| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2530695 | NA (NA) | 3 (0.050) | 3/248 | NT | 6.9% | intergenic (+114/‑67) | PP_2218/PP_2219 | transposase/hypothetical protein |
| ? | NC_002947 | 4022279 = | 43 (0.710) | coding (27/942 nt) | PP_3547 | NAD(P)‑binding oxidoreductase | |||||
GAAGGGAACATCGACAATAGGCGAAATCGCGCTGCGTTGGAATGACGAACATCAGCACAGCCAACCCTCTGCTTTTGATCTGGCTTTTGATCTGGCTTTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGT‑CAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGC > NC_002947/4022131‑4022424 | ggtcatcaaagccgccaaaaccaaaagaccttgaaaggtatggcccttacggcgagtcactttttgtcaaacgcgacaaaaagtaaccaaaaaacgctgcgctcccatcatccggcccctgcgctgcgctccggggtcccctcactccg < 2:103258‑M2/1‑1 (MQ=255)ggtcatcaaagccgccaaaaccaaaagaccttgaaagggatggcccttacggcgagtcactttttgtcaaacgcgacaaaaagtaaccaaaaaacgctgcgctcccatcatccggcccctgcgctgcgctccggggtcccctcactccg > 6:260100‑M2/149‑149 (MQ=255)gaagggaaCATCGACAATAGGCGAAATCGCGCTGCGTTGGAATGACGAACATCAGCACAGCCAACCCTCTGCTTTTGATCTGGCTTTTGATCTGGCTTTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAg < 5:46284/149‑1 (MQ=255)gaagggaaCATCGACAATAGGCGAAATCGCGCTGCGTTGGAATGACGAACATCAGCACAGCCAACCCTCTGCTTTTGATCTGGCTTTTGATCTGGCTTTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAg < 7:309793/149‑1 (MQ=255) atcaaagccgccaaaaccaaaagaccttgaaagggatggcccttacggcgagtcactttttgtcaaacgcgacaaaaagtaaccaaaaaacgctgcgctcccatcatccggcccctgcgctgcgctccggggtcccctcactccGGCCt > 3:211805‑M2/145‑149 (MQ=255) atcaaagccgccaaaaccaaaagaccttgaaagggatggcccttacggcgagtcactttttgtcaaacgcgacaaaaagtaaccaaaaaacgctgcgctcccatcatccggcccctgcgctgcgctccggggtcccctcacaccGGCCt > 8:157726‑M2/145‑149 (MQ=255) tcaaagccgccaaaaccaaaagaccttgaaagggatggcccttacggcgagtcactttttgtcaaacgcgacaaaaagtaaccaaaaaacgctgcgctcccatcatccggcccctgcgctgcgctccggggtcccctcactccGGCCtt > 8:260668‑M2/144‑149 (MQ=255) tcaaagccgccaaaaccaaaagaccttgaaagggatggcccttacggcgagtcactttttgtcaaacgcgacaaaaagtaaccaaaaaacgctgcgctcccatcatccggcccctgcgctgcgctccggggtcccctcactccGGCCtt < 6:340846‑M2/6‑1 (MQ=255) caaagccgccaaaaccaaaagaccttgaaagggatggcccttacggcgagtcactttttgtcaaacgcgacaaaaagtaaccaaaaaacgctgcgctcccatcatccggcccctgcgctgcgctccggggtcccctcactccGGCCTTg > 6:157728‑M2/143‑149 (MQ=255) caaagccgccaaaaccaaaagaccttgaaagggatggcccttacggcgagtcactttttgtcaaacgcgacaaaaagtaaccaaaaaacgctgcgctcccatcatccggcccctgcgctgcgctccggggtcccctcactccGGCCATg > 3:360387‑M2/143‑149 (MQ=255) aaagccgccaaaaccaaaagaccttgaaagggatggcccttacggcgagtcactttttgtcaaacgcgacaaaaagtaaccaaaaaacgctgcgctcccatcatccggcccctgcgctgcgctccggggtcccctcactccGGCCTTg > 5:164352‑M2/142‑148 (MQ=255) aaagccgccaaaaccaaaagaccttgaaagggatggcccttacggcgagtcactttttgtcaaacgcgacaaaaagtaaccaaaaaacgctgcgctcccatcatccggcccctgcgctgcgctccggggtcccctcactccGGCCTTg < 5:375874‑M2/7‑1 (MQ=255) aTCGACAATAGGCGAAATCGCGCTGCGTTGGAATGACGAACATCAGCACAGCCAACCCTCTGCTTTTGATCTGGCTTTTGATCTGGCTTTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCg > 5:113306/1‑148 (MQ=255) tCGACAATAGGCGAAATCGCGCTGCGTTGGAATGACGAACATCAGCACAGCCAACCCTCTGCTTTTGATCTGGCTTTTGATCTGGCTTTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCg > 3:238855/1‑147 (MQ=255) gACAATAGGCGAAATCGCGCTGCGTTGGAATGACGAACATCAGCACAGCCAACCCTCTGCTTTTGATCTGGCTTTTGATCTGGCTTTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAgg > 3:179823/1‑149 (MQ=255) cAATAGGCGAAATCGCGCTGCGTTGGAATGACGAACATCAGCACAGCCAACCCTCTGCTTTTGATCTGGCTTTTGATCTGGCTTTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCa < 4:238855/149‑1 (MQ=255) aaaaccaaaagaccttgaaagggatggcccttacggcgagtcactttttgtcaaacgcgacaaaaagtaaccaaaaaacgctgcgctcccatcatccggcccctgcgctgcgctccggggtcccctcactccg < 8:259177‑M2/1‑1 (MQ=255) aaaccaaaagaccttgaaagggatggcccttacggcgagtcactttttgtcaaacgcgacaaaaagtaaccaaaaaacgctgcgctcccatcatccggcccctgcgctgcgctccggggtcccctcactccGGCCTTGCGGAGGCAGGt > 8:31268‑M2/132‑149 (MQ=255) gCGAAATCGCGCTGCGTTGGAATGACGAACATCAGCACAGCCAACCCTCTGCTTTTGATCTGGCTTTTGATCTGGCTTTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGAc > 8:332266/1‑149 (MQ=255) gcgcTGCGTTGGAATGACGAACATCAGCACAGCCAACCCTCTGCTTTTGATCTGGCTTTTGATCTGGCTTTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCCTGCGGAGGCAGGTGACGGGCATgg < 7:238974/149‑1 (MQ=255) cGTTGGAATGACGAACATCAGCACAGCCAACCCTCTGCTTTTGATCTGGCTTTTGATGTGGCTTTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGccc < 2:87837/149‑1 (MQ=255) gTTGGAATGACGAACATCAGCACAGCCAACCCTCTGCTTTTGATCTGGCTTTTGATCTGGCTTTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATCCATGCCCg < 7:263053/149‑1 (MQ=255) gACGAACATCAGCACAGCCAACCCTCTGCTTTTGATCTGGCTTTTGATCTGGCTTTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAgg < 3:324684/118‑1 (MQ=255) gACGAACATCAGCACAGCCAACCCTCTGCTTTTGATCTGGCTTTTGATCTGGCTTTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAgg > 4:324684/1‑118 (MQ=255) cGAACATCAGCACAGCCAACCCTCTGCTTTTGATCTGGCTTTTGATCTGGCTTTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGT‑CAAGCGCt < 3:96198/148‑1 (MQ=255) gAACATCAGCACAGCCAACCCTCTGCTTTTGATCTGGCTTTTGATCTGGCTTTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGc > 6:153285/1‑105 (MQ=255) gAACATCAGCACAGCCAACCCTCTGCTTTTGATCTGGCTTTTGATCTGGCTTTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGc < 5:153285/105‑1 (MQ=255) gAACATCAGCACAGCCAACCCTCTGCTTTTGATCTGGCTTTTGATCTGGCTTTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGT‑CAAGCGCt > 2:326833/1‑147 (MQ=255) aGCACAGCCAACCCTCTGCTTTTGATCTGGCTTTTGATCTGGCTTTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGT‑CAAGCGCTGAGGccc > 1:96687/1‑147 (MQ=255) acaGCCAACCCTCTGCTTTTGATCTGGCTTTTGATCTGGCTTTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGT‑CAAGCGCTGAGGCCCCAGGa > 6:42256/1‑149 (MQ=255) gCCATCCCTATGCTTTTGATCTGGCTTTTGATCTGGCTTTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACTCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGT‑CAAGCGCTGAGGCCCCAGGATgg < 4:219433/149‑1 (MQ=255) gCCAACCCTCTGCTTTTGATCTGGCTTTTGATCTGGCTTTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGT‑CAAGCGCTGAGGCCCCAGGATgg < 3:357719/149‑1 (MQ=255) cAACCCTCTGCTTTTGATCTGGCTTTTGATCTGGCTTTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGT‑CAAGCGCTGAGGCCCCAGGATgggg < 4:9808/149‑1 (MQ=255) cAACCCTCTGCTTTTGATCTGGCTTTTGATCTGGCTTTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGT‑CAAGCGCTGAGGCCCCAGGATgggg < 1:48725/149‑1 (MQ=255) aaCCCTCTGCATTTGATCTGGCTTTTGATCTGGCTTTTGATCTTGATCATGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCACGT‑CAAGCGCTCAGTCACCAGGATCGGGc > 2:209573/1‑149 (MQ=17) tGCTTTTGATCTGGCTTTTGATCTGGCTTTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGT‑CAAGCGCTGAGGCCCCAGGATGGGGCCTTCg < 1:212202/147‑1 (MQ=255) ttttgatctggcttttgatctggcTTTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGc > 1:24196/1‑101 (MQ=255) ttttgatctggcttttgatctggcTTTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGc < 2:24196/101‑1 (MQ=255) gcacctggcttttgacctggcttttgagCTTGATCTCGATCTTGACCTTCCCGACTTCCGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGGGACGGGCATGGAGGCCCGT‑CAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGt < 4:198851/144‑1 (MQ=14) gatctggcttttgatctggcttttGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGT‑CAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTcc > 6:95229/1‑149 (MQ=255) gatctggcttttgatctggcttttGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGT‑CAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTc < 7:13059/148‑1 (MQ=255) atctggcttttgatctggcttttgATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGT‑CAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCt > 2:344912/1‑149 (MQ=255) tggcttttgatctggcttttgatcTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGT‑CAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGcc > 2:88975/1‑149 (MQ=255) gcttttgatctggcttttgatctTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGT‑CAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCgg < 7:332266/149‑1 (MQ=40) ttttgatctggcttttgatctTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGT‑CAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCgg > 2:155623/1‑147 (MQ=38) tttgatctggcttttgatctTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATg < 4:79777/91‑1 (MQ=255) aacgctgcgctcccatcatccggcccctgcgctgcgctccggggtcccctcactccGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGT‑CAAGCGCTGAGG‑CCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCg < 7:31268‑M2/93‑1 (MQ=255) gcttttgatctTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGT‑CAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCg < 1:344912/148‑1 (MQ=32) cgctgcggtcccatcatccggcccctgcgctgcgctccggggtcccctcactccGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGT‑CAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCgg < 2:332700‑M2/95‑1 (MQ=255) ttgatcttgatcttGGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGT‑CAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCg > 8:347314/1‑148 (MQ=17) ttgatcttgatcttCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGT‑CAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGCCCGGAGCGAGGGAACCCCg > 2:32167/1‑148 (MQ=17) gatcttgatcttCGCGACTTCCGGAGGCCGCACGCTGGCGTTGCGGAGGCTGGTGACGGGCTTGGATGCCGGT‑CATGCGCTGAGGCCCCTGGTTGGGGCCTTCGGCGCGGTCCTGGCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGa < 4:284265/148‑1 (MQ=11) gatcttgatcttCGCGACTTCAGGAGGCCGAACGCAGGCGTTGCGGAGGCAGGTGACGGGCATGGATGCCCGT‑CAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCg < 3:127360/146‑1 (MQ=17) tcttgatcttCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGT‑CAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGagcg > 3:257205/1‑149 (MQ=32) atcttCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGT‑CAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGCCCGGAGCGAGGGAACCCCGGagcgtagc < 1:32167/148‑1 (MQ=12) gcgACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGT‑CAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAgggg > 4:122424/1‑149 (MQ=32) aCTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTGCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGcc > 1:104036/1‑149 (MQ=17) tCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGT‑CAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGgat > 2:238996/1‑149 (MQ=32) ggaggCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGT‑CAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGgatgat < 3:122424/149‑1 (MQ=32) ccGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGT‑CAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAg > 6:105664/1‑149 (MQ=32) gAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGT‑CAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAgcg > 8:296507/1‑149 (MQ=32) gCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGT‑CAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGc < 1:326833/149‑1 (MQ=32) | GAAGGGAACATCGACAATAGGCGAAATCGCGCTGCGTTGGAATGACGAACATCAGCACAGCCAACCCTCTGCTTTTGATCTGGCTTTTGATCTGGCTTTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGT‑CAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGC > NC_002947/4022131‑4022424 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |