   >  6:6915‑M2/1‑130 (MQ=255)                   gCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCGCAAGGGCCGCAAAGCGGCCCCGGCCATATCGGCAGCGCAGCTGC‑GGCCCGAGGGGCGCGTCGCACCCCCatagcgacacaaggccgctcccccaa                                                                                                                            <  5:326203‑M2/148‑27 (MQ=255)                     cTCGGGTCGGTTTAAATTTTTGCAGTTTTGGGGGCGCGGCGTGGTGTCGCTAACGGGCCGAAACGCGGCCCCGGCAATATCGGCAGCTAAGCTGA‑GACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACaaaaa                                                                                                                         <  6:326203/149‑1 (MQ=25)                        cGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCTAAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGA‑GACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAg                                                                                                                        <  5:383672/147‑1 (MQ=255)                               gTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTTTGTGGCGAAAGGGCCGCAAAGCGGCCCCCGCCATATAGGCAGCGCAGCGGT‑GACCCTAGGGGCGCTTAGCCCCCCCATAGCGCCACAACGCCGCGCCCACAAAAAGCCGAGCAGt                                                                                                               >  4:91129/1‑149 (MQ=25)                                ttAAAATTTTGCAGTCTTGTGGGCGCGGCCTTGTGTCGCGAAAGGGCCGCAAACCGGCCCCGGCAATATCGGCAGCGAAGCTGA‑GACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGtt                                                                                                              <  5:163576/149‑1 (MQ=255)                                     tttttGTAGTTTTGTGGGAGCGGCTTTGTGTCGCTAATGGGCCGAAAAGGGGCCCGGGAAATATCGGCAGCTAAGCTGA‑GACCCTAGGGGCGCTTCGCACCCAATTCGCTACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAg                                                                                                         <  4:319586/148‑1 (MQ=25)                                      ttttGCTGTCTTGTGGCCGCGGCCTTGTGTCGCTAAAGGGCCGAAACGGGGCCCCGGCAATATCGGCAGCTAAGCTGA‑GACCCTCGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAgg                                                                                                        <  2:303178/149‑1 (MQ=25)                                        ttGCTGTCTTGTGGGTGCGGCCTTGTGTCGCTAAAGGGCCGCAAAGGGGCCCCGGCAATATCGGCAGCGAAGCTGA‑GACCCTAGGGGCGCTTCGCACCCCATTCGCTACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGc                                                                                                       <  2:60236/148‑1 (MQ=25)                                                      gAGCGGCCTTGTGTCGCGAAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGA‑GACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATg                                                                                        <  1:248318/149‑1 (MQ=255)                                                      gAGCGGCCTTGTGTCGCGAAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGA‑GACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATg                                                                                        >  4:86685/1‑149 (MQ=255)                                                      gAGCGGCCTTGTGCCGCGAAAGGGCCGCAACGCGGCCCCGGCAATATCGCCAGCGAAGCTGA‑GACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATg                                                                                        <  3:91129/149‑1 (MQ=255)                                                       aGCGGCCTTGTGTCGCTAAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGA‑GACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATgg                                                                                       <  3:114850/149‑1 (MQ=255)                                                          ggCCTTGTGTCGCGAAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGA‑GACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATgggg                                                                                     >  6:88476/1‑148 (MQ=255)                                                           gCCTTGTGTCGCGAAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGA‑GACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGa                                                                                    >  5:55957/1‑148 (MQ=255)                                                             cTTGTGTCGCGAAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGA‑GACCCTAGGGGCGCTTCGCACCCCAttcgcgacacaaggccgctcccacaagactgcaaaattttaacccgaccggagg                                                                                                <  5:203597‑M2/134‑55 (MQ=255)                                                             cTTGTGTCGCGAAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGA‑GACCCTAGGGGCGCTTCGCACCCCAttcgcgacacaaggccgctcccacaagactgcaaaattttaacccgaccggagg                                                                                                >  6:203597‑M2/1‑80 (MQ=255)                                                              ttGTGTCGCGAAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGA‑GACCCTAGGGGCGCTTCGCACCCCAttcgcgacacaaggccgctcccacaagactgcaaaattttaacccgaccggaggcctggacatgtccgaa                                                                                <  3:282441‑M2/149‑71 (MQ=255)                                                                gtgtCGCGAAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGA‑GACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAAcag                                                                               >  3:23659/1‑148 (MQ=255)                                                                    cgcgAAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGA‑GACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGt                                                                          >  5:134575/1‑149 (MQ=255)                                                                     gcgAAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGA‑GACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGt                                                                          <  1:214537/148‑1 (MQ=255)                                                                          ggggCCGCTTTGCGGCCCCGGCAATATCGGCAGCGAAGCTGA‑GACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATa                                                                     >  6:260219/2‑148 (MQ=255)                                                                            ggCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGA‑GACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATaaaa                                                                  >  1:224366/1‑149 (MQ=255)                                                                                        gCCCCGGCAATATCGGCAGCGAAGCTGA‑GACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTg                                                      >  3:125248/1‑149 (MQ=255)                                                                                        gCCCCGGCAATATCGGCAGCGAAGCTGA‑GACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTg                                                      >  8:156269/1‑149 (MQ=255)                                                                                           ccGGCAATATCGGCAGCGAAGCTGAGGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTggg                                                    >  1:196961/1‑149 (MQ=255)                                                                                                    tCGGCAGCGAAGCTGA‑GACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTGGGCTGCGGTTc                                           <  4:23659/148‑1 (MQ=255)                                                                                                    tCGGCAGCGAAGCTGA‑GACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTGGGCTGCGGTTc                                           <  3:86685/148‑1 (MQ=255)                                                                                                       gCAGCGAAGCTGA‑GACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTGGGCTGCGGTTCATgg                                       <  5:88476/149‑1 (MQ=255)                                                                                                        cAGCGAAGCTGA‑GACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGACCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTGGGCTGCGGTTCATGGt                                      >  4:153220/1‑149 (MQ=255)                                                                                                         aGCGAAGCTGA‑GACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGTCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTGGGCTGCGGTTCATGGtt                                     <  6:134575/149‑1 (MQ=255)                                                                                                              aGCTGA‑GACCCTAGGGGCGCTTCGAACCCCATACGCCACACATGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTGGGCTGCGGTTCATGGTTggc                                  <  8:251180/147‑1 (MQ=255)                                                                                                                cTGA‑GACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTGGGCTGCGGTTCATGGTTggccagg                              <  8:159084/149‑1 (MQ=255)                                                                                                                  ga‑gaCCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGt                                                                                                            <  5:122615/69‑1 (MQ=255)                                                                                                                  ga‑gaCCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGt                                                                                                            >  6:122615/1‑69 (MQ=255)                                                                                                                  ga‑gaCCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTGGGCTGCGGTTCATGGTTggccaggc                             >  1:46219/1‑148 (MQ=255)                                                                                                                     gaCCCTAGGGGCGCTTCGCACCCCAttcgcgacacaaggccgctcccacaagactgcaaaattttaacccgaccggaggcctggacatgtccgaacgactccccgaacccgatctcgactatctcaaacgcgtgctgctggaaatgctc                          >  4:282441‑M2/1‑25 (MQ=255)                                                                                                                     gaCCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTGGGCTGCGGTTCATGGTTGgccaggccag                          <  6:55957/149‑1 (MQ=255)                                                                                                                        ccTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTGGGCTGCGGTTCATGGTTGGCCAGGCCAGCAc                       >  1:276702/1‑149 (MQ=255)                                                                                                                        ccTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTGGGCTGCGGTTCATGGTTGGCCAGGCCAGCAc                       >  7:35522/1‑149 (MQ=255)                                                                                                                        ccTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTGGGCTGCGGTTCATGGTTGGCCAGGCCAGCAc                       >  8:118695/1‑149 (MQ=255)                                                                                                                        ccTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTGGGCTGCGGTTCATGGTTGGCCAGGCCAGCAc                       >  1:134205/1‑149 (MQ=255)                                                                                                                          tAGGGGCGCTTCGCACCCCATTCGCGACCCAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCCACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTGGGCTGCGGTTCATGGTTGGCCAGGCCAGCAcgt                     >  2:297879/1‑149 (MQ=255)                                                                                                                            ggggCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTGGGCTGCGGTTCATGGTTGGCCAGGCCAGCAcgt                     >  2:116381/1‑147 (MQ=255)                                                                                                                            ggggCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTGGGCTGCGGTTCATGGTTGGCCAGGCCAGCAcgt                     <  1:116381/147‑1 (MQ=255)                                                                                                                                 gcTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTGGGCTGCGGTTCATGGTTGGCCAGGCCAGCACGTTCGTTgg              >  7:182813/1‑149 (MQ=255)                                                                                                                                   ttCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTGGGCTGCGGTTCATGGTTGGCCAGGCCAGCACGTTCGTTGGcc            >  2:19965/1‑149 (MQ=255)                                                                                                                                      gCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTGGGCTGCGGTTCATGGTTGGCCAGGCCAGCACGTTCGTTGGCCTc          >  8:194246/1‑148 (MQ=255)                                                                                                                                      gCACCCCANTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTGGGCTGCGGTTCATGGTTGGCCAGGCCAGCACGTTCGTTGGCCTc          >  8:199593/1‑148 (MQ=255)                                                                                                                                        aCCCCATTCGCGACACAAGGCCGCTCGCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGAt                                                                      <  1:194882/86‑1 (MQ=255)                                                                                                                                        aCCCCATTCGAGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGAt                                                                      >  2:194882/1‑86 (MQ=255)                                                                                                                                          cccATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTGGGCTGCGGTTCATGGTTGGCCAGGCCAGCACGTTCGTTg               <  2:347209/139‑1 (MQ=255)                                                                                                                                          cccATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTGGGCTGCGGTTCATGGTTGGCCAGGCCAGCACGTTCGTTg               >  1:347209/1‑139 (MQ=255)                                                                                                                                           ccATTCGCTACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTGGGCTGCGGTTCATGGTTGGCCAGGCCAGCACGTTCGTTGGCCTCgatgat    <  5:16476/149‑1 (MQ=255)                                                                                                                                             aTTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTGGGCTGCGGTTCATGGTTGGCCAGGCCAGCACGTTCGTTGGCCTCGATGATCa  >  7:179251/1‑149 (MQ=255)                                                                                                                                             |                                                                                                                                                     TCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGA‑GACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTCGATAAAACGCTCGGCGGTGGGCTGCGGTTCATGGTTGGCCAGGCCAGCACGTTCGTTGGCCTCGATGATCA  >  NC_002947/1947728‑1948015

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.